geneInfo

geneInfo

geneInfo(
  gene,
  request = NULL,
  ...,
  file = NULL,
  return = TRUE,
  overwrite = FALSE,
  memoised = FALSE
)

Arguments

gene	Can either be the NCBI ID (1859), Ensembl ID (ENSG00000157540) or official symbol (DYRK1A) of the gene. NCBI ID is the most efficient (and guaranteed to be unique) identifier. Official symbol represents a gene homologue for a random taxon, unless used in a specific taxon (see the Taxa Endpoints). If a vector of length>1 is provided all matching gene objects will be returned.
request	Character. If NULL retrieves all genes matching the identifier. Otherwise evidence: Retrieves gene evidence for the given gene locations: Retrieves the physical location of the given gene probes: Retrieves the probes (composite sequences) with this gene. Parameters: offset: Optional, defaults to 0. Skips the specified amount of objects when retrieving them from the database. limit: Optional, defaults to 20. Limits the result to specified amount of objects. Use 0 for no limit. goTerms: Retrieves the GO terms of the given gene coexpression: Retrieves the coexpression of two given genes. Parameters: with: Required. Can either be the NCBI ID (1859), Ensembl ID (ENSG00000157540) or official symbol (DYRK1A) of the gene. NCBI ID is the most efficient (and guaranteed to be unique) identifier. Official symbol represents a gene homologue for a random taxon, unless used in a specific taxon (see the Taxa Endpoints). limit: Optional, defaults to 100. Limits the result to specified amount of objects. Use 0 for no limit. stringency: Optional, defaults to 1. Sets the stringency of coexpression search.
...	Use if the specified request has additional parameters.
file	Character. File path. If provided, response will be saved to file
return	Logical. If the response should be returned. Set to false when you only want to save a file
overwrite	Logical. If TRUE, existing files will be overwritten. If FALSE a warning will be thrown and no action is taken.
memoised	Logical. If TRUE a memoised version of the function will be used which is faster for repeated requests. Use forgetGemmaMemoised to clear memory.

Value

A list

Examples

geneInfo(1859)
#> $DYRK1A
#> $DYRK1A$compositeSequenceCount
#> [1] 0
#> 
#> $DYRK1A$phenotypes
#> NULL
#> 
#> $DYRK1A$officialSymbol
#> [1] "DYRK1A"
#> 
#> $DYRK1A$taxonId
#> [1] 1
#> 
#> $DYRK1A$homologues
#> NULL
#> 
#> $DYRK1A$taxonCommonName
#> [1] "human"
#> 
#> $DYRK1A$score
#> NULL
#> 
#> $DYRK1A$officialName
#> [1] "dual specificity tyrosine phosphorylation regulated kinase 1A"
#> 
#> $DYRK1A$numGoTerms
#> [1] 0
#> 
#> $DYRK1A$ncbiId
#> [1] 1859
#> 
#> $DYRK1A$ensemblId
#> [1] "ENSG00000157540"
#> 
#> $DYRK1A$associatedExperimentCount
#> [1] 0
#> 
#> $DYRK1A$geneSets
#> NULL
#> 
#> $DYRK1A$isQuery
#> [1] TRUE
#> 
#> $DYRK1A$multifunctionalityRank
#> [1] 0
#> 
#> $DYRK1A$nodeDegreeNegRanks
#> NULL
#> 
#> $DYRK1A$nodeDegreePosRanks
#> NULL
#> 
#> $DYRK1A$nodeDegreesNeg
#> NULL
#> 
#> $DYRK1A$nodeDegreesPos
#> NULL
#> 
#> $DYRK1A$platformCount
#> NULL
#> 
#> $DYRK1A$taxonScientificName
#> [1] "Homo sapiens"
#> 
#> $DYRK1A$aliases
#> NULL
#> 
#> $DYRK1A$description
#> [1] "Imported from NCBI gene; Nomenclature status: INTERIM"
#> 
#> $DYRK1A$name
#> [1] "DYRK1A"
#> 
#> $DYRK1A$`_totalInQuery`
#> [1] 0
#> 
#> $DYRK1A$id
#> [1] 38762
#> 
#> 
geneInfo('1859') # single match it is a unique NCBI id
#> $DYRK1A
#> $DYRK1A$compositeSequenceCount
#> [1] 0
#> 
#> $DYRK1A$phenotypes
#> NULL
#> 
#> $DYRK1A$officialSymbol
#> [1] "DYRK1A"
#> 
#> $DYRK1A$taxonId
#> [1] 1
#> 
#> $DYRK1A$homologues
#> NULL
#> 
#> $DYRK1A$taxonCommonName
#> [1] "human"
#> 
#> $DYRK1A$score
#> NULL
#> 
#> $DYRK1A$officialName
#> [1] "dual specificity tyrosine phosphorylation regulated kinase 1A"
#> 
#> $DYRK1A$numGoTerms
#> [1] 0
#> 
#> $DYRK1A$ncbiId
#> [1] 1859
#> 
#> $DYRK1A$ensemblId
#> [1] "ENSG00000157540"
#> 
#> $DYRK1A$associatedExperimentCount
#> [1] 0
#> 
#> $DYRK1A$geneSets
#> NULL
#> 
#> $DYRK1A$isQuery
#> [1] TRUE
#> 
#> $DYRK1A$multifunctionalityRank
#> [1] 0
#> 
#> $DYRK1A$nodeDegreeNegRanks
#> NULL
#> 
#> $DYRK1A$nodeDegreePosRanks
#> NULL
#> 
#> $DYRK1A$nodeDegreesNeg
#> NULL
#> 
#> $DYRK1A$nodeDegreesPos
#> NULL
#> 
#> $DYRK1A$platformCount
#> NULL
#> 
#> $DYRK1A$taxonScientificName
#> [1] "Homo sapiens"
#> 
#> $DYRK1A$aliases
#> NULL
#> 
#> $DYRK1A$description
#> [1] "Imported from NCBI gene; Nomenclature status: INTERIM"
#> 
#> $DYRK1A$name
#> [1] "DYRK1A"
#> 
#> $DYRK1A$`_totalInQuery`
#> [1] 0
#> 
#> $DYRK1A$id
#> [1] 38762
#> 
#> 
geneInfo('DYRK1A') # this returns all genes named DYRK1A from all species
#> $DYRK1A
#> $DYRK1A$compositeSequenceCount
#> [1] 0
#> 
#> $DYRK1A$phenotypes
#> NULL
#> 
#> $DYRK1A$officialSymbol
#> [1] "DYRK1A"
#> 
#> $DYRK1A$taxonId
#> [1] 1
#> 
#> $DYRK1A$homologues
#> NULL
#> 
#> $DYRK1A$taxonCommonName
#> [1] "human"
#> 
#> $DYRK1A$score
#> NULL
#> 
#> $DYRK1A$officialName
#> [1] "dual specificity tyrosine phosphorylation regulated kinase 1A"
#> 
#> $DYRK1A$numGoTerms
#> [1] 0
#> 
#> $DYRK1A$ncbiId
#> [1] 1859
#> 
#> $DYRK1A$ensemblId
#> [1] "ENSG00000157540"
#> 
#> $DYRK1A$associatedExperimentCount
#> [1] 0
#> 
#> $DYRK1A$geneSets
#> NULL
#> 
#> $DYRK1A$isQuery
#> [1] TRUE
#> 
#> $DYRK1A$multifunctionalityRank
#> [1] 0
#> 
#> $DYRK1A$nodeDegreeNegRanks
#> NULL
#> 
#> $DYRK1A$nodeDegreePosRanks
#> NULL
#> 
#> $DYRK1A$nodeDegreesNeg
#> NULL
#> 
#> $DYRK1A$nodeDegreesPos
#> NULL
#> 
#> $DYRK1A$platformCount
#> NULL
#> 
#> $DYRK1A$taxonScientificName
#> [1] "Homo sapiens"
#> 
#> $DYRK1A$aliases
#> NULL
#> 
#> $DYRK1A$description
#> [1] "Imported from NCBI gene; Nomenclature status: INTERIM"
#> 
#> $DYRK1A$name
#> [1] "DYRK1A"
#> 
#> $DYRK1A$`_totalInQuery`
#> [1] 0
#> 
#> $DYRK1A$id
#> [1] 38762
#> 
#> 
#> $Dyrk1a
#> $Dyrk1a$compositeSequenceCount
#> [1] 0
#> 
#> $Dyrk1a$phenotypes
#> NULL
#> 
#> $Dyrk1a$officialSymbol
#> [1] "Dyrk1a"
#> 
#> $Dyrk1a$taxonId
#> [1] 2
#> 
#> $Dyrk1a$homologues
#> NULL
#> 
#> $Dyrk1a$taxonCommonName
#> [1] "mouse"
#> 
#> $Dyrk1a$score
#> NULL
#> 
#> $Dyrk1a$officialName
#> [1] "dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a"
#> 
#> $Dyrk1a$numGoTerms
#> [1] 0
#> 
#> $Dyrk1a$ncbiId
#> [1] 13548
#> 
#> $Dyrk1a$ensemblId
#> [1] "ENSMUSG00000022897"
#> 
#> $Dyrk1a$associatedExperimentCount
#> [1] 0
#> 
#> $Dyrk1a$geneSets
#> NULL
#> 
#> $Dyrk1a$isQuery
#> [1] TRUE
#> 
#> $Dyrk1a$multifunctionalityRank
#> [1] 0
#> 
#> $Dyrk1a$nodeDegreeNegRanks
#> NULL
#> 
#> $Dyrk1a$nodeDegreePosRanks
#> NULL
#> 
#> $Dyrk1a$nodeDegreesNeg
#> NULL
#> 
#> $Dyrk1a$nodeDegreesPos
#> NULL
#> 
#> $Dyrk1a$platformCount
#> NULL
#> 
#> $Dyrk1a$taxonScientificName
#> [1] "Mus musculus"
#> 
#> $Dyrk1a$aliases
#> NULL
#> 
#> $Dyrk1a$description
#> [1] "Imported from NCBI gene; Nomenclature status: INTERIM"
#> 
#> $Dyrk1a$name
#> [1] "Dyrk1a"
#> 
#> $Dyrk1a$`_totalInQuery`
#> [1] 0
#> 
#> $Dyrk1a$id
#> [1] 502103
#> 
#> 
#> $Dyrk1a
#> $Dyrk1a$compositeSequenceCount
#> [1] 0
#> 
#> $Dyrk1a$phenotypes
#> NULL
#> 
#> $Dyrk1a$officialSymbol
#> [1] "Dyrk1a"
#> 
#> $Dyrk1a$taxonId
#> [1] 3
#> 
#> $Dyrk1a$homologues
#> NULL
#> 
#> $Dyrk1a$taxonCommonName
#> [1] "rat"
#> 
#> $Dyrk1a$score
#> NULL
#> 
#> $Dyrk1a$officialName
#> [1] "dual specificity tyrosine phosphorylation regulated kinase 1A"
#> 
#> $Dyrk1a$numGoTerms
#> [1] 0
#> 
#> $Dyrk1a$ncbiId
#> [1] 25255
#> 
#> $Dyrk1a$ensemblId
#> [1] "ENSRNOG00000001662"
#> 
#> $Dyrk1a$associatedExperimentCount
#> [1] 0
#> 
#> $Dyrk1a$geneSets
#> NULL
#> 
#> $Dyrk1a$isQuery
#> [1] TRUE
#> 
#> $Dyrk1a$multifunctionalityRank
#> [1] 0
#> 
#> $Dyrk1a$nodeDegreeNegRanks
#> NULL
#> 
#> $Dyrk1a$nodeDegreePosRanks
#> NULL
#> 
#> $Dyrk1a$nodeDegreesNeg
#> NULL
#> 
#> $Dyrk1a$nodeDegreesPos
#> NULL
#> 
#> $Dyrk1a$platformCount
#> NULL
#> 
#> $Dyrk1a$taxonScientificName
#> [1] "Rattus norvegicus"
#> 
#> $Dyrk1a$aliases
#> NULL
#> 
#> $Dyrk1a$description
#> [1] "Imported from NCBI gene; Nomenclature status: INTERIM"
#> 
#> $Dyrk1a$name
#> [1] "Dyrk1a"
#> 
#> $Dyrk1a$`_totalInQuery`
#> [1] 0
#> 
#> $Dyrk1a$id
#> [1] 943947
#> 
#> 

geneInfo('1859','goTerms')
#> $`GO:0048585`
#> $`GO:0048585`$term
#> [1] "negative regulation of response to stimulus"
#> 
#> $`GO:0048585`$label
#> [1] "negative regulation of response to stimulus"
#> 
#> $`GO:0048585`$obsolete
#> [1] FALSE
#> 
#> $`GO:0048585`$goId
#> [1] "GO:0048585"
#> 
#> $`GO:0048585`$comment
#> [1] "Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC."
#> 
#> $`GO:0048585`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0048585"
#> 
#> $`GO:0048585`$localName
#> [1] "GO_0048585"
#> 
#> 
#> $`GO:0005737`
#> $`GO:0005737`$term
#> [1] "cytoplasm"
#> 
#> $`GO:0005737`$label
#> [1] "cytoplasm"
#> 
#> $`GO:0005737`$obsolete
#> [1] FALSE
#> 
#> $`GO:0005737`$goId
#> [1] "GO:0005737"
#> 
#> $`GO:0005737`$comment
#> [1] ""
#> 
#> $`GO:0005737`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0005737"
#> 
#> $`GO:0005737`$localName
#> [1] "GO_0005737"
#> 
#> 
#> $`GO:0000166`
#> $`GO:0000166`$term
#> [1] "nucleotide binding"
#> 
#> $`GO:0000166`$label
#> [1] "nucleotide binding"
#> 
#> $`GO:0000166`$obsolete
#> [1] FALSE
#> 
#> $`GO:0000166`$goId
#> [1] "GO:0000166"
#> 
#> $`GO:0000166`$comment
#> [1] ""
#> 
#> $`GO:0000166`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0000166"
#> 
#> $`GO:0000166`$localName
#> [1] "GO_0000166"
#> 
#> 
#> $`GO:0048583`
#> $`GO:0048583`$term
#> [1] "regulation of response to stimulus"
#> 
#> $`GO:0048583`$label
#> [1] "regulation of response to stimulus"
#> 
#> $`GO:0048583`$obsolete
#> [1] FALSE
#> 
#> $`GO:0048583`$goId
#> [1] "GO:0048583"
#> 
#> $`GO:0048583`$comment
#> [1] "Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC."
#> 
#> $`GO:0048583`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0048583"
#> 
#> $`GO:0048583`$localName
#> [1] "GO_0048583"
#> 
#> 
#> $`GO:0005856`
#> $`GO:0005856`$term
#> [1] "cytoskeleton"
#> 
#> $`GO:0005856`$label
#> [1] "cytoskeleton"
#> 
#> $`GO:0005856`$obsolete
#> [1] FALSE
#> 
#> $`GO:0005856`$goId
#> [1] "GO:0005856"
#> 
#> $`GO:0005856`$comment
#> [1] ""
#> 
#> $`GO:0005856`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0005856"
#> 
#> $`GO:0005856`$localName
#> [1] "GO_0005856"
#> 
#> 
#> $`GO:0050789`
#> $`GO:0050789`$term
#> [1] "regulation of biological process"
#> 
#> $`GO:0050789`$label
#> [1] "regulation of biological process"
#> 
#> $`GO:0050789`$obsolete
#> [1] FALSE
#> 
#> $`GO:0050789`$goId
#> [1] "GO:0050789"
#> 
#> $`GO:0050789`$comment
#> [1] ""
#> 
#> $`GO:0050789`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0050789"
#> 
#> $`GO:0050789`$localName
#> [1] "GO_0050789"
#> 
#> 
#> $`GO:1903508`
#> $`GO:1903508`$term
#> [1] "positive regulation of nucleic acid-templated transcription"
#> 
#> $`GO:1903508`$label
#> [1] "positive regulation of nucleic acid-templated transcription"
#> 
#> $`GO:1903508`$obsolete
#> [1] FALSE
#> 
#> $`GO:1903508`$goId
#> [1] "GO:1903508"
#> 
#> $`GO:1903508`$comment
#> [1] ""
#> 
#> $`GO:1903508`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_1903508"
#> 
#> $`GO:1903508`$localName
#> [1] "GO_1903508"
#> 
#> 
#> $`GO:0032559`
#> $`GO:0032559`$term
#> [1] "adenyl ribonucleotide binding"
#> 
#> $`GO:0032559`$label
#> [1] "adenyl ribonucleotide binding"
#> 
#> $`GO:0032559`$obsolete
#> [1] FALSE
#> 
#> $`GO:0032559`$goId
#> [1] "GO:0032559"
#> 
#> $`GO:0032559`$comment
#> [1] ""
#> 
#> $`GO:0032559`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0032559"
#> 
#> $`GO:0032559`$localName
#> [1] "GO_0032559"
#> 
#> 
#> $`GO:1903506`
#> $`GO:1903506`$term
#> [1] "regulation of nucleic acid-templated transcription"
#> 
#> $`GO:1903506`$label
#> [1] "regulation of nucleic acid-templated transcription"
#> 
#> $`GO:1903506`$obsolete
#> [1] FALSE
#> 
#> $`GO:1903506`$goId
#> [1] "GO:1903506"
#> 
#> $`GO:1903506`$comment
#> [1] ""
#> 
#> $`GO:1903506`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_1903506"
#> 
#> $`GO:1903506`$localName
#> [1] "GO_1903506"
#> 
#> 
#> $`GO:0010646`
#> $`GO:0010646`$term
#> [1] "regulation of cell communication"
#> 
#> $`GO:0010646`$label
#> [1] "regulation of cell communication"
#> 
#> $`GO:0010646`$obsolete
#> [1] FALSE
#> 
#> $`GO:0010646`$goId
#> [1] "GO:0010646"
#> 
#> $`GO:0010646`$comment
#> [1] ""
#> 
#> $`GO:0010646`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0010646"
#> 
#> $`GO:0010646`$localName
#> [1] "GO_0010646"
#> 
#> 
#> $`GO:1902531`
#> $`GO:1902531`$term
#> [1] "regulation of intracellular signal transduction"
#> 
#> $`GO:1902531`$label
#> [1] "regulation of intracellular signal transduction"
#> 
#> $`GO:1902531`$obsolete
#> [1] FALSE
#> 
#> $`GO:1902531`$goId
#> [1] "GO:1902531"
#> 
#> $`GO:1902531`$comment
#> [1] ""
#> 
#> $`GO:1902531`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_1902531"
#> 
#> $`GO:1902531`$localName
#> [1] "GO_1902531"
#> 
#> 
#> $`GO:1901564`
#> $`GO:1901564`$term
#> [1] "organonitrogen compound metabolic process"
#> 
#> $`GO:1901564`$label
#> [1] "organonitrogen compound metabolic process"
#> 
#> $`GO:1901564`$obsolete
#> [1] FALSE
#> 
#> $`GO:1901564`$goId
#> [1] "GO:1901564"
#> 
#> $`GO:1901564`$comment
#> [1] ""
#> 
#> $`GO:1901564`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_1901564"
#> 
#> $`GO:1901564`$localName
#> [1] "GO_1901564"
#> 
#> 
#> $`GO:1902532`
#> $`GO:1902532`$term
#> [1] "negative regulation of intracellular signal transduction"
#> 
#> $`GO:1902532`$label
#> [1] "negative regulation of intracellular signal transduction"
#> 
#> $`GO:1902532`$obsolete
#> [1] FALSE
#> 
#> $`GO:1902532`$goId
#> [1] "GO:1902532"
#> 
#> $`GO:1902532`$comment
#> [1] ""
#> 
#> $`GO:1902532`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_1902532"
#> 
#> $`GO:1902532`$localName
#> [1] "GO_1902532"
#> 
#> 
#> $`GO:0010648`
#> $`GO:0010648`$term
#> [1] "negative regulation of cell communication"
#> 
#> $`GO:0010648`$label
#> [1] "negative regulation of cell communication"
#> 
#> $`GO:0010648`$obsolete
#> [1] FALSE
#> 
#> $`GO:0010648`$goId
#> [1] "GO:0010648"
#> 
#> $`GO:0010648`$comment
#> [1] ""
#> 
#> $`GO:0010648`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0010648"
#> 
#> $`GO:0010648`$localName
#> [1] "GO_0010648"
#> 
#> 
#> $`GO:0042802`
#> $`GO:0042802`$term
#> [1] "identical protein binding"
#> 
#> $`GO:0042802`$label
#> [1] "identical protein binding"
#> 
#> $`GO:0042802`$obsolete
#> [1] FALSE
#> 
#> $`GO:0042802`$goId
#> [1] "GO:0042802"
#> 
#> $`GO:0042802`$comment
#> [1] ""
#> 
#> $`GO:0042802`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0042802"
#> 
#> $`GO:0042802`$localName
#> [1] "GO_0042802"
#> 
#> 
#> $`GO:0009891`
#> $`GO:0009891`$term
#> [1] "positive regulation of biosynthetic process"
#> 
#> $`GO:0009891`$label
#> [1] "positive regulation of biosynthetic process"
#> 
#> $`GO:0009891`$obsolete
#> [1] FALSE
#> 
#> $`GO:0009891`$goId
#> [1] "GO:0009891"
#> 
#> $`GO:0009891`$comment
#> [1] ""
#> 
#> $`GO:0009891`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0009891"
#> 
#> $`GO:0009891`$localName
#> [1] "GO_0009891"
#> 
#> 
#> $`GO:0065009`
#> $`GO:0065009`$term
#> [1] "regulation of molecular function"
#> 
#> $`GO:0065009`$label
#> [1] "regulation of molecular function"
#> 
#> $`GO:0065009`$obsolete
#> [1] FALSE
#> 
#> $`GO:0065009`$goId
#> [1] "GO:0065009"
#> 
#> $`GO:0065009`$comment
#> [1] ""
#> 
#> $`GO:0065009`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0065009"
#> 
#> $`GO:0065009`$localName
#> [1] "GO_0065009"
#> 
#> 
#> $`GO:0009892`
#> $`GO:0009892`$term
#> [1] "negative regulation of metabolic process"
#> 
#> $`GO:0009892`$label
#> [1] "negative regulation of metabolic process"
#> 
#> $`GO:0009892`$obsolete
#> [1] FALSE
#> 
#> $`GO:0009892`$goId
#> [1] "GO:0009892"
#> 
#> $`GO:0009892`$comment
#> [1] ""
#> 
#> $`GO:0009892`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0009892"
#> 
#> $`GO:0009892`$localName
#> [1] "GO_0009892"
#> 
#> 
#> $`GO:0009893`
#> $`GO:0009893`$term
#> [1] "positive regulation of metabolic process"
#> 
#> $`GO:0009893`$label
#> [1] "positive regulation of metabolic process"
#> 
#> $`GO:0009893`$obsolete
#> [1] FALSE
#> 
#> $`GO:0009893`$goId
#> [1] "GO:0009893"
#> 
#> $`GO:0009893`$comment
#> [1] ""
#> 
#> $`GO:0009893`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0009893"
#> 
#> $`GO:0009893`$localName
#> [1] "GO_0009893"
#> 
#> 
#> $`GO:0036477`
#> $`GO:0036477`$term
#> [1] "somatodendritic compartment"
#> 
#> $`GO:0036477`$label
#> [1] "somatodendritic compartment"
#> 
#> $`GO:0036477`$obsolete
#> [1] FALSE
#> 
#> $`GO:0036477`$goId
#> [1] "GO:0036477"
#> 
#> $`GO:0036477`$comment
#> [1] ""
#> 
#> $`GO:0036477`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0036477"
#> 
#> $`GO:0036477`$localName
#> [1] "GO_0036477"
#> 
#> 
#> $`GO:0065007`
#> $`GO:0065007`$term
#> [1] "biological regulation"
#> 
#> $`GO:0065007`$label
#> [1] "biological regulation"
#> 
#> $`GO:0065007`$obsolete
#> [1] FALSE
#> 
#> $`GO:0065007`$goId
#> [1] "GO:0065007"
#> 
#> $`GO:0065007`$comment
#> [1] ""
#> 
#> $`GO:0065007`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0065007"
#> 
#> $`GO:0065007`$localName
#> [1] "GO_0065007"
#> 
#> 
#> $`GO:0019219`
#> $`GO:0019219`$term
#> [1] "regulation of nucleobase-containing compound metabolic process"
#> 
#> $`GO:0019219`$label
#> [1] "regulation of nucleobase-containing compound metabolic process"
#> 
#> $`GO:0019219`$obsolete
#> [1] FALSE
#> 
#> $`GO:0019219`$goId
#> [1] "GO:0019219"
#> 
#> $`GO:0019219`$comment
#> [1] ""
#> 
#> $`GO:0019219`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0019219"
#> 
#> $`GO:0019219`$localName
#> [1] "GO_0019219"
#> 
#> 
#> $`GO:0032555`
#> $`GO:0032555`$term
#> [1] "purine ribonucleotide binding"
#> 
#> $`GO:0032555`$label
#> [1] "purine ribonucleotide binding"
#> 
#> $`GO:0032555`$obsolete
#> [1] FALSE
#> 
#> $`GO:0032555`$goId
#> [1] "GO:0032555"
#> 
#> $`GO:0032555`$comment
#> [1] ""
#> 
#> $`GO:0032555`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0032555"
#> 
#> $`GO:0032555`$localName
#> [1] "GO_0032555"
#> 
#> 
#> $`GO:0032553`
#> $`GO:0032553`$term
#> [1] "ribonucleotide binding"
#> 
#> $`GO:0032553`$label
#> [1] "ribonucleotide binding"
#> 
#> $`GO:0032553`$obsolete
#> [1] FALSE
#> 
#> $`GO:0032553`$goId
#> [1] "GO:0032553"
#> 
#> $`GO:0032553`$comment
#> [1] ""
#> 
#> $`GO:0032553`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0032553"
#> 
#> $`GO:0032553`$localName
#> [1] "GO_0032553"
#> 
#> 
#> $`GO:0016740`
#> $`GO:0016740`$term
#> [1] "transferase activity"
#> 
#> $`GO:0016740`$label
#> [1] "transferase activity"
#> 
#> $`GO:0016740`$obsolete
#> [1] FALSE
#> 
#> $`GO:0016740`$goId
#> [1] "GO:0016740"
#> 
#> $`GO:0016740`$comment
#> [1] ""
#> 
#> $`GO:0016740`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0016740"
#> 
#> $`GO:0016740`$localName
#> [1] "GO_0016740"
#> 
#> 
#> $`GO:0050794`
#> $`GO:0050794`$term
#> [1] "regulation of cellular process"
#> 
#> $`GO:0050794`$label
#> [1] "regulation of cellular process"
#> 
#> $`GO:0050794`$obsolete
#> [1] FALSE
#> 
#> $`GO:0050794`$goId
#> [1] "GO:0050794"
#> 
#> $`GO:0050794`$comment
#> [1] ""
#> 
#> $`GO:0050794`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0050794"
#> 
#> $`GO:0050794`$localName
#> [1] "GO_0050794"
#> 
#> 
#> $`GO:0005622`
#> $`GO:0005622`$term
#> [1] "intracellular"
#> 
#> $`GO:0005622`$label
#> [1] "intracellular"
#> 
#> $`GO:0005622`$obsolete
#> [1] FALSE
#> 
#> $`GO:0005622`$goId
#> [1] "GO:0005622"
#> 
#> $`GO:0005622`$comment
#> [1] ""
#> 
#> $`GO:0005622`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0005622"
#> 
#> $`GO:0005622`$localName
#> [1] "GO_0005622"
#> 
#> 
#> $`GO:0050435`
#> $`GO:0050435`$term
#> [1] "amyloid-beta metabolic process"
#> 
#> $`GO:0050435`$label
#> [1] "amyloid-beta metabolic process"
#> 
#> $`GO:0050435`$obsolete
#> [1] FALSE
#> 
#> $`GO:0050435`$goId
#> [1] "GO:0050435"
#> 
#> $`GO:0050435`$comment
#> [1] ""
#> 
#> $`GO:0050435`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0050435"
#> 
#> $`GO:0050435`$localName
#> [1] "GO_0050435"
#> 
#> 
#> $`GO:0043227`
#> $`GO:0043227`$term
#> [1] "membrane-bounded organelle"
#> 
#> $`GO:0043227`$label
#> [1] "membrane-bounded organelle"
#> 
#> $`GO:0043227`$obsolete
#> [1] FALSE
#> 
#> $`GO:0043227`$goId
#> [1] "GO:0043227"
#> 
#> $`GO:0043227`$comment
#> [1] ""
#> 
#> $`GO:0043227`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0043227"
#> 
#> $`GO:0043227`$localName
#> [1] "GO_0043227"
#> 
#> 
#> $`GO:0043226`
#> $`GO:0043226`$term
#> [1] "organelle"
#> 
#> $`GO:0043226`$label
#> [1] "organelle"
#> 
#> $`GO:0043226`$obsolete
#> [1] FALSE
#> 
#> $`GO:0043226`$goId
#> [1] "GO:0043226"
#> 
#> $`GO:0043226`$comment
#> [1] ""
#> 
#> $`GO:0043226`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0043226"
#> 
#> $`GO:0043226`$localName
#> [1] "GO_0043226"
#> 
#> 
#> $`GO:2000112`
#> $`GO:2000112`$term
#> [1] "regulation of cellular macromolecule biosynthetic process"
#> 
#> $`GO:2000112`$label
#> [1] "regulation of cellular macromolecule biosynthetic process"
#> 
#> $`GO:2000112`$obsolete
#> [1] FALSE
#> 
#> $`GO:2000112`$goId
#> [1] "GO:2000112"
#> 
#> $`GO:2000112`$comment
#> [1] ""
#> 
#> $`GO:2000112`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_2000112"
#> 
#> $`GO:2000112`$localName
#> [1] "GO_2000112"
#> 
#> 
#> $`GO:0043229`
#> $`GO:0043229`$term
#> [1] "intracellular organelle"
#> 
#> $`GO:0043229`$label
#> [1] "intracellular organelle"
#> 
#> $`GO:0043229`$obsolete
#> [1] FALSE
#> 
#> $`GO:0043229`$goId
#> [1] "GO:0043229"
#> 
#> $`GO:0043229`$comment
#> [1] ""
#> 
#> $`GO:0043229`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0043229"
#> 
#> $`GO:0043229`$localName
#> [1] "GO_0043229"
#> 
#> 
#> $`GO:0043228`
#> $`GO:0043228`$term
#> [1] "non-membrane-bounded organelle"
#> 
#> $`GO:0043228`$label
#> [1] "non-membrane-bounded organelle"
#> 
#> $`GO:0043228`$obsolete
#> [1] FALSE
#> 
#> $`GO:0043228`$goId
#> [1] "GO:0043228"
#> 
#> $`GO:0043228`$comment
#> [1] ""
#> 
#> $`GO:0043228`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0043228"
#> 
#> $`GO:0043228`$localName
#> [1] "GO_0043228"
#> 
#> 
#> $`GO:0031333`
#> $`GO:0031333`$term
#> [1] "negative regulation of protein-containing complex assembly"
#> 
#> $`GO:0031333`$label
#> [1] "negative regulation of protein-containing complex assembly"
#> 
#> $`GO:0031333`$obsolete
#> [1] FALSE
#> 
#> $`GO:0031333`$goId
#> [1] "GO:0031333"
#> 
#> $`GO:0031333`$comment
#> [1] ""
#> 
#> $`GO:0031333`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0031333"
#> 
#> $`GO:0031333`$localName
#> [1] "GO_0031333"
#> 
#> 
#> $`GO:0019222`
#> $`GO:0019222`$term
#> [1] "regulation of metabolic process"
#> 
#> $`GO:0019222`$label
#> [1] "regulation of metabolic process"
#> 
#> $`GO:0019222`$obsolete
#> [1] FALSE
#> 
#> $`GO:0019222`$goId
#> [1] "GO:0019222"
#> 
#> $`GO:0019222`$comment
#> [1] ""
#> 
#> $`GO:0019222`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0019222"
#> 
#> $`GO:0019222`$localName
#> [1] "GO_0019222"
#> 
#> 
#> $`GO:0050686`
#> $`GO:0050686`$term
#> [1] "negative regulation of mRNA processing"
#> 
#> $`GO:0050686`$label
#> [1] "negative regulation of mRNA processing"
#> 
#> $`GO:0050686`$obsolete
#> [1] FALSE
#> 
#> $`GO:0050686`$goId
#> [1] "GO:0050686"
#> 
#> $`GO:0050686`$comment
#> [1] ""
#> 
#> $`GO:0050686`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0050686"
#> 
#> $`GO:0050686`$localName
#> [1] "GO_0050686"
#> 
#> 
#> $`GO:0050321`
#> $`GO:0050321`$term
#> [1] "tau-protein kinase activity"
#> 
#> $`GO:0050321`$label
#> [1] "tau-protein kinase activity"
#> 
#> $`GO:0050321`$obsolete
#> [1] FALSE
#> 
#> $`GO:0050321`$goId
#> [1] "GO:0050321"
#> 
#> $`GO:0050321`$comment
#> [1] ""
#> 
#> $`GO:0050321`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0050321"
#> 
#> $`GO:0050321`$localName
#> [1] "GO_0050321"
#> 
#> 
#> $`GO:0031328`
#> $`GO:0031328`$term
#> [1] "positive regulation of cellular biosynthetic process"
#> 
#> $`GO:0031328`$label
#> [1] "positive regulation of cellular biosynthetic process"
#> 
#> $`GO:0031328`$obsolete
#> [1] FALSE
#> 
#> $`GO:0031328`$goId
#> [1] "GO:0031328"
#> 
#> $`GO:0031328`$comment
#> [1] ""
#> 
#> $`GO:0031328`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0031328"
#> 
#> $`GO:0031328`$localName
#> [1] "GO_0031328"
#> 
#> 
#> $`GO:0050684`
#> $`GO:0050684`$term
#> [1] "regulation of mRNA processing"
#> 
#> $`GO:0050684`$label
#> [1] "regulation of mRNA processing"
#> 
#> $`GO:0050684`$obsolete
#> [1] FALSE
#> 
#> $`GO:0050684`$goId
#> [1] "GO:0050684"
#> 
#> $`GO:0050684`$comment
#> [1] ""
#> 
#> $`GO:0050684`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0050684"
#> 
#> $`GO:0050684`$localName
#> [1] "GO_0050684"
#> 
#> 
#> $`GO:0031326`
#> $`GO:0031326`$term
#> [1] "regulation of cellular biosynthetic process"
#> 
#> $`GO:0031326`$label
#> [1] "regulation of cellular biosynthetic process"
#> 
#> $`GO:0031326`$obsolete
#> [1] FALSE
#> 
#> $`GO:0031326`$goId
#> [1] "GO:0031326"
#> 
#> $`GO:0031326`$comment
#> [1] ""
#> 
#> $`GO:0031326`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0031326"
#> 
#> $`GO:0031326`$localName
#> [1] "GO_0031326"
#> 
#> 
#> $`GO:0038083`
#> $`GO:0038083`$term
#> [1] "peptidyl-tyrosine autophosphorylation"
#> 
#> $`GO:0038083`$label
#> [1] "peptidyl-tyrosine autophosphorylation"
#> 
#> $`GO:0038083`$obsolete
#> [1] FALSE
#> 
#> $`GO:0038083`$goId
#> [1] "GO:0038083"
#> 
#> $`GO:0038083`$comment
#> [1] ""
#> 
#> $`GO:0038083`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0038083"
#> 
#> $`GO:0038083`$localName
#> [1] "GO_0038083"
#> 
#> 
#> $`GO:0031324`
#> $`GO:0031324`$term
#> [1] "negative regulation of cellular metabolic process"
#> 
#> $`GO:0031324`$label
#> [1] "negative regulation of cellular metabolic process"
#> 
#> $`GO:0031324`$obsolete
#> [1] FALSE
#> 
#> $`GO:0031324`$goId
#> [1] "GO:0031324"
#> 
#> $`GO:0031324`$comment
#> [1] ""
#> 
#> $`GO:0031324`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0031324"
#> 
#> $`GO:0031324`$localName
#> [1] "GO_0031324"
#> 
#> 
#> $`GO:0031325`
#> $`GO:0031325`$term
#> [1] "positive regulation of cellular metabolic process"
#> 
#> $`GO:0031325`$label
#> [1] "positive regulation of cellular metabolic process"
#> 
#> $`GO:0031325`$obsolete
#> [1] FALSE
#> 
#> $`GO:0031325`$goId
#> [1] "GO:0031325"
#> 
#> $`GO:0031325`$comment
#> [1] ""
#> 
#> $`GO:0031325`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0031325"
#> 
#> $`GO:0031325`$localName
#> [1] "GO_0031325"
#> 
#> 
#> $`GO:0043233`
#> $`GO:0043233`$term
#> [1] "organelle lumen"
#> 
#> $`GO:0043233`$label
#> [1] "organelle lumen"
#> 
#> $`GO:0043233`$obsolete
#> [1] FALSE
#> 
#> $`GO:0043233`$goId
#> [1] "GO:0043233"
#> 
#> $`GO:0043233`$comment
#> [1] ""
#> 
#> $`GO:0043233`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0043233"
#> 
#> $`GO:0043233`$localName
#> [1] "GO_0043233"
#> 
#> 
#> $`GO:0045893`
#> $`GO:0045893`$term
#> [1] "positive regulation of transcription, DNA-templated"
#> 
#> $`GO:0045893`$label
#> [1] "positive regulation of transcription, DNA-templated"
#> 
#> $`GO:0045893`$obsolete
#> [1] FALSE
#> 
#> $`GO:0045893`$goId
#> [1] "GO:0045893"
#> 
#> $`GO:0045893`$comment
#> [1] ""
#> 
#> $`GO:0045893`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0045893"
#> 
#> $`GO:0045893`$localName
#> [1] "GO_0045893"
#> 
#> 
#> $`GO:0010628`
#> $`GO:0010628`$term
#> [1] "positive regulation of gene expression"
#> 
#> $`GO:0010628`$label
#> [1] "positive regulation of gene expression"
#> 
#> $`GO:0010628`$obsolete
#> [1] FALSE
#> 
#> $`GO:0010628`$goId
#> [1] "GO:0010628"
#> 
#> $`GO:0010628`$comment
#> [1] ""
#> 
#> $`GO:0010628`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0010628"
#> 
#> $`GO:0010628`$localName
#> [1] "GO_0010628"
#> 
#> 
#> $`GO:0016607`
#> $`GO:0016607`$term
#> [1] "nuclear speck"
#> 
#> $`GO:0016607`$label
#> [1] "nuclear speck"
#> 
#> $`GO:0016607`$obsolete
#> [1] FALSE
#> 
#> $`GO:0016607`$goId
#> [1] "GO:0016607"
#> 
#> $`GO:0016607`$comment
#> [1] ""
#> 
#> $`GO:0016607`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0016607"
#> 
#> $`GO:0016607`$localName
#> [1] "GO_0016607"
#> 
#> 
#> $`GO:0010629`
#> $`GO:0010629`$term
#> [1] "negative regulation of gene expression"
#> 
#> $`GO:0010629`$label
#> [1] "negative regulation of gene expression"
#> 
#> $`GO:0010629`$obsolete
#> [1] FALSE
#> 
#> $`GO:0010629`$goId
#> [1] "GO:0010629"
#> 
#> $`GO:0010629`$comment
#> [1] "This term covers any process that negatively regulates the rate of production of a mature gene product, and so includes processes that negatively regulate that rate by reducing the level, stability or availability of intermediates in the process of gene expression. For example, it covers any process that reduces the level, stability or availability of mRNA or circRNA for translation and thereby reduces the rate of production of the encoded protein via translation."
#> 
#> $`GO:0010629`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0010629"
#> 
#> $`GO:0010629`$localName
#> [1] "GO_0010629"
#> 
#> 
#> $`GO:0000381`
#> $`GO:0000381`$term
#> [1] "regulation of alternative mRNA splicing, via spliceosome"
#> 
#> $`GO:0000381`$label
#> [1] "regulation of alternative mRNA splicing, via spliceosome"
#> 
#> $`GO:0000381`$obsolete
#> [1] FALSE
#> 
#> $`GO:0000381`$goId
#> [1] "GO:0000381"
#> 
#> $`GO:0000381`$comment
#> [1] ""
#> 
#> $`GO:0000381`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0000381"
#> 
#> $`GO:0000381`$localName
#> [1] "GO_0000381"
#> 
#> 
#> $`GO:0043232`
#> $`GO:0043232`$term
#> [1] "intracellular non-membrane-bounded organelle"
#> 
#> $`GO:0043232`$label
#> [1] "intracellular non-membrane-bounded organelle"
#> 
#> $`GO:0043232`$obsolete
#> [1] FALSE
#> 
#> $`GO:0043232`$goId
#> [1] "GO:0043232"
#> 
#> $`GO:0043232`$comment
#> [1] ""
#> 
#> $`GO:0043232`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0043232"
#> 
#> $`GO:0043232`$localName
#> [1] "GO_0043232"
#> 
#> 
#> $`GO:0043231`
#> $`GO:0043231`$term
#> [1] "intracellular membrane-bounded organelle"
#> 
#> $`GO:0043231`$label
#> [1] "intracellular membrane-bounded organelle"
#> 
#> $`GO:0043231`$obsolete
#> [1] FALSE
#> 
#> $`GO:0043231`$goId
#> [1] "GO:0043231"
#> 
#> $`GO:0043231`$comment
#> [1] ""
#> 
#> $`GO:0043231`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0043231"
#> 
#> $`GO:0043231`$localName
#> [1] "GO_0043231"
#> 
#> 
#> $`GO:0036211`
#> $`GO:0036211`$term
#> [1] "protein modification process"
#> 
#> $`GO:0036211`$label
#> [1] "protein modification process"
#> 
#> $`GO:0036211`$obsolete
#> [1] FALSE
#> 
#> $`GO:0036211`$goId
#> [1] "GO:0036211"
#> 
#> $`GO:0036211`$comment
#> [1] ""
#> 
#> $`GO:0036211`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0036211"
#> 
#> $`GO:0036211`$localName
#> [1] "GO_0036211"
#> 
#> 
#> $`GO:0060255`
#> $`GO:0060255`$term
#> [1] "regulation of macromolecule metabolic process"
#> 
#> $`GO:0060255`$label
#> [1] "regulation of macromolecule metabolic process"
#> 
#> $`GO:0060255`$obsolete
#> [1] FALSE
#> 
#> $`GO:0060255`$goId
#> [1] "GO:0060255"
#> 
#> $`GO:0060255`$comment
#> [1] ""
#> 
#> $`GO:0060255`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0060255"
#> 
#> $`GO:0060255`$localName
#> [1] "GO_0060255"
#> 
#> 
#> $`GO:0016604`
#> $`GO:0016604`$term
#> [1] "nuclear body"
#> 
#> $`GO:0016604`$label
#> [1] "nuclear body"
#> 
#> $`GO:0016604`$obsolete
#> [1] FALSE
#> 
#> $`GO:0016604`$goId
#> [1] "GO:0016604"
#> 
#> $`GO:0016604`$comment
#> [1] ""
#> 
#> $`GO:0016604`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0016604"
#> 
#> $`GO:0016604`$localName
#> [1] "GO_0016604"
#> 
#> 
#> $`GO:1902680`
#> $`GO:1902680`$term
#> [1] "positive regulation of RNA biosynthetic process"
#> 
#> $`GO:1902680`$label
#> [1] "positive regulation of RNA biosynthetic process"
#> 
#> $`GO:1902680`$obsolete
#> [1] FALSE
#> 
#> $`GO:1902680`$goId
#> [1] "GO:1902680"
#> 
#> $`GO:1902680`$comment
#> [1] ""
#> 
#> $`GO:1902680`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_1902680"
#> 
#> $`GO:1902680`$localName
#> [1] "GO_1902680"
#> 
#> 
#> $`GO:0080090`
#> $`GO:0080090`$term
#> [1] "regulation of primary metabolic process"
#> 
#> $`GO:0080090`$label
#> [1] "regulation of primary metabolic process"
#> 
#> $`GO:0080090`$obsolete
#> [1] FALSE
#> 
#> $`GO:0080090`$goId
#> [1] "GO:0080090"
#> 
#> $`GO:0080090`$comment
#> [1] ""
#> 
#> $`GO:0080090`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0080090"
#> 
#> $`GO:0080090`$localName
#> [1] "GO_0080090"
#> 
#> 
#> $`GO:0018105`
#> $`GO:0018105`$term
#> [1] "peptidyl-serine phosphorylation"
#> 
#> $`GO:0018105`$label
#> [1] "peptidyl-serine phosphorylation"
#> 
#> $`GO:0018105`$obsolete
#> [1] FALSE
#> 
#> $`GO:0018105`$goId
#> [1] "GO:0018105"
#> 
#> $`GO:0018105`$comment
#> [1] ""
#> 
#> $`GO:0018105`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0018105"
#> 
#> $`GO:0018105`$localName
#> [1] "GO_0018105"
#> 
#> 
#> $`GO:0071704`
#> $`GO:0071704`$term
#> [1] "organic substance metabolic process"
#> 
#> $`GO:0071704`$label
#> [1] "organic substance metabolic process"
#> 
#> $`GO:0071704`$obsolete
#> [1] FALSE
#> 
#> $`GO:0071704`$goId
#> [1] "GO:0071704"
#> 
#> $`GO:0071704`$comment
#> [1] ""
#> 
#> $`GO:0071704`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0071704"
#> 
#> $`GO:0071704`$localName
#> [1] "GO_0071704"
#> 
#> 
#> $`GO:0018108`
#> $`GO:0018108`$term
#> [1] "peptidyl-tyrosine phosphorylation"
#> 
#> $`GO:0018108`$label
#> [1] "peptidyl-tyrosine phosphorylation"
#> 
#> $`GO:0018108`$obsolete
#> [1] FALSE
#> 
#> $`GO:0018108`$goId
#> [1] "GO:0018108"
#> 
#> $`GO:0018108`$comment
#> [1] ""
#> 
#> $`GO:0018108`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0018108"
#> 
#> $`GO:0018108`$localName
#> [1] "GO_0018108"
#> 
#> 
#> $`GO:0018107`
#> $`GO:0018107`$term
#> [1] "peptidyl-threonine phosphorylation"
#> 
#> $`GO:0018107`$label
#> [1] "peptidyl-threonine phosphorylation"
#> 
#> $`GO:0018107`$obsolete
#> [1] FALSE
#> 
#> $`GO:0018107`$goId
#> [1] "GO:0018107"
#> 
#> $`GO:0018107`$comment
#> [1] ""
#> 
#> $`GO:0018107`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0018107"
#> 
#> $`GO:0018107`$localName
#> [1] "GO_0018107"
#> 
#> 
#> $`GO:0031323`
#> $`GO:0031323`$term
#> [1] "regulation of cellular metabolic process"
#> 
#> $`GO:0031323`$label
#> [1] "regulation of cellular metabolic process"
#> 
#> $`GO:0031323`$obsolete
#> [1] FALSE
#> 
#> $`GO:0031323`$goId
#> [1] "GO:0031323"
#> 
#> $`GO:0031323`$comment
#> [1] ""
#> 
#> $`GO:0031323`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0031323"
#> 
#> $`GO:0031323`$localName
#> [1] "GO_0031323"
#> 
#> 
#> $`GO:0006807`
#> $`GO:0006807`$term
#> [1] "nitrogen compound metabolic process"
#> 
#> $`GO:0006807`$label
#> [1] "nitrogen compound metabolic process"
#> 
#> $`GO:0006807`$obsolete
#> [1] FALSE
#> 
#> $`GO:0006807`$goId
#> [1] "GO:0006807"
#> 
#> $`GO:0006807`$comment
#> [1] ""
#> 
#> $`GO:0006807`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0006807"
#> 
#> $`GO:0006807`$localName
#> [1] "GO_0006807"
#> 
#> 
#> $`GO:0110165`
#> $`GO:0110165`$term
#> [1] "cellular anatomical entity"
#> 
#> $`GO:0110165`$label
#> [1] "cellular anatomical entity"
#> 
#> $`GO:0110165`$obsolete
#> [1] FALSE
#> 
#> $`GO:0110165`$goId
#> [1] "GO:0110165"
#> 
#> $`GO:0110165`$comment
#> [1] ""
#> 
#> $`GO:0110165`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0110165"
#> 
#> $`GO:0110165`$localName
#> [1] "GO_0110165"
#> 
#> 
#> $`GO:0032886`
#> $`GO:0032886`$term
#> [1] "regulation of microtubule-based process"
#> 
#> $`GO:0032886`$label
#> [1] "regulation of microtubule-based process"
#> 
#> $`GO:0032886`$obsolete
#> [1] FALSE
#> 
#> $`GO:0032886`$goId
#> [1] "GO:0032886"
#> 
#> $`GO:0032886`$comment
#> [1] ""
#> 
#> $`GO:0032886`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0032886"
#> 
#> $`GO:0032886`$localName
#> [1] "GO_0032886"
#> 
#> 
#> $`GO:0043005`
#> $`GO:0043005`$term
#> [1] "neuron projection"
#> 
#> $`GO:0043005`$label
#> [1] "neuron projection"
#> 
#> $`GO:0043005`$obsolete
#> [1] FALSE
#> 
#> $`GO:0043005`$goId
#> [1] "GO:0043005"
#> 
#> $`GO:0043005`$comment
#> [1] ""
#> 
#> $`GO:0043005`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0043005"
#> 
#> $`GO:0043005`$localName
#> [1] "GO_0043005"
#> 
#> 
#> $`GO:0010639`
#> $`GO:0010639`$term
#> [1] "negative regulation of organelle organization"
#> 
#> $`GO:0010639`$label
#> [1] "negative regulation of organelle organization"
#> 
#> $`GO:0010639`$obsolete
#> [1] FALSE
#> 
#> $`GO:0010639`$goId
#> [1] "GO:0010639"
#> 
#> $`GO:0010639`$comment
#> [1] ""
#> 
#> $`GO:0010639`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0010639"
#> 
#> $`GO:0010639`$localName
#> [1] "GO_0010639"
#> 
#> 
#> $`GO:0043484`
#> $`GO:0043484`$term
#> [1] "regulation of RNA splicing"
#> 
#> $`GO:0043484`$label
#> [1] "regulation of RNA splicing"
#> 
#> $`GO:0043484`$obsolete
#> [1] FALSE
#> 
#> $`GO:0043484`$goId
#> [1] "GO:0043484"
#> 
#> $`GO:0043484`$comment
#> [1] ""
#> 
#> $`GO:0043484`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0043484"
#> 
#> $`GO:0043484`$localName
#> [1] "GO_0043484"
#> 
#> 
#> $`GO:0140110`
#> $`GO:0140110`$term
#> [1] "transcription regulator activity"
#> 
#> $`GO:0140110`$label
#> [1] "transcription regulator activity"
#> 
#> $`GO:0140110`$obsolete
#> [1] FALSE
#> 
#> $`GO:0140110`$goId
#> [1] "GO:0140110"
#> 
#> $`GO:0140110`$comment
#> [1] ""
#> 
#> $`GO:0140110`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0140110"
#> 
#> $`GO:0140110`$localName
#> [1] "GO_0140110"
#> 
#> 
#> $`GO:0009889`
#> $`GO:0009889`$term
#> [1] "regulation of biosynthetic process"
#> 
#> $`GO:0009889`$label
#> [1] "regulation of biosynthetic process"
#> 
#> $`GO:0009889`$obsolete
#> [1] FALSE
#> 
#> $`GO:0009889`$goId
#> [1] "GO:0009889"
#> 
#> $`GO:0009889`$comment
#> [1] ""
#> 
#> $`GO:0009889`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0009889"
#> 
#> $`GO:0009889`$localName
#> [1] "GO_0009889"
#> 
#> 
#> $`GO:0090312`
#> $`GO:0090312`$term
#> [1] "positive regulation of protein deacetylation"
#> 
#> $`GO:0090312`$label
#> [1] "positive regulation of protein deacetylation"
#> 
#> $`GO:0090312`$obsolete
#> [1] FALSE
#> 
#> $`GO:0090312`$goId
#> [1] "GO:0090312"
#> 
#> $`GO:0090312`$comment
#> [1] ""
#> 
#> $`GO:0090312`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0090312"
#> 
#> $`GO:0090312`$localName
#> [1] "GO_0090312"
#> 
#> 
#> $`GO:0090311`
#> $`GO:0090311`$term
#> [1] "regulation of protein deacetylation"
#> 
#> $`GO:0090311`$label
#> [1] "regulation of protein deacetylation"
#> 
#> $`GO:0090311`$obsolete
#> [1] FALSE
#> 
#> $`GO:0090311`$goId
#> [1] "GO:0090311"
#> 
#> $`GO:0090311`$comment
#> [1] ""
#> 
#> $`GO:0090311`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0090311"
#> 
#> $`GO:0090311`$localName
#> [1] "GO_0090311"
#> 
#> 
#> $`GO:0048024`
#> $`GO:0048024`$term
#> [1] "regulation of mRNA splicing, via spliceosome"
#> 
#> $`GO:0048024`$label
#> [1] "regulation of mRNA splicing, via spliceosome"
#> 
#> $`GO:0048024`$obsolete
#> [1] FALSE
#> 
#> $`GO:0048024`$goId
#> [1] "GO:0048024"
#> 
#> $`GO:0048024`$comment
#> [1] ""
#> 
#> $`GO:0048024`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0048024"
#> 
#> $`GO:0048024`$localName
#> [1] "GO_0048024"
#> 
#> 
#> $`GO:0006468`
#> $`GO:0006468`$term
#> [1] "protein phosphorylation"
#> 
#> $`GO:0006468`$label
#> [1] "protein phosphorylation"
#> 
#> $`GO:0006468`$obsolete
#> [1] FALSE
#> 
#> $`GO:0006468`$goId
#> [1] "GO:0006468"
#> 
#> $`GO:0006468`$comment
#> [1] ""
#> 
#> $`GO:0006468`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0006468"
#> 
#> $`GO:0006468`$localName
#> [1] "GO_0006468"
#> 
#> 
#> $`GO:0006464`
#> $`GO:0006464`$term
#> [1] "cellular protein modification process"
#> 
#> $`GO:0006464`$label
#> [1] "cellular protein modification process"
#> 
#> $`GO:0006464`$obsolete
#> [1] FALSE
#> 
#> $`GO:0006464`$goId
#> [1] "GO:0006464"
#> 
#> $`GO:0006464`$comment
#> [1] ""
#> 
#> $`GO:0006464`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0006464"
#> 
#> $`GO:0006464`$localName
#> [1] "GO_0006464"
#> 
#> 
#> $`GO:0010604`
#> $`GO:0010604`$term
#> [1] "positive regulation of macromolecule metabolic process"
#> 
#> $`GO:0010604`$label
#> [1] "positive regulation of macromolecule metabolic process"
#> 
#> $`GO:0010604`$obsolete
#> [1] FALSE
#> 
#> $`GO:0010604`$goId
#> [1] "GO:0010604"
#> 
#> $`GO:0010604`$comment
#> [1] ""
#> 
#> $`GO:0010604`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0010604"
#> 
#> $`GO:0010604`$localName
#> [1] "GO_0010604"
#> 
#> 
#> $`GO:1901363`
#> $`GO:1901363`$term
#> [1] "heterocyclic compound binding"
#> 
#> $`GO:1901363`$label
#> [1] "heterocyclic compound binding"
#> 
#> $`GO:1901363`$obsolete
#> [1] FALSE
#> 
#> $`GO:1901363`$goId
#> [1] "GO:1901363"
#> 
#> $`GO:1901363`$comment
#> [1] ""
#> 
#> $`GO:1901363`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_1901363"
#> 
#> $`GO:1901363`$localName
#> [1] "GO_1901363"
#> 
#> 
#> $`GO:0043254`
#> $`GO:0043254`$term
#> [1] "regulation of protein-containing complex assembly"
#> 
#> $`GO:0043254`$label
#> [1] "regulation of protein-containing complex assembly"
#> 
#> $`GO:0043254`$obsolete
#> [1] FALSE
#> 
#> $`GO:0043254`$goId
#> [1] "GO:0043254"
#> 
#> $`GO:0043254`$comment
#> [1] ""
#> 
#> $`GO:0043254`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0043254"
#> 
#> $`GO:0043254`$localName
#> [1] "GO_0043254"
#> 
#> 
#> $`GO:0048025`
#> $`GO:0048025`$term
#> [1] "negative regulation of mRNA splicing, via spliceosome"
#> 
#> $`GO:0048025`$label
#> [1] "negative regulation of mRNA splicing, via spliceosome"
#> 
#> $`GO:0048025`$obsolete
#> [1] FALSE
#> 
#> $`GO:0048025`$goId
#> [1] "GO:0048025"
#> 
#> $`GO:0048025`$comment
#> [1] ""
#> 
#> $`GO:0048025`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0048025"
#> 
#> $`GO:0048025`$localName
#> [1] "GO_0048025"
#> 
#> 
#> $`GO:0010605`
#> $`GO:0010605`$term
#> [1] "negative regulation of macromolecule metabolic process"
#> 
#> $`GO:0010605`$label
#> [1] "negative regulation of macromolecule metabolic process"
#> 
#> $`GO:0010605`$obsolete
#> [1] FALSE
#> 
#> $`GO:0010605`$goId
#> [1] "GO:0010605"
#> 
#> $`GO:0010605`$comment
#> [1] ""
#> 
#> $`GO:0010605`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0010605"
#> 
#> $`GO:0010605`$localName
#> [1] "GO_0010605"
#> 
#> 
#> $`GO:0018209`
#> $`GO:0018209`$term
#> [1] "peptidyl-serine modification"
#> 
#> $`GO:0018209`$label
#> [1] "peptidyl-serine modification"
#> 
#> $`GO:0018209`$obsolete
#> [1] FALSE
#> 
#> $`GO:0018209`$goId
#> [1] "GO:0018209"
#> 
#> $`GO:0018209`$comment
#> [1] ""
#> 
#> $`GO:0018209`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0018209"
#> 
#> $`GO:0018209`$localName
#> [1] "GO_0018209"
#> 
#> 
#> $`GO:0019538`
#> $`GO:0019538`$term
#> [1] "protein metabolic process"
#> 
#> $`GO:0019538`$label
#> [1] "protein metabolic process"
#> 
#> $`GO:0019538`$obsolete
#> [1] FALSE
#> 
#> $`GO:0019538`$goId
#> [1] "GO:0019538"
#> 
#> $`GO:0019538`$comment
#> [1] ""
#> 
#> $`GO:0019538`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0019538"
#> 
#> $`GO:0019538`$localName
#> [1] "GO_0019538"
#> 
#> 
#> $`GO:0008092`
#> $`GO:0008092`$term
#> [1] "cytoskeletal protein binding"
#> 
#> $`GO:0008092`$label
#> [1] "cytoskeletal protein binding"
#> 
#> $`GO:0008092`$obsolete
#> [1] FALSE
#> 
#> $`GO:0008092`$goId
#> [1] "GO:0008092"
#> 
#> $`GO:0008092`$comment
#> [1] ""
#> 
#> $`GO:0008092`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0008092"
#> 
#> $`GO:0008092`$localName
#> [1] "GO_0008092"
#> 
#> 
#> $`GO:0032991`
#> $`GO:0032991`$term
#> [1] "protein-containing complex"
#> 
#> $`GO:0032991`$label
#> [1] "protein-containing complex"
#> 
#> $`GO:0032991`$obsolete
#> [1] FALSE
#> 
#> $`GO:0032991`$goId
#> [1] "GO:0032991"
#> 
#> $`GO:0032991`$comment
#> [1] "A protein complex in this context is meant as a stable set of interacting proteins which can be co-purified by an acceptable method, and where the complex has been shown to exist as an isolated, functional unit in vivo. Acceptable experimental methods include stringent protein purification followed by detection of protein interaction. The following methods should be considered non-acceptable: simple immunoprecipitation, pull-down experiments from cell extracts without further purification, colocalization and 2-hybrid screening. Interactions that should not be captured as protein complexes include: 1) enzyme/substrate, receptor/ligand or any similar transient interactions, unless these are a critical part of the complex assembly or are required e.g. for the receptor to be functional; 2) proteins associated in a pull-down/co-immunoprecipitation assay with no functional link or any evidence that this is a defined biological entity rather than a loose-affinity complex; 3) any complex where the only evidence is based on genetic interaction data; 4) partial complexes, where some subunits (e.g. transmembrane ones) cannot be expressed as recombinant proteins and are excluded from experiments (in this case, independent evidence is necessary to find out the composition of the full complex, if known). Interactions that may be captured as protein complexes include: 1) enzyme/substrate or receptor/ligand if the complex can only assemble and become functional in the presence of both classes of subunits; 2) complexes where one of the members has not been shown to be physically linked to the other(s), but is a homologue of, and has the same functionality as, a protein that has been experimentally demonstrated to form a complex with the other member(s); 3) complexes whose existence is accepted based on localization and pharmacological studies, but for which experimental evidence is not yet available for the complex as a whole."
#> 
#> $`GO:0032991`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0032991"
#> 
#> $`GO:0032991`$localName
#> [1] "GO_0032991"
#> 
#> 
#> $`GO:0033043`
#> $`GO:0033043`$term
#> [1] "regulation of organelle organization"
#> 
#> $`GO:0033043`$label
#> [1] "regulation of organelle organization"
#> 
#> $`GO:0033043`$obsolete
#> [1] FALSE
#> 
#> $`GO:0033043`$goId
#> [1] "GO:0033043"
#> 
#> $`GO:0033043`$comment
#> [1] ""
#> 
#> $`GO:0033043`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0033043"
#> 
#> $`GO:0033043`$localName
#> [1] "GO_0033043"
#> 
#> 
#> $`GO:0048156`
#> $`GO:0048156`$term
#> [1] "tau protein binding"
#> 
#> $`GO:0048156`$label
#> [1] "tau protein binding"
#> 
#> $`GO:0048156`$obsolete
#> [1] FALSE
#> 
#> $`GO:0048156`$goId
#> [1] "GO:0048156"
#> 
#> $`GO:0048156`$comment
#> [1] ""
#> 
#> $`GO:0048156`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0048156"
#> 
#> $`GO:0048156`$localName
#> [1] "GO_0048156"
#> 
#> 
#> $`GO:0098772`
#> $`GO:0098772`$term
#> [1] "molecular function regulator"
#> 
#> $`GO:0098772`$label
#> [1] "molecular function regulator"
#> 
#> $`GO:0098772`$obsolete
#> [1] FALSE
#> 
#> $`GO:0098772`$goId
#> [1] "GO:0098772"
#> 
#> $`GO:0098772`$comment
#> [1] ""
#> 
#> $`GO:0098772`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0098772"
#> 
#> $`GO:0098772`$localName
#> [1] "GO_0098772"
#> 
#> 
#> $`GO:1902904`
#> $`GO:1902904`$term
#> [1] "negative regulation of supramolecular fiber organization"
#> 
#> $`GO:1902904`$label
#> [1] "negative regulation of supramolecular fiber organization"
#> 
#> $`GO:1902904`$obsolete
#> [1] FALSE
#> 
#> $`GO:1902904`$goId
#> [1] "GO:1902904"
#> 
#> $`GO:1902904`$comment
#> [1] "HSPA8, human, P11142 in PMID:23921388 inferred from direct assay to negatively regulate fibrillation of alpha-Syn in vitro"
#> 
#> $`GO:1902904`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_1902904"
#> 
#> $`GO:1902904`$localName
#> [1] "GO_1902904"
#> 
#> 
#> $`GO:1902903`
#> $`GO:1902903`$term
#> [1] "regulation of supramolecular fiber organization"
#> 
#> $`GO:1902903`$label
#> [1] "regulation of supramolecular fiber organization"
#> 
#> $`GO:1902903`$obsolete
#> [1] FALSE
#> 
#> $`GO:1902903`$goId
#> [1] "GO:1902903"
#> 
#> $`GO:1902903`$comment
#> [1] "HSPA8, human, P11142 in PMID:23921388 inferred from direct assay to negatively regulate fibrillation of alpha-Syn in vitro"
#> 
#> $`GO:1902903`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_1902903"
#> 
#> $`GO:1902903`$localName
#> [1] "GO_1902903"
#> 
#> 
#> $`GO:0032502`
#> $`GO:0032502`$term
#> [1] "developmental process"
#> 
#> $`GO:0032502`$label
#> [1] "developmental process"
#> 
#> $`GO:0032502`$obsolete
#> [1] FALSE
#> 
#> $`GO:0032502`$goId
#> [1] "GO:0032502"
#> 
#> $`GO:0032502`$comment
#> [1] ""
#> 
#> $`GO:0032502`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0032502"
#> 
#> $`GO:0032502`$localName
#> [1] "GO_0032502"
#> 
#> 
#> $`GO:0032501`
#> $`GO:0032501`$term
#> [1] "multicellular organismal process"
#> 
#> $`GO:0032501`$label
#> [1] "multicellular organismal process"
#> 
#> $`GO:0032501`$obsolete
#> [1] FALSE
#> 
#> $`GO:0032501`$goId
#> [1] "GO:0032501"
#> 
#> $`GO:0032501`$comment
#> [1] ""
#> 
#> $`GO:0032501`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0032501"
#> 
#> $`GO:0032501`$localName
#> [1] "GO_0032501"
#> 
#> 
#> $`GO:0006355`
#> $`GO:0006355`$term
#> [1] "regulation of transcription, DNA-templated"
#> 
#> $`GO:0006355`$label
#> [1] "regulation of transcription, DNA-templated"
#> 
#> $`GO:0006355`$obsolete
#> [1] FALSE
#> 
#> $`GO:0006355`$goId
#> [1] "GO:0006355"
#> 
#> $`GO:0006355`$comment
#> [1] ""
#> 
#> $`GO:0006355`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0006355"
#> 
#> $`GO:0006355`$localName
#> [1] "GO_0006355"
#> 
#> 
#> $`GO:0046777`
#> $`GO:0046777`$term
#> [1] "protein autophosphorylation"
#> 
#> $`GO:0046777`$label
#> [1] "protein autophosphorylation"
#> 
#> $`GO:0046777`$obsolete
#> [1] FALSE
#> 
#> $`GO:0046777`$goId
#> [1] "GO:0046777"
#> 
#> $`GO:0046777`$comment
#> [1] ""
#> 
#> $`GO:0046777`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0046777"
#> 
#> $`GO:0046777`$localName
#> [1] "GO_0046777"
#> 
#> 
#> $`GO:0044237`
#> $`GO:0044237`$term
#> [1] "cellular metabolic process"
#> 
#> $`GO:0044237`$label
#> [1] "cellular metabolic process"
#> 
#> $`GO:0044237`$obsolete
#> [1] FALSE
#> 
#> $`GO:0044237`$goId
#> [1] "GO:0044237"
#> 
#> $`GO:0044237`$comment
#> [1] ""
#> 
#> $`GO:0044237`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0044237"
#> 
#> $`GO:0044237`$localName
#> [1] "GO_0044237"
#> 
#> 
#> $`GO:1903312`
#> $`GO:1903312`$term
#> [1] "negative regulation of mRNA metabolic process"
#> 
#> $`GO:1903312`$label
#> [1] "negative regulation of mRNA metabolic process"
#> 
#> $`GO:1903312`$obsolete
#> [1] FALSE
#> 
#> $`GO:1903312`$goId
#> [1] "GO:1903312"
#> 
#> $`GO:1903312`$comment
#> [1] ""
#> 
#> $`GO:1903312`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_1903312"
#> 
#> $`GO:1903312`$localName
#> [1] "GO_1903312"
#> 
#> 
#> $`GO:1903311`
#> $`GO:1903311`$term
#> [1] "regulation of mRNA metabolic process"
#> 
#> $`GO:1903311`$label
#> [1] "regulation of mRNA metabolic process"
#> 
#> $`GO:1903311`$obsolete
#> [1] FALSE
#> 
#> $`GO:1903311`$goId
#> [1] "GO:1903311"
#> 
#> $`GO:1903311`$comment
#> [1] ""
#> 
#> $`GO:1903311`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_1903311"
#> 
#> $`GO:1903311`$localName
#> [1] "GO_1903311"
#> 
#> 
#> $`GO:0140096`
#> $`GO:0140096`$term
#> [1] "catalytic activity, acting on a protein"
#> 
#> $`GO:0140096`$label
#> [1] "catalytic activity, acting on a protein"
#> 
#> $`GO:0140096`$obsolete
#> [1] FALSE
#> 
#> $`GO:0140096`$goId
#> [1] "GO:0140096"
#> 
#> $`GO:0140096`$comment
#> [1] ""
#> 
#> $`GO:0140096`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0140096"
#> 
#> $`GO:0140096`$localName
#> [1] "GO_0140096"
#> 
#> 
#> $`GO:0120025`
#> $`GO:0120025`$term
#> [1] "plasma membrane bounded cell projection"
#> 
#> $`GO:0120025`$label
#> [1] "plasma membrane bounded cell projection"
#> 
#> $`GO:0120025`$obsolete
#> [1] FALSE
#> 
#> $`GO:0120025`$goId
#> [1] "GO:0120025"
#> 
#> $`GO:0120025`$comment
#> [1] ""
#> 
#> $`GO:0120025`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0120025"
#> 
#> $`GO:0120025`$localName
#> [1] "GO_0120025"
#> 
#> 
#> $`GO:0070507`
#> $`GO:0070507`$term
#> [1] "regulation of microtubule cytoskeleton organization"
#> 
#> $`GO:0070507`$label
#> [1] "regulation of microtubule cytoskeleton organization"
#> 
#> $`GO:0070507`$obsolete
#> [1] FALSE
#> 
#> $`GO:0070507`$goId
#> [1] "GO:0070507"
#> 
#> $`GO:0070507`$comment
#> [1] ""
#> 
#> $`GO:0070507`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0070507"
#> 
#> $`GO:0070507`$localName
#> [1] "GO_0070507"
#> 
#> 
#> $`GO:0044238`
#> $`GO:0044238`$term
#> [1] "primary metabolic process"
#> 
#> $`GO:0044238`$label
#> [1] "primary metabolic process"
#> 
#> $`GO:0044238`$obsolete
#> [1] FALSE
#> 
#> $`GO:0044238`$goId
#> [1] "GO:0044238"
#> 
#> $`GO:0044238`$comment
#> [1] ""
#> 
#> $`GO:0044238`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0044238"
#> 
#> $`GO:0044238`$localName
#> [1] "GO_0044238"
#> 
#> 
#> $`GO:0009987`
#> $`GO:0009987`$term
#> [1] "cellular process"
#> 
#> $`GO:0009987`$label
#> [1] "cellular process"
#> 
#> $`GO:0009987`$obsolete
#> [1] FALSE
#> 
#> $`GO:0009987`$goId
#> [1] "GO:0009987"
#> 
#> $`GO:0009987`$comment
#> [1] ""
#> 
#> $`GO:0009987`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0009987"
#> 
#> $`GO:0009987`$localName
#> [1] "GO_0009987"
#> 
#> 
#> $`GO:0018212`
#> $`GO:0018212`$term
#> [1] "peptidyl-tyrosine modification"
#> 
#> $`GO:0018212`$label
#> [1] "peptidyl-tyrosine modification"
#> 
#> $`GO:0018212`$obsolete
#> [1] FALSE
#> 
#> $`GO:0018212`$goId
#> [1] "GO:0018212"
#> 
#> $`GO:0018212`$comment
#> [1] ""
#> 
#> $`GO:0018212`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0018212"
#> 
#> $`GO:0018212`$localName
#> [1] "GO_0018212"
#> 
#> 
#> $`GO:0018210`
#> $`GO:0018210`$term
#> [1] "peptidyl-threonine modification"
#> 
#> $`GO:0018210`$label
#> [1] "peptidyl-threonine modification"
#> 
#> $`GO:0018210`$obsolete
#> [1] FALSE
#> 
#> $`GO:0018210`$goId
#> [1] "GO:0018210"
#> 
#> $`GO:0018210`$comment
#> [1] ""
#> 
#> $`GO:0018210`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0018210"
#> 
#> $`GO:0018210`$localName
#> [1] "GO_0018210"
#> 
#> 
#> $`GO:0016032`
#> $`GO:0016032`$term
#> [1] "viral process"
#> 
#> $`GO:0016032`$label
#> [1] "viral process"
#> 
#> $`GO:0016032`$obsolete
#> [1] FALSE
#> 
#> $`GO:0016032`$goId
#> [1] "GO:0016032"
#> 
#> $`GO:0016032`$comment
#> [1] "See also the biological process terms 'viral infectious cycle ; GO:0019058' and 'lysogeny ; GO:0030069'."
#> 
#> $`GO:0016032`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0016032"
#> 
#> $`GO:0016032`$localName
#> [1] "GO_0016032"
#> 
#> 
#> $`GO:0097447`
#> $`GO:0097447`$term
#> [1] "dendritic tree"
#> 
#> $`GO:0097447`$label
#> [1] "dendritic tree"
#> 
#> $`GO:0097447`$obsolete
#> [1] FALSE
#> 
#> $`GO:0097447`$goId
#> [1] "GO:0097447"
#> 
#> $`GO:0097447`$comment
#> [1] ""
#> 
#> $`GO:0097447`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0097447"
#> 
#> $`GO:0097447`$localName
#> [1] "GO_0097447"
#> 
#> 
#> $`GO:0030554`
#> $`GO:0030554`$term
#> [1] "adenyl nucleotide binding"
#> 
#> $`GO:0030554`$label
#> [1] "adenyl nucleotide binding"
#> 
#> $`GO:0030554`$obsolete
#> [1] FALSE
#> 
#> $`GO:0030554`$goId
#> [1] "GO:0030554"
#> 
#> $`GO:0030554`$comment
#> [1] ""
#> 
#> $`GO:0030554`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0030554"
#> 
#> $`GO:0030554`$localName
#> [1] "GO_0030554"
#> 
#> 
#> $`GO:0031401`
#> $`GO:0031401`$term
#> [1] "positive regulation of protein modification process"
#> 
#> $`GO:0031401`$label
#> [1] "positive regulation of protein modification process"
#> 
#> $`GO:0031401`$obsolete
#> [1] FALSE
#> 
#> $`GO:0031401`$goId
#> [1] "GO:0031401"
#> 
#> $`GO:0031401`$comment
#> [1] ""
#> 
#> $`GO:0031401`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0031401"
#> 
#> $`GO:0031401`$localName
#> [1] "GO_0031401"
#> 
#> 
#> $`GO:0042982`
#> $`GO:0042982`$term
#> [1] "amyloid precursor protein metabolic process"
#> 
#> $`GO:0042982`$label
#> [1] "amyloid precursor protein metabolic process"
#> 
#> $`GO:0042982`$obsolete
#> [1] FALSE
#> 
#> $`GO:0042982`$goId
#> [1] "GO:0042982"
#> 
#> $`GO:0042982`$comment
#> [1] ""
#> 
#> $`GO:0042982`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0042982"
#> 
#> $`GO:0042982`$localName
#> [1] "GO_0042982"
#> 
#> 
#> $`GO:1901265`
#> $`GO:1901265`$term
#> [1] "nucleoside phosphate binding"
#> 
#> $`GO:1901265`$label
#> [1] "nucleoside phosphate binding"
#> 
#> $`GO:1901265`$obsolete
#> [1] FALSE
#> 
#> $`GO:1901265`$goId
#> [1] "GO:1901265"
#> 
#> $`GO:1901265`$comment
#> [1] ""
#> 
#> $`GO:1901265`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_1901265"
#> 
#> $`GO:1901265`$localName
#> [1] "GO_1901265"
#> 
#> 
#> $`GO:0042987`
#> $`GO:0042987`$term
#> [1] "amyloid precursor protein catabolic process"
#> 
#> $`GO:0042987`$label
#> [1] "amyloid precursor protein catabolic process"
#> 
#> $`GO:0042987`$obsolete
#> [1] FALSE
#> 
#> $`GO:0042987`$goId
#> [1] "GO:0042987"
#> 
#> $`GO:0042987`$comment
#> [1] ""
#> 
#> $`GO:0042987`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0042987"
#> 
#> $`GO:0042987`$localName
#> [1] "GO_0042987"
#> 
#> 
#> $`GO:0036094`
#> $`GO:0036094`$term
#> [1] "small molecule binding"
#> 
#> $`GO:0036094`$label
#> [1] "small molecule binding"
#> 
#> $`GO:0036094`$obsolete
#> [1] FALSE
#> 
#> $`GO:0036094`$goId
#> [1] "GO:0036094"
#> 
#> $`GO:0036094`$comment
#> [1] "Small molecules in GO include monosaccharides but exclude disaccharides and polysaccharides."
#> 
#> $`GO:0036094`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0036094"
#> 
#> $`GO:0036094`$localName
#> [1] "GO_0036094"
#> 
#> 
#> $`GO:0004712`
#> $`GO:0004712`$term
#> [1] "protein serine/threonine/tyrosine kinase activity"
#> 
#> $`GO:0004712`$label
#> [1] "protein serine/threonine/tyrosine kinase activity"
#> 
#> $`GO:0004712`$obsolete
#> [1] FALSE
#> 
#> $`GO:0004712`$goId
#> [1] "GO:0004712"
#> 
#> $`GO:0004712`$comment
#> [1] ""
#> 
#> $`GO:0004712`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0004712"
#> 
#> $`GO:0004712`$localName
#> [1] "GO_0004712"
#> 
#> 
#> $`GO:0004713`
#> $`GO:0004713`$term
#> [1] "protein tyrosine kinase activity"
#> 
#> $`GO:0004713`$label
#> [1] "protein tyrosine kinase activity"
#> 
#> $`GO:0004713`$obsolete
#> [1] FALSE
#> 
#> $`GO:0004713`$goId
#> [1] "GO:0004713"
#> 
#> $`GO:0004713`$comment
#> [1] ""
#> 
#> $`GO:0004713`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0004713"
#> 
#> $`GO:0004713`$localName
#> [1] "GO_0004713"
#> 
#> 
#> $`GO:0030424`
#> $`GO:0030424`$term
#> [1] "axon"
#> 
#> $`GO:0030424`$label
#> [1] "axon"
#> 
#> $`GO:0030424`$obsolete
#> [1] FALSE
#> 
#> $`GO:0030424`$goId
#> [1] "GO:0030424"
#> 
#> $`GO:0030424`$comment
#> [1] ""
#> 
#> $`GO:0030424`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0030424"
#> 
#> $`GO:0030424`$localName
#> [1] "GO_0030424"
#> 
#> 
#> $`GO:0030425`
#> $`GO:0030425`$term
#> [1] "dendrite"
#> 
#> $`GO:0030425`$label
#> [1] "dendrite"
#> 
#> $`GO:0030425`$obsolete
#> [1] FALSE
#> 
#> $`GO:0030425`$goId
#> [1] "GO:0030425"
#> 
#> $`GO:0030425`$comment
#> [1] ""
#> 
#> $`GO:0030425`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0030425"
#> 
#> $`GO:0030425`$localName
#> [1] "GO_0030425"
#> 
#> 
#> $`GO:0005488`
#> $`GO:0005488`$term
#> [1] "binding"
#> 
#> $`GO:0005488`$label
#> [1] "binding"
#> 
#> $`GO:0005488`$obsolete
#> [1] FALSE
#> 
#> $`GO:0005488`$goId
#> [1] "GO:0005488"
#> 
#> $`GO:0005488`$comment
#> [1] "Note that this term is in the subset of terms that should not be used for direct, manual gene product annotation. Please choose a more specific child term, or request a new one if no suitable term is available. For ligands that bind to signal transducing receptors, consider the molecular function term 'receptor binding ; GO:0005102' and its children."
#> 
#> $`GO:0005488`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0005488"
#> 
#> $`GO:0005488`$localName
#> [1] "GO_0005488"
#> 
#> 
#> $`GO:0048856`
#> $`GO:0048856`$term
#> [1] "anatomical structure development"
#> 
#> $`GO:0048856`$label
#> [1] "anatomical structure development"
#> 
#> $`GO:0048856`$obsolete
#> [1] FALSE
#> 
#> $`GO:0048856`$goId
#> [1] "GO:0048856"
#> 
#> $`GO:0048856`$comment
#> [1] ""
#> 
#> $`GO:0048856`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0048856"
#> 
#> $`GO:0048856`$localName
#> [1] "GO_0048856"
#> 
#> 
#> $`GO:0043168`
#> $`GO:0043168`$term
#> [1] "anion binding"
#> 
#> $`GO:0043168`$label
#> [1] "anion binding"
#> 
#> $`GO:0043168`$obsolete
#> [1] FALSE
#> 
#> $`GO:0043168`$goId
#> [1] "GO:0043168"
#> 
#> $`GO:0043168`$comment
#> [1] ""
#> 
#> $`GO:0043168`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0043168"
#> 
#> $`GO:0043168`$localName
#> [1] "GO_0043168"
#> 
#> 
#> $`GO:0043167`
#> $`GO:0043167`$term
#> [1] "ion binding"
#> 
#> $`GO:0043167`$label
#> [1] "ion binding"
#> 
#> $`GO:0043167`$obsolete
#> [1] FALSE
#> 
#> $`GO:0043167`$goId
#> [1] "GO:0043167"
#> 
#> $`GO:0043167`$comment
#> [1] ""
#> 
#> $`GO:0043167`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0043167"
#> 
#> $`GO:0043167`$localName
#> [1] "GO_0043167"
#> 
#> 
#> $`GO:0048731`
#> $`GO:0048731`$term
#> [1] "system development"
#> 
#> $`GO:0048731`$label
#> [1] "system development"
#> 
#> $`GO:0048731`$obsolete
#> [1] FALSE
#> 
#> $`GO:0048731`$goId
#> [1] "GO:0048731"
#> 
#> $`GO:0048731`$comment
#> [1] ""
#> 
#> $`GO:0048731`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0048731"
#> 
#> $`GO:0048731`$localName
#> [1] "GO_0048731"
#> 
#> 
#> $`GO:0042995`
#> $`GO:0042995`$term
#> [1] "cell projection"
#> 
#> $`GO:0042995`$label
#> [1] "cell projection"
#> 
#> $`GO:0042995`$obsolete
#> [1] FALSE
#> 
#> $`GO:0042995`$goId
#> [1] "GO:0042995"
#> 
#> $`GO:0042995`$comment
#> [1] ""
#> 
#> $`GO:0042995`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0042995"
#> 
#> $`GO:0042995`$localName
#> [1] "GO_0042995"
#> 
#> 
#> $`GO:0043603`
#> $`GO:0043603`$term
#> [1] "cellular amide metabolic process"
#> 
#> $`GO:0043603`$label
#> [1] "cellular amide metabolic process"
#> 
#> $`GO:0043603`$obsolete
#> [1] FALSE
#> 
#> $`GO:0043603`$goId
#> [1] "GO:0043603"
#> 
#> $`GO:0043603`$comment
#> [1] ""
#> 
#> $`GO:0043603`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0043603"
#> 
#> $`GO:0043603`$localName
#> [1] "GO_0043603"
#> 
#> 
#> $`GO:0009966`
#> $`GO:0009966`$term
#> [1] "regulation of signal transduction"
#> 
#> $`GO:0009966`$label
#> [1] "regulation of signal transduction"
#> 
#> $`GO:0009966`$obsolete
#> [1] FALSE
#> 
#> $`GO:0009966`$goId
#> [1] "GO:0009966"
#> 
#> $`GO:0009966`$comment
#> [1] ""
#> 
#> $`GO:0009966`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0009966"
#> 
#> $`GO:0009966`$localName
#> [1] "GO_0009966"
#> 
#> 
#> $`GO:0009968`
#> $`GO:0009968`$term
#> [1] "negative regulation of signal transduction"
#> 
#> $`GO:0009968`$label
#> [1] "negative regulation of signal transduction"
#> 
#> $`GO:0009968`$obsolete
#> [1] FALSE
#> 
#> $`GO:0009968`$goId
#> [1] "GO:0009968"
#> 
#> $`GO:0009968`$comment
#> [1] ""
#> 
#> $`GO:0009968`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0009968"
#> 
#> $`GO:0009968`$localName
#> [1] "GO_0009968"
#> 
#> 
#> $`GO:0004715`
#> $`GO:0004715`$term
#> [1] "non-membrane spanning protein tyrosine kinase activity"
#> 
#> $`GO:0004715`$label
#> [1] "non-membrane spanning protein tyrosine kinase activity"
#> 
#> $`GO:0004715`$obsolete
#> [1] FALSE
#> 
#> $`GO:0004715`$goId
#> [1] "GO:0004715"
#> 
#> $`GO:0004715`$comment
#> [1] ""
#> 
#> $`GO:0004715`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0004715"
#> 
#> $`GO:0004715`$localName
#> [1] "GO_0004715"
#> 
#> 
#> $`GO:0043170`
#> $`GO:0043170`$term
#> [1] "macromolecule metabolic process"
#> 
#> $`GO:0043170`$label
#> [1] "macromolecule metabolic process"
#> 
#> $`GO:0043170`$obsolete
#> [1] FALSE
#> 
#> $`GO:0043170`$goId
#> [1] "GO:0043170"
#> 
#> $`GO:0043170`$comment
#> [1] ""
#> 
#> $`GO:0043170`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0043170"
#> 
#> $`GO:0043170`$localName
#> [1] "GO_0043170"
#> 
#> 
#> $`GO:0003713`
#> $`GO:0003713`$term
#> [1] "transcription coactivator activity"
#> 
#> $`GO:0003713`$label
#> [1] "transcription coactivator activity"
#> 
#> $`GO:0003713`$obsolete
#> [1] FALSE
#> 
#> $`GO:0003713`$goId
#> [1] "GO:0003713"
#> 
#> $`GO:0003713`$comment
#> [1] ""
#> 
#> $`GO:0003713`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0003713"
#> 
#> $`GO:0003713`$localName
#> [1] "GO_0003713"
#> 
#> 
#> $`GO:0003712`
#> $`GO:0003712`$term
#> [1] "transcription coregulator activity"
#> 
#> $`GO:0003712`$label
#> [1] "transcription coregulator activity"
#> 
#> $`GO:0003712`$obsolete
#> [1] FALSE
#> 
#> $`GO:0003712`$goId
#> [1] "GO:0003712"
#> 
#> $`GO:0003712`$comment
#> [1] "Curator guidance: Most transcription coregulators do not bind DNA. Those that do usually bind DNA either in a non-specific or non-direct manner. If a protein binds DNA specifically, consider annotating to GO:0003700 DNA binding transcription factor activity."
#> 
#> $`GO:0003712`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0003712"
#> 
#> $`GO:0003712`$localName
#> [1] "GO_0003712"
#> 
#> 
#> $`GO:0044260`
#> $`GO:0044260`$term
#> [1] "cellular macromolecule metabolic process"
#> 
#> $`GO:0044260`$label
#> [1] "cellular macromolecule metabolic process"
#> 
#> $`GO:0044260`$obsolete
#> [1] FALSE
#> 
#> $`GO:0044260`$goId
#> [1] "GO:0044260"
#> 
#> $`GO:0044260`$comment
#> [1] ""
#> 
#> $`GO:0044260`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0044260"
#> 
#> $`GO:0044260`$localName
#> [1] "GO_0044260"
#> 
#> 
#> $`GO:0044267`
#> $`GO:0044267`$term
#> [1] "cellular protein metabolic process"
#> 
#> $`GO:0044267`$label
#> [1] "cellular protein metabolic process"
#> 
#> $`GO:0044267`$obsolete
#> [1] FALSE
#> 
#> $`GO:0044267`$goId
#> [1] "GO:0044267"
#> 
#> $`GO:0044267`$comment
#> [1] ""
#> 
#> $`GO:0044267`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0044267"
#> 
#> $`GO:0044267`$localName
#> [1] "GO_0044267"
#> 
#> 
#> $`GO:0032272`
#> $`GO:0032272`$term
#> [1] "negative regulation of protein polymerization"
#> 
#> $`GO:0032272`$label
#> [1] "negative regulation of protein polymerization"
#> 
#> $`GO:0032272`$obsolete
#> [1] FALSE
#> 
#> $`GO:0032272`$goId
#> [1] "GO:0032272"
#> 
#> $`GO:0032272`$comment
#> [1] ""
#> 
#> $`GO:0032272`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0032272"
#> 
#> $`GO:0032272`$localName
#> [1] "GO_0032272"
#> 
#> 
#> $`GO:0032271`
#> $`GO:0032271`$term
#> [1] "regulation of protein polymerization"
#> 
#> $`GO:0032271`$label
#> [1] "regulation of protein polymerization"
#> 
#> $`GO:0032271`$obsolete
#> [1] FALSE
#> 
#> $`GO:0032271`$goId
#> [1] "GO:0032271"
#> 
#> $`GO:0032271`$comment
#> [1] ""
#> 
#> $`GO:0032271`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0032271"
#> 
#> $`GO:0032271`$localName
#> [1] "GO_0032271"
#> 
#> 
#> $`GO:0032270`
#> $`GO:0032270`$term
#> [1] "positive regulation of cellular protein metabolic process"
#> 
#> $`GO:0032270`$label
#> [1] "positive regulation of cellular protein metabolic process"
#> 
#> $`GO:0032270`$obsolete
#> [1] FALSE
#> 
#> $`GO:0032270`$goId
#> [1] "GO:0032270"
#> 
#> $`GO:0032270`$comment
#> [1] ""
#> 
#> $`GO:0032270`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0032270"
#> 
#> $`GO:0032270`$localName
#> [1] "GO_0032270"
#> 
#> 
#> $`GO:0031981`
#> $`GO:0031981`$term
#> [1] "nuclear lumen"
#> 
#> $`GO:0031981`$label
#> [1] "nuclear lumen"
#> 
#> $`GO:0031981`$obsolete
#> [1] FALSE
#> 
#> $`GO:0031981`$goId
#> [1] "GO:0031981"
#> 
#> $`GO:0031981`$comment
#> [1] ""
#> 
#> $`GO:0031981`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0031981"
#> 
#> $`GO:0031981`$localName
#> [1] "GO_0031981"
#> 
#> 
#> $`GO:0033120`
#> $`GO:0033120`$term
#> [1] "positive regulation of RNA splicing"
#> 
#> $`GO:0033120`$label
#> [1] "positive regulation of RNA splicing"
#> 
#> $`GO:0033120`$obsolete
#> [1] FALSE
#> 
#> $`GO:0033120`$goId
#> [1] "GO:0033120"
#> 
#> $`GO:0033120`$comment
#> [1] ""
#> 
#> $`GO:0033120`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0033120"
#> 
#> $`GO:0033120`$localName
#> [1] "GO_0033120"
#> 
#> 
#> $`GO:0051247`
#> $`GO:0051247`$term
#> [1] "positive regulation of protein metabolic process"
#> 
#> $`GO:0051247`$label
#> [1] "positive regulation of protein metabolic process"
#> 
#> $`GO:0051247`$obsolete
#> [1] FALSE
#> 
#> $`GO:0051247`$goId
#> [1] "GO:0051247"
#> 
#> $`GO:0051247`$comment
#> [1] ""
#> 
#> $`GO:0051247`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0051247"
#> 
#> $`GO:0051247`$localName
#> [1] "GO_0051247"
#> 
#> 
#> $`GO:0097367`
#> $`GO:0097367`$term
#> [1] "carbohydrate derivative binding"
#> 
#> $`GO:0097367`$label
#> [1] "carbohydrate derivative binding"
#> 
#> $`GO:0097367`$obsolete
#> [1] FALSE
#> 
#> $`GO:0097367`$goId
#> [1] "GO:0097367"
#> 
#> $`GO:0097367`$comment
#> [1] ""
#> 
#> $`GO:0097367`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0097367"
#> 
#> $`GO:0097367`$localName
#> [1] "GO_0097367"
#> 
#> 
#> $`GO:0051246`
#> $`GO:0051246`$term
#> [1] "regulation of protein metabolic process"
#> 
#> $`GO:0051246`$label
#> [1] "regulation of protein metabolic process"
#> 
#> $`GO:0051246`$obsolete
#> [1] FALSE
#> 
#> $`GO:0051246`$goId
#> [1] "GO:0051246"
#> 
#> $`GO:0051246`$comment
#> [1] ""
#> 
#> $`GO:0051246`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0051246"
#> 
#> $`GO:0051246`$localName
#> [1] "GO_0051246"
#> 
#> 
#> $`GO:0033119`
#> $`GO:0033119`$term
#> [1] "negative regulation of RNA splicing"
#> 
#> $`GO:0033119`$label
#> [1] "negative regulation of RNA splicing"
#> 
#> $`GO:0033119`$obsolete
#> [1] FALSE
#> 
#> $`GO:0033119`$goId
#> [1] "GO:0033119"
#> 
#> $`GO:0033119`$comment
#> [1] ""
#> 
#> $`GO:0033119`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0033119"
#> 
#> $`GO:0033119`$localName
#> [1] "GO_0033119"
#> 
#> 
#> $`GO:0051128`
#> $`GO:0051128`$term
#> [1] "regulation of cellular component organization"
#> 
#> $`GO:0051128`$label
#> [1] "regulation of cellular component organization"
#> 
#> $`GO:0051128`$obsolete
#> [1] FALSE
#> 
#> $`GO:0051128`$goId
#> [1] "GO:0051128"
#> 
#> $`GO:0051128`$comment
#> [1] ""
#> 
#> $`GO:0051128`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0051128"
#> 
#> $`GO:0051128`$localName
#> [1] "GO_0051128"
#> 
#> 
#> $`GO:0031974`
#> $`GO:0031974`$term
#> [1] "membrane-enclosed lumen"
#> 
#> $`GO:0031974`$label
#> [1] "membrane-enclosed lumen"
#> 
#> $`GO:0031974`$obsolete
#> [1] FALSE
#> 
#> $`GO:0031974`$goId
#> [1] "GO:0031974"
#> 
#> $`GO:0031974`$comment
#> [1] ""
#> 
#> $`GO:0031974`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0031974"
#> 
#> $`GO:0031974`$localName
#> [1] "GO_0031974"
#> 
#> 
#> $`GO:0051129`
#> $`GO:0051129`$term
#> [1] "negative regulation of cellular component organization"
#> 
#> $`GO:0051129`$label
#> [1] "negative regulation of cellular component organization"
#> 
#> $`GO:0051129`$obsolete
#> [1] FALSE
#> 
#> $`GO:0051129`$goId
#> [1] "GO:0051129"
#> 
#> $`GO:0051129`$comment
#> [1] ""
#> 
#> $`GO:0051129`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0051129"
#> 
#> $`GO:0051129`$localName
#> [1] "GO_0051129"
#> 
#> 
#> $`GO:0006796`
#> $`GO:0006796`$term
#> [1] "phosphate-containing compound metabolic process"
#> 
#> $`GO:0006796`$label
#> [1] "phosphate-containing compound metabolic process"
#> 
#> $`GO:0006796`$obsolete
#> [1] FALSE
#> 
#> $`GO:0006796`$goId
#> [1] "GO:0006796"
#> 
#> $`GO:0006796`$comment
#> [1] ""
#> 
#> $`GO:0006796`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0006796"
#> 
#> $`GO:0006796`$localName
#> [1] "GO_0006796"
#> 
#> 
#> $`GO:0043621`
#> $`GO:0043621`$term
#> [1] "protein self-association"
#> 
#> $`GO:0043621`$label
#> [1] "protein self-association"
#> 
#> $`GO:0043621`$obsolete
#> [1] FALSE
#> 
#> $`GO:0043621`$goId
#> [1] "GO:0043621"
#> 
#> $`GO:0043621`$comment
#> [1] ""
#> 
#> $`GO:0043621`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0043621"
#> 
#> $`GO:0043621`$localName
#> [1] "GO_0043621"
#> 
#> 
#> $`GO:0006793`
#> $`GO:0006793`$term
#> [1] "phosphorus metabolic process"
#> 
#> $`GO:0006793`$label
#> [1] "phosphorus metabolic process"
#> 
#> $`GO:0006793`$obsolete
#> [1] FALSE
#> 
#> $`GO:0006793`$goId
#> [1] "GO:0006793"
#> 
#> $`GO:0006793`$comment
#> [1] ""
#> 
#> $`GO:0006793`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0006793"
#> 
#> $`GO:0006793`$localName
#> [1] "GO_0006793"
#> 
#> 
#> $`GO:0048511`
#> $`GO:0048511`$term
#> [1] "rhythmic process"
#> 
#> $`GO:0048511`$label
#> [1] "rhythmic process"
#> 
#> $`GO:0048511`$obsolete
#> [1] FALSE
#> 
#> $`GO:0048511`$goId
#> [1] "GO:0048511"
#> 
#> $`GO:0048511`$comment
#> [1] ""
#> 
#> $`GO:0048511`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0048511"
#> 
#> $`GO:0048511`$localName
#> [1] "GO_0048511"
#> 
#> 
#> $`GO:0048519`
#> $`GO:0048519`$term
#> [1] "negative regulation of biological process"
#> 
#> $`GO:0048519`$label
#> [1] "negative regulation of biological process"
#> 
#> $`GO:0048519`$obsolete
#> [1] FALSE
#> 
#> $`GO:0048519`$goId
#> [1] "GO:0048519"
#> 
#> $`GO:0048519`$comment
#> [1] ""
#> 
#> $`GO:0048519`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0048519"
#> 
#> $`GO:0048519`$localName
#> [1] "GO_0048519"
#> 
#> 
#> $`GO:0048518`
#> $`GO:0048518`$term
#> [1] "positive regulation of biological process"
#> 
#> $`GO:0048518`$label
#> [1] "positive regulation of biological process"
#> 
#> $`GO:0048518`$obsolete
#> [1] FALSE
#> 
#> $`GO:0048518`$goId
#> [1] "GO:0048518"
#> 
#> $`GO:0048518`$comment
#> [1] ""
#> 
#> $`GO:0048518`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0048518"
#> 
#> $`GO:0048518`$localName
#> [1] "GO_0048518"
#> 
#> 
#> $`GO:0034205`
#> $`GO:0034205`$term
#> [1] "amyloid-beta formation"
#> 
#> $`GO:0034205`$label
#> [1] "amyloid-beta formation"
#> 
#> $`GO:0034205`$obsolete
#> [1] FALSE
#> 
#> $`GO:0034205`$goId
#> [1] "GO:0034205"
#> 
#> $`GO:0034205`$comment
#> [1] "Note that this term does not fall under the general GO definition for biosynthetic processes, which is 'The chemical reactions and pathways resulting in the formation of... ', because amyloid-beta can only be formed by the proteolysis of a larger molecule (see term definition). The word 'formation' is therefore used in place of biosynthesis. Also, note that this term refers to the production of the amyloid-beta polypeptide from the amyloid precursor protein (APP), and should be used to annotate e.g. secretases that cleave APP to form amyloid-beta. To annotate gene products involved in the formation of amyloid fibrils, please consider 'amyloid fibril formation' (GO:1990000)."
#> 
#> $`GO:0034205`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0034205"
#> 
#> $`GO:0034205`$localName
#> [1] "GO_0034205"
#> 
#> 
#> $`GO:0032268`
#> $`GO:0032268`$term
#> [1] "regulation of cellular protein metabolic process"
#> 
#> $`GO:0032268`$label
#> [1] "regulation of cellular protein metabolic process"
#> 
#> $`GO:0032268`$obsolete
#> [1] FALSE
#> 
#> $`GO:0032268`$goId
#> [1] "GO:0032268"
#> 
#> $`GO:0032268`$comment
#> [1] ""
#> 
#> $`GO:0032268`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0032268"
#> 
#> $`GO:0032268`$localName
#> [1] "GO_0032268"
#> 
#> 
#> $`GO:0018193`
#> $`GO:0018193`$term
#> [1] "peptidyl-amino acid modification"
#> 
#> $`GO:0018193`$label
#> [1] "peptidyl-amino acid modification"
#> 
#> $`GO:0018193`$obsolete
#> [1] FALSE
#> 
#> $`GO:0018193`$goId
#> [1] "GO:0018193"
#> 
#> $`GO:0018193`$comment
#> [1] ""
#> 
#> $`GO:0018193`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0018193"
#> 
#> $`GO:0018193`$localName
#> [1] "GO_0018193"
#> 
#> 
#> $`GO:0080135`
#> $`GO:0080135`$term
#> [1] "regulation of cellular response to stress"
#> 
#> $`GO:0080135`$label
#> [1] "regulation of cellular response to stress"
#> 
#> $`GO:0080135`$obsolete
#> [1] FALSE
#> 
#> $`GO:0080135`$goId
#> [1] "GO:0080135"
#> 
#> $`GO:0080135`$comment
#> [1] ""
#> 
#> $`GO:0080135`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0080135"
#> 
#> $`GO:0080135`$localName
#> [1] "GO_0080135"
#> 
#> 
#> $`GO:0010468`
#> $`GO:0010468`$term
#> [1] "regulation of gene expression"
#> 
#> $`GO:0010468`$label
#> [1] "regulation of gene expression"
#> 
#> $`GO:0010468`$obsolete
#> [1] FALSE
#> 
#> $`GO:0010468`$goId
#> [1] "GO:0010468"
#> 
#> $`GO:0010468`$comment
#> [1] "This class covers any process that regulates the rate of production of a mature gene product, and so includes processes that regulate that rate by regulating the level, stability or availability of intermediates in the process of gene expression.  For example, it covers any process that regulates the level, stability or availability of mRNA or circRNA for translation and thereby regulates the rate of production of the encoded protein via translation."
#> 
#> $`GO:0010468`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0010468"
#> 
#> $`GO:0010468`$localName
#> [1] "GO_0010468"
#> 
#> 
#> $`GO:0048523`
#> $`GO:0048523`$term
#> [1] "negative regulation of cellular process"
#> 
#> $`GO:0048523`$label
#> [1] "negative regulation of cellular process"
#> 
#> $`GO:0048523`$obsolete
#> [1] FALSE
#> 
#> $`GO:0048523`$goId
#> [1] "GO:0048523"
#> 
#> $`GO:0048523`$comment
#> [1] ""
#> 
#> $`GO:0048523`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0048523"
#> 
#> $`GO:0048523`$localName
#> [1] "GO_0048523"
#> 
#> 
#> $`GO:0048522`
#> $`GO:0048522`$term
#> [1] "positive regulation of cellular process"
#> 
#> $`GO:0048522`$label
#> [1] "positive regulation of cellular process"
#> 
#> $`GO:0048522`$obsolete
#> [1] FALSE
#> 
#> $`GO:0048522`$goId
#> [1] "GO:0048522"
#> 
#> $`GO:0048522`$comment
#> [1] ""
#> 
#> $`GO:0048522`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0048522"
#> 
#> $`GO:0048522`$localName
#> [1] "GO_0048522"
#> 
#> 
#> $`GO:0080134`
#> $`GO:0080134`$term
#> [1] "regulation of response to stress"
#> 
#> $`GO:0080134`$label
#> [1] "regulation of response to stress"
#> 
#> $`GO:0080134`$obsolete
#> [1] FALSE
#> 
#> $`GO:0080134`$goId
#> [1] "GO:0080134"
#> 
#> $`GO:0080134`$comment
#> [1] "Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC."
#> 
#> $`GO:0080134`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0080134"
#> 
#> $`GO:0080134`$localName
#> [1] "GO_0080134"
#> 
#> 
#> $`GO:0008152`
#> $`GO:0008152`$term
#> [1] "metabolic process"
#> 
#> $`GO:0008152`$label
#> [1] "metabolic process"
#> 
#> $`GO:0008152`$obsolete
#> [1] FALSE
#> 
#> $`GO:0008152`$goId
#> [1] "GO:0008152"
#> 
#> $`GO:0008152`$comment
#> [1] "Note that metabolic processes do not include single functions or processes such as protein-protein interactions, protein-nucleic acids, nor receptor-ligand interactions."
#> 
#> $`GO:0008152`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0008152"
#> 
#> $`GO:0008152`$localName
#> [1] "GO_0008152"
#> 
#> 
#> $`GO:0043516`
#> $`GO:0043516`$term
#> [1] "regulation of DNA damage response, signal transduction by p53 class mediator"
#> 
#> $`GO:0043516`$label
#> [1] "regulation of DNA damage response, signal transduction by p53 class mediator"
#> 
#> $`GO:0043516`$obsolete
#> [1] FALSE
#> 
#> $`GO:0043516`$goId
#> [1] "GO:0043516"
#> 
#> $`GO:0043516`$comment
#> [1] ""
#> 
#> $`GO:0043516`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0043516"
#> 
#> $`GO:0043516`$localName
#> [1] "GO_0043516"
#> 
#> 
#> $`GO:0043518`
#> $`GO:0043518`$term
#> [1] "negative regulation of DNA damage response, signal transduction by p53 class mediator"
#> 
#> $`GO:0043518`$label
#> [1] "negative regulation of DNA damage response, signal transduction by p53 class mediator"
#> 
#> $`GO:0043518`$obsolete
#> [1] FALSE
#> 
#> $`GO:0043518`$goId
#> [1] "GO:0043518"
#> 
#> $`GO:0043518`$comment
#> [1] ""
#> 
#> $`GO:0043518`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0043518"
#> 
#> $`GO:0043518`$localName
#> [1] "GO_0043518"
#> 
#> 
#> $`GO:0045934`
#> $`GO:0045934`$term
#> [1] "negative regulation of nucleobase-containing compound metabolic process"
#> 
#> $`GO:0045934`$label
#> [1] "negative regulation of nucleobase-containing compound metabolic process"
#> 
#> $`GO:0045934`$obsolete
#> [1] FALSE
#> 
#> $`GO:0045934`$goId
#> [1] "GO:0045934"
#> 
#> $`GO:0045934`$comment
#> [1] ""
#> 
#> $`GO:0045934`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0045934"
#> 
#> $`GO:0045934`$localName
#> [1] "GO_0045934"
#> 
#> 
#> $`GO:0045935`
#> $`GO:0045935`$term
#> [1] "positive regulation of nucleobase-containing compound metabolic process"
#> 
#> $`GO:0045935`$label
#> [1] "positive regulation of nucleobase-containing compound metabolic process"
#> 
#> $`GO:0045935`$obsolete
#> [1] FALSE
#> 
#> $`GO:0045935`$goId
#> [1] "GO:0045935"
#> 
#> $`GO:0045935`$comment
#> [1] ""
#> 
#> $`GO:0045935`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0045935"
#> 
#> $`GO:0045935`$localName
#> [1] "GO_0045935"
#> 
#> 
#> $`GO:0051493`
#> $`GO:0051493`$term
#> [1] "regulation of cytoskeleton organization"
#> 
#> $`GO:0051493`$label
#> [1] "regulation of cytoskeleton organization"
#> 
#> $`GO:0051493`$obsolete
#> [1] FALSE
#> 
#> $`GO:0051493`$goId
#> [1] "GO:0051493"
#> 
#> $`GO:0051493`$comment
#> [1] ""
#> 
#> $`GO:0051493`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0051493"
#> 
#> $`GO:0051493`$localName
#> [1] "GO_0051493"
#> 
#> 
#> $`GO:0051254`
#> $`GO:0051254`$term
#> [1] "positive regulation of RNA metabolic process"
#> 
#> $`GO:0051254`$label
#> [1] "positive regulation of RNA metabolic process"
#> 
#> $`GO:0051254`$obsolete
#> [1] FALSE
#> 
#> $`GO:0051254`$goId
#> [1] "GO:0051254"
#> 
#> $`GO:0051254`$comment
#> [1] ""
#> 
#> $`GO:0051254`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0051254"
#> 
#> $`GO:0051254`$localName
#> [1] "GO_0051254"
#> 
#> 
#> $`GO:0051252`
#> $`GO:0051252`$term
#> [1] "regulation of RNA metabolic process"
#> 
#> $`GO:0051252`$label
#> [1] "regulation of RNA metabolic process"
#> 
#> $`GO:0051252`$obsolete
#> [1] FALSE
#> 
#> $`GO:0051252`$goId
#> [1] "GO:0051252"
#> 
#> $`GO:0051252`$comment
#> [1] ""
#> 
#> $`GO:0051252`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0051252"
#> 
#> $`GO:0051252`$localName
#> [1] "GO_0051252"
#> 
#> 
#> $`GO:0051494`
#> $`GO:0051494`$term
#> [1] "negative regulation of cytoskeleton organization"
#> 
#> $`GO:0051494`$label
#> [1] "negative regulation of cytoskeleton organization"
#> 
#> $`GO:0051494`$obsolete
#> [1] FALSE
#> 
#> $`GO:0051494`$goId
#> [1] "GO:0051494"
#> 
#> $`GO:0051494`$comment
#> [1] ""
#> 
#> $`GO:0051494`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0051494"
#> 
#> $`GO:0051494`$localName
#> [1] "GO_0051494"
#> 
#> 
#> $`GO:0051253`
#> $`GO:0051253`$term
#> [1] "negative regulation of RNA metabolic process"
#> 
#> $`GO:0051253`$label
#> [1] "negative regulation of RNA metabolic process"
#> 
#> $`GO:0051253`$obsolete
#> [1] FALSE
#> 
#> $`GO:0051253`$goId
#> [1] "GO:0051253"
#> 
#> $`GO:0051253`$comment
#> [1] ""
#> 
#> $`GO:0051253`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0051253"
#> 
#> $`GO:0051253`$localName
#> [1] "GO_0051253"
#> 
#> 
#> $`GO:0007623`
#> $`GO:0007623`$term
#> [1] "circadian rhythm"
#> 
#> $`GO:0007623`$label
#> [1] "circadian rhythm"
#> 
#> $`GO:0007623`$obsolete
#> [1] FALSE
#> 
#> $`GO:0007623`$goId
#> [1] "GO:0007623"
#> 
#> $`GO:0007623`$comment
#> [1] ""
#> 
#> $`GO:0007623`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0007623"
#> 
#> $`GO:0007623`$localName
#> [1] "GO_0007623"
#> 
#> 
#> $`GO:0035639`
#> $`GO:0035639`$term
#> [1] "purine ribonucleoside triphosphate binding"
#> 
#> $`GO:0035639`$label
#> [1] "purine ribonucleoside triphosphate binding"
#> 
#> $`GO:0035639`$obsolete
#> [1] FALSE
#> 
#> $`GO:0035639`$goId
#> [1] "GO:0035639"
#> 
#> $`GO:0035639`$comment
#> [1] ""
#> 
#> $`GO:0035639`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0035639"
#> 
#> $`GO:0035639`$localName
#> [1] "GO_0035639"
#> 
#> 
#> $`GO:0036289`
#> $`GO:0036289`$term
#> [1] "peptidyl-serine autophosphorylation"
#> 
#> $`GO:0036289`$label
#> [1] "peptidyl-serine autophosphorylation"
#> 
#> $`GO:0036289`$obsolete
#> [1] FALSE
#> 
#> $`GO:0036289`$goId
#> [1] "GO:0036289"
#> 
#> $`GO:0036289`$comment
#> [1] ""
#> 
#> $`GO:0036289`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0036289"
#> 
#> $`GO:0036289`$localName
#> [1] "GO_0036289"
#> 
#> 
#> $`GO:0031399`
#> $`GO:0031399`$term
#> [1] "regulation of protein modification process"
#> 
#> $`GO:0031399`$label
#> [1] "regulation of protein modification process"
#> 
#> $`GO:0031399`$obsolete
#> [1] FALSE
#> 
#> $`GO:0031399`$goId
#> [1] "GO:0031399"
#> 
#> $`GO:0031399`$comment
#> [1] ""
#> 
#> $`GO:0031399`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0031399"
#> 
#> $`GO:0031399`$localName
#> [1] "GO_0031399"
#> 
#> 
#> $`GO:0003824`
#> $`GO:0003824`$term
#> [1] "catalytic activity"
#> 
#> $`GO:0003824`$label
#> [1] "catalytic activity"
#> 
#> $`GO:0003824`$obsolete
#> [1] FALSE
#> 
#> $`GO:0003824`$goId
#> [1] "GO:0003824"
#> 
#> $`GO:0003824`$comment
#> [1] ""
#> 
#> $`GO:0003824`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0003824"
#> 
#> $`GO:0003824`$localName
#> [1] "GO_0003824"
#> 
#> 
#> $`GO:0005654`
#> $`GO:0005654`$term
#> [1] "nucleoplasm"
#> 
#> $`GO:0005654`$label
#> [1] "nucleoplasm"
#> 
#> $`GO:0005654`$obsolete
#> [1] FALSE
#> 
#> $`GO:0005654`$goId
#> [1] "GO:0005654"
#> 
#> $`GO:0005654`$comment
#> [1] ""
#> 
#> $`GO:0005654`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0005654"
#> 
#> $`GO:0005654`$localName
#> [1] "GO_0005654"
#> 
#> 
#> $`GO:0007399`
#> $`GO:0007399`$term
#> [1] "nervous system development"
#> 
#> $`GO:0007399`$label
#> [1] "nervous system development"
#> 
#> $`GO:0007399`$obsolete
#> [1] FALSE
#> 
#> $`GO:0007399`$goId
#> [1] "GO:0007399"
#> 
#> $`GO:0007399`$comment
#> [1] ""
#> 
#> $`GO:0007399`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0007399"
#> 
#> $`GO:0007399`$localName
#> [1] "GO_0007399"
#> 
#> 
#> $`GO:0043412`
#> $`GO:0043412`$term
#> [1] "macromolecule modification"
#> 
#> $`GO:0043412`$label
#> [1] "macromolecule modification"
#> 
#> $`GO:0043412`$obsolete
#> [1] FALSE
#> 
#> $`GO:0043412`$goId
#> [1] "GO:0043412"
#> 
#> $`GO:0043412`$comment
#> [1] ""
#> 
#> $`GO:0043412`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0043412"
#> 
#> $`GO:0043412`$localName
#> [1] "GO_0043412"
#> 
#> 
#> $`GO:0007275`
#> $`GO:0007275`$term
#> [1] "multicellular organism development"
#> 
#> $`GO:0007275`$label
#> [1] "multicellular organism development"
#> 
#> $`GO:0007275`$obsolete
#> [1] FALSE
#> 
#> $`GO:0007275`$goId
#> [1] "GO:0007275"
#> 
#> $`GO:0007275`$comment
#> [1] "Note that this term was 'developmental process'."
#> 
#> $`GO:0007275`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0007275"
#> 
#> $`GO:0007275`$localName
#> [1] "GO_0007275"
#> 
#> 
#> $`GO:0016301`
#> $`GO:0016301`$term
#> [1] "kinase activity"
#> 
#> $`GO:0016301`$label
#> [1] "kinase activity"
#> 
#> $`GO:0016301`$obsolete
#> [1] FALSE
#> 
#> $`GO:0016301`$goId
#> [1] "GO:0016301"
#> 
#> $`GO:0016301`$comment
#> [1] "Note that this term encompasses all activities that transfer a single phosphate group; although ATP is by far the most common phosphate donor, reactions using other phosphate donors are included in this term."
#> 
#> $`GO:0016301`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0016301"
#> 
#> $`GO:0016301`$localName
#> [1] "GO_0016301"
#> 
#> 
#> $`GO:0097159`
#> $`GO:0097159`$term
#> [1] "organic cyclic compound binding"
#> 
#> $`GO:0097159`$label
#> [1] "organic cyclic compound binding"
#> 
#> $`GO:0097159`$obsolete
#> [1] FALSE
#> 
#> $`GO:0097159`$goId
#> [1] "GO:0097159"
#> 
#> $`GO:0097159`$comment
#> [1] ""
#> 
#> $`GO:0097159`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0097159"
#> 
#> $`GO:0097159`$localName
#> [1] "GO_0097159"
#> 
#> 
#> $`GO:0017076`
#> $`GO:0017076`$term
#> [1] "purine nucleotide binding"
#> 
#> $`GO:0017076`$label
#> [1] "purine nucleotide binding"
#> 
#> $`GO:0017076`$obsolete
#> [1] FALSE
#> 
#> $`GO:0017076`$goId
#> [1] "GO:0017076"
#> 
#> $`GO:0017076`$comment
#> [1] ""
#> 
#> $`GO:0017076`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0017076"
#> 
#> $`GO:0017076`$localName
#> [1] "GO_0017076"
#> 
#> 
#> $`GO:0006518`
#> $`GO:0006518`$term
#> [1] "peptide metabolic process"
#> 
#> $`GO:0006518`$label
#> [1] "peptide metabolic process"
#> 
#> $`GO:0006518`$obsolete
#> [1] FALSE
#> 
#> $`GO:0006518`$goId
#> [1] "GO:0006518"
#> 
#> $`GO:0006518`$comment
#> [1] ""
#> 
#> $`GO:0006518`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0006518"
#> 
#> $`GO:0006518`$localName
#> [1] "GO_0006518"
#> 
#> 
#> $`GO:0034641`
#> $`GO:0034641`$term
#> [1] "cellular nitrogen compound metabolic process"
#> 
#> $`GO:0034641`$label
#> [1] "cellular nitrogen compound metabolic process"
#> 
#> $`GO:0034641`$obsolete
#> [1] FALSE
#> 
#> $`GO:0034641`$goId
#> [1] "GO:0034641"
#> 
#> $`GO:0034641`$comment
#> [1] ""
#> 
#> $`GO:0034641`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0034641"
#> 
#> $`GO:0034641`$localName
#> [1] "GO_0034641"
#> 
#> 
#> $`GO:0016310`
#> $`GO:0016310`$term
#> [1] "phosphorylation"
#> 
#> $`GO:0016310`$label
#> [1] "phosphorylation"
#> 
#> $`GO:0016310`$obsolete
#> [1] FALSE
#> 
#> $`GO:0016310`$goId
#> [1] "GO:0016310"
#> 
#> $`GO:0016310`$comment
#> [1] ""
#> 
#> $`GO:0016310`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0016310"
#> 
#> $`GO:0016310`$localName
#> [1] "GO_0016310"
#> 
#> 
#> $`GO:0005515`
#> $`GO:0005515`$term
#> [1] "protein binding"
#> 
#> $`GO:0005515`$label
#> [1] "protein binding"
#> 
#> $`GO:0005515`$obsolete
#> [1] FALSE
#> 
#> $`GO:0005515`$goId
#> [1] "GO:0005515"
#> 
#> $`GO:0005515`$comment
#> [1] ""
#> 
#> $`GO:0005515`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0005515"
#> 
#> $`GO:0005515`$localName
#> [1] "GO_0005515"
#> 
#> 
#> $`GO:0005634`
#> $`GO:0005634`$term
#> [1] "nucleus"
#> 
#> $`GO:0005634`$label
#> [1] "nucleus"
#> 
#> $`GO:0005634`$obsolete
#> [1] FALSE
#> 
#> $`GO:0005634`$goId
#> [1] "GO:0005634"
#> 
#> $`GO:0005634`$comment
#> [1] ""
#> 
#> $`GO:0005634`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0005634"
#> 
#> $`GO:0005634`$localName
#> [1] "GO_0005634"
#> 
#> 
#> $`GO:0044087`
#> $`GO:0044087`$term
#> [1] "regulation of cellular component biogenesis"
#> 
#> $`GO:0044087`$label
#> [1] "regulation of cellular component biogenesis"
#> 
#> $`GO:0044087`$obsolete
#> [1] FALSE
#> 
#> $`GO:0044087`$goId
#> [1] "GO:0044087"
#> 
#> $`GO:0044087`$comment
#> [1] ""
#> 
#> $`GO:0044087`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0044087"
#> 
#> $`GO:0044087`$localName
#> [1] "GO_0044087"
#> 
#> 
#> $`GO:0044403`
#> $`GO:0044403`$term
#> [1] "symbiotic process"
#> 
#> $`GO:0044403`$label
#> [1] "symbiotic process"
#> 
#> $`GO:0044403`$obsolete
#> [1] FALSE
#> 
#> $`GO:0044403`$goId
#> [1] "GO:0044403"
#> 
#> $`GO:0044403`$comment
#> [1] ""
#> 
#> $`GO:0044403`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0044403"
#> 
#> $`GO:0044403`$localName
#> [1] "GO_0044403"
#> 
#> 
#> $`GO:0051173`
#> $`GO:0051173`$term
#> [1] "positive regulation of nitrogen compound metabolic process"
#> 
#> $`GO:0051173`$label
#> [1] "positive regulation of nitrogen compound metabolic process"
#> 
#> $`GO:0051173`$obsolete
#> [1] FALSE
#> 
#> $`GO:0051173`$goId
#> [1] "GO:0051173"
#> 
#> $`GO:0051173`$comment
#> [1] ""
#> 
#> $`GO:0051173`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0051173"
#> 
#> $`GO:0051173`$localName
#> [1] "GO_0051173"
#> 
#> 
#> $`GO:0051171`
#> $`GO:0051171`$term
#> [1] "regulation of nitrogen compound metabolic process"
#> 
#> $`GO:0051171`$label
#> [1] "regulation of nitrogen compound metabolic process"
#> 
#> $`GO:0051171`$obsolete
#> [1] FALSE
#> 
#> $`GO:0051171`$goId
#> [1] "GO:0051171"
#> 
#> $`GO:0051171`$comment
#> [1] ""
#> 
#> $`GO:0051171`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0051171"
#> 
#> $`GO:0051171`$localName
#> [1] "GO_0051171"
#> 
#> 
#> $`GO:0051172`
#> $`GO:0051172`$term
#> [1] "negative regulation of nitrogen compound metabolic process"
#> 
#> $`GO:0051172`$label
#> [1] "negative regulation of nitrogen compound metabolic process"
#> 
#> $`GO:0051172`$obsolete
#> [1] FALSE
#> 
#> $`GO:0051172`$goId
#> [1] "GO:0051172"
#> 
#> $`GO:0051172`$comment
#> [1] ""
#> 
#> $`GO:0051172`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0051172"
#> 
#> $`GO:0051172`$localName
#> [1] "GO_0051172"
#> 
#> 
#> $`GO:0070013`
#> $`GO:0070013`$term
#> [1] "intracellular organelle lumen"
#> 
#> $`GO:0070013`$label
#> [1] "intracellular organelle lumen"
#> 
#> $`GO:0070013`$obsolete
#> [1] FALSE
#> 
#> $`GO:0070013`$goId
#> [1] "GO:0070013"
#> 
#> $`GO:0070013`$comment
#> [1] ""
#> 
#> $`GO:0070013`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0070013"
#> 
#> $`GO:0070013`$localName
#> [1] "GO_0070013"
#> 
#> 
#> $`GO:0023057`
#> $`GO:0023057`$term
#> [1] "negative regulation of signaling"
#> 
#> $`GO:0023057`$label
#> [1] "negative regulation of signaling"
#> 
#> $`GO:0023057`$obsolete
#> [1] FALSE
#> 
#> $`GO:0023057`$goId
#> [1] "GO:0023057"
#> 
#> $`GO:0023057`$comment
#> [1] ""
#> 
#> $`GO:0023057`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0023057"
#> 
#> $`GO:0023057`$localName
#> [1] "GO_0023057"
#> 
#> 
#> $`GO:0004674`
#> $`GO:0004674`$term
#> [1] "protein serine/threonine kinase activity"
#> 
#> $`GO:0004674`$label
#> [1] "protein serine/threonine kinase activity"
#> 
#> $`GO:0004674`$obsolete
#> [1] FALSE
#> 
#> $`GO:0004674`$goId
#> [1] "GO:0004674"
#> 
#> $`GO:0004674`$comment
#> [1] ""
#> 
#> $`GO:0004674`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0004674"
#> 
#> $`GO:0004674`$localName
#> [1] "GO_0004674"
#> 
#> 
#> $`GO:0005524`
#> $`GO:0005524`$term
#> [1] "ATP binding"
#> 
#> $`GO:0005524`$label
#> [1] "ATP binding"
#> 
#> $`GO:0005524`$obsolete
#> [1] FALSE
#> 
#> $`GO:0005524`$goId
#> [1] "GO:0005524"
#> 
#> $`GO:0005524`$comment
#> [1] ""
#> 
#> $`GO:0005524`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0005524"
#> 
#> $`GO:0005524`$localName
#> [1] "GO_0005524"
#> 
#> 
#> $`GO:0031115`
#> $`GO:0031115`$term
#> [1] "negative regulation of microtubule polymerization"
#> 
#> $`GO:0031115`$label
#> [1] "negative regulation of microtubule polymerization"
#> 
#> $`GO:0031115`$obsolete
#> [1] FALSE
#> 
#> $`GO:0031115`$goId
#> [1] "GO:0031115"
#> 
#> $`GO:0031115`$comment
#> [1] ""
#> 
#> $`GO:0031115`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0031115"
#> 
#> $`GO:0031115`$localName
#> [1] "GO_0031115"
#> 
#> 
#> $`GO:0010556`
#> $`GO:0010556`$term
#> [1] "regulation of macromolecule biosynthetic process"
#> 
#> $`GO:0010556`$label
#> [1] "regulation of macromolecule biosynthetic process"
#> 
#> $`GO:0010556`$obsolete
#> [1] FALSE
#> 
#> $`GO:0010556`$goId
#> [1] "GO:0010556"
#> 
#> $`GO:0010556`$comment
#> [1] ""
#> 
#> $`GO:0010556`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0010556"
#> 
#> $`GO:0010556`$localName
#> [1] "GO_0010556"
#> 
#> 
#> $`GO:1901796`
#> $`GO:1901796`$term
#> [1] "regulation of signal transduction by p53 class mediator"
#> 
#> $`GO:1901796`$label
#> [1] "regulation of signal transduction by p53 class mediator"
#> 
#> $`GO:1901796`$obsolete
#> [1] FALSE
#> 
#> $`GO:1901796`$goId
#> [1] "GO:1901796"
#> 
#> $`GO:1901796`$comment
#> [1] ""
#> 
#> $`GO:1901796`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_1901796"
#> 
#> $`GO:1901796`$localName
#> [1] "GO_1901796"
#> 
#> 
#> $`GO:0004672`
#> $`GO:0004672`$term
#> [1] "protein kinase activity"
#> 
#> $`GO:0004672`$label
#> [1] "protein kinase activity"
#> 
#> $`GO:0004672`$obsolete
#> [1] FALSE
#> 
#> $`GO:0004672`$goId
#> [1] "GO:0004672"
#> 
#> $`GO:0004672`$comment
#> [1] "Note that triphosphate is used as a phosphate donor by at least one kinase."
#> 
#> $`GO:0004672`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0004672"
#> 
#> $`GO:0004672`$localName
#> [1] "GO_0004672"
#> 
#> 
#> $`GO:0010557`
#> $`GO:0010557`$term
#> [1] "positive regulation of macromolecule biosynthetic process"
#> 
#> $`GO:0010557`$label
#> [1] "positive regulation of macromolecule biosynthetic process"
#> 
#> $`GO:0010557`$obsolete
#> [1] FALSE
#> 
#> $`GO:0010557`$goId
#> [1] "GO:0010557"
#> 
#> $`GO:0010557`$comment
#> [1] ""
#> 
#> $`GO:0010557`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0010557"
#> 
#> $`GO:0010557`$localName
#> [1] "GO_0010557"
#> 
#> 
#> $`GO:1901797`
#> $`GO:1901797`$term
#> [1] "negative regulation of signal transduction by p53 class mediator"
#> 
#> $`GO:1901797`$label
#> [1] "negative regulation of signal transduction by p53 class mediator"
#> 
#> $`GO:1901797`$obsolete
#> [1] FALSE
#> 
#> $`GO:1901797`$goId
#> [1] "GO:1901797"
#> 
#> $`GO:1901797`$comment
#> [1] ""
#> 
#> $`GO:1901797`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_1901797"
#> 
#> $`GO:1901797`$localName
#> [1] "GO_1901797"
#> 
#> 
#> $`GO:0023051`
#> $`GO:0023051`$term
#> [1] "regulation of signaling"
#> 
#> $`GO:0023051`$label
#> [1] "regulation of signaling"
#> 
#> $`GO:0023051`$obsolete
#> [1] FALSE
#> 
#> $`GO:0023051`$goId
#> [1] "GO:0023051"
#> 
#> $`GO:0023051`$comment
#> [1] ""
#> 
#> $`GO:0023051`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0023051"
#> 
#> $`GO:0023051`$localName
#> [1] "GO_0023051"
#> 
#> 
#> $`GO:2001141`
#> $`GO:2001141`$term
#> [1] "regulation of RNA biosynthetic process"
#> 
#> $`GO:2001141`$label
#> [1] "regulation of RNA biosynthetic process"
#> 
#> $`GO:2001141`$obsolete
#> [1] FALSE
#> 
#> $`GO:2001141`$goId
#> [1] "GO:2001141"
#> 
#> $`GO:2001141`$comment
#> [1] ""
#> 
#> $`GO:2001141`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_2001141"
#> 
#> $`GO:2001141`$localName
#> [1] "GO_2001141"
#> 
#> 
#> $`GO:2001020`
#> $`GO:2001020`$term
#> [1] "regulation of response to DNA damage stimulus"
#> 
#> $`GO:2001020`$label
#> [1] "regulation of response to DNA damage stimulus"
#> 
#> $`GO:2001020`$obsolete
#> [1] FALSE
#> 
#> $`GO:2001020`$goId
#> [1] "GO:2001020"
#> 
#> $`GO:2001020`$comment
#> [1] ""
#> 
#> $`GO:2001020`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_2001020"
#> 
#> $`GO:2001020`$localName
#> [1] "GO_2001020"
#> 
#> 
#> $`GO:2001021`
#> $`GO:2001021`$term
#> [1] "negative regulation of response to DNA damage stimulus"
#> 
#> $`GO:2001021`$label
#> [1] "negative regulation of response to DNA damage stimulus"
#> 
#> $`GO:2001021`$obsolete
#> [1] FALSE
#> 
#> $`GO:2001021`$goId
#> [1] "GO:2001021"
#> 
#> $`GO:2001021`$comment
#> [1] ""
#> 
#> $`GO:2001021`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_2001021"
#> 
#> $`GO:2001021`$localName
#> [1] "GO_2001021"
#> 
#> 
#> $`GO:0044419`
#> $`GO:0044419`$term
#> [1] "interspecies interaction between organisms"
#> 
#> $`GO:0044419`$label
#> [1] "interspecies interaction between organisms"
#> 
#> $`GO:0044419`$obsolete
#> [1] FALSE
#> 
#> $`GO:0044419`$goId
#> [1] "GO:0044419"
#> 
#> $`GO:0044419`$comment
#> [1] ""
#> 
#> $`GO:0044419`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0044419"
#> 
#> $`GO:0044419`$localName
#> [1] "GO_0044419"
#> 
#> 
#> $`GO:0031113`
#> $`GO:0031113`$term
#> [1] "regulation of microtubule polymerization"
#> 
#> $`GO:0031113`$label
#> [1] "regulation of microtubule polymerization"
#> 
#> $`GO:0031113`$obsolete
#> [1] FALSE
#> 
#> $`GO:0031113`$goId
#> [1] "GO:0031113"
#> 
#> $`GO:0031113`$comment
#> [1] ""
#> 
#> $`GO:0031113`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0031113"
#> 
#> $`GO:0031113`$localName
#> [1] "GO_0031113"
#> 
#> 
#> $`GO:0016772`
#> $`GO:0016772`$term
#> [1] "transferase activity, transferring phosphorus-containing groups"
#> 
#> $`GO:0016772`$label
#> [1] "transferase activity, transferring phosphorus-containing groups"
#> 
#> $`GO:0016772`$obsolete
#> [1] FALSE
#> 
#> $`GO:0016772`$goId
#> [1] "GO:0016772"
#> 
#> $`GO:0016772`$comment
#> [1] "Note that this term encompasses all kinase activities, as well as activities that transfer other phosphorus-containing groups such as diphosphate or nucleotides."
#> 
#> $`GO:0016772`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0016772"
#> 
#> $`GO:0016772`$localName
#> [1] "GO_0016772"
#> 
#> 
#> $`GO:0031111`
#> $`GO:0031111`$term
#> [1] "negative regulation of microtubule polymerization or depolymerization"
#> 
#> $`GO:0031111`$label
#> [1] "negative regulation of microtubule polymerization or depolymerization"
#> 
#> $`GO:0031111`$obsolete
#> [1] FALSE
#> 
#> $`GO:0031111`$goId
#> [1] "GO:0031111"
#> 
#> $`GO:0031111`$comment
#> [1] ""
#> 
#> $`GO:0031111`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0031111"
#> 
#> $`GO:0031111`$localName
#> [1] "GO_0031111"
#> 
#> 
#> $`GO:1990904`
#> $`GO:1990904`$term
#> [1] "ribonucleoprotein complex"
#> 
#> $`GO:1990904`$label
#> [1] "ribonucleoprotein complex"
#> 
#> $`GO:1990904`$obsolete
#> [1] FALSE
#> 
#> $`GO:1990904`$goId
#> [1] "GO:1990904"
#> 
#> $`GO:1990904`$comment
#> [1] ""
#> 
#> $`GO:1990904`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_1990904"
#> 
#> $`GO:1990904`$localName
#> [1] "GO_1990904"
#> 
#> 
#> $`GO:0016773`
#> $`GO:0016773`$term
#> [1] "phosphotransferase activity, alcohol group as acceptor"
#> 
#> $`GO:0016773`$label
#> [1] "phosphotransferase activity, alcohol group as acceptor"
#> 
#> $`GO:0016773`$obsolete
#> [1] FALSE
#> 
#> $`GO:0016773`$goId
#> [1] "GO:0016773"
#> 
#> $`GO:0016773`$comment
#> [1] ""
#> 
#> $`GO:0016773`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0016773"
#> 
#> $`GO:0016773`$localName
#> [1] "GO_0016773"
#> 
#> 
#> $`GO:0031110`
#> $`GO:0031110`$term
#> [1] "regulation of microtubule polymerization or depolymerization"
#> 
#> $`GO:0031110`$label
#> [1] "regulation of microtubule polymerization or depolymerization"
#> 
#> $`GO:0031110`$obsolete
#> [1] FALSE
#> 
#> $`GO:0031110`$goId
#> [1] "GO:0031110"
#> 
#> $`GO:0031110`$comment
#> [1] ""
#> 
#> $`GO:0031110`$uri
#> [1] "http://purl.obolibrary.org/obo/GO_0031110"
#> 
#> $`GO:0031110`$localName
#> [1] "GO_0031110"
#> 
#> 
geneInfo('1859','locations')
#> [[1]]
#> [[1]]$taxon
#> [[1]]$taxon$externalDatabase
#> [[1]]$taxon$externalDatabase$checked
#> [1] FALSE
#> 
#> [[1]]$taxon$externalDatabase$name
#> [1] "hg38"
#> 
#> [[1]]$taxon$externalDatabase$id
#> [1] 87
#> 
#> 
#> [[1]]$taxon$commonName
#> [1] "human"
#> 
#> [[1]]$taxon$scientificName
#> [1] "Homo sapiens"
#> 
#> [[1]]$taxon$isGenesUsable
#> [1] TRUE
#> 
#> [[1]]$taxon$ncbiId
#> [1] 9606
#> 
#> [[1]]$taxon$isSpecies
#> NULL
#> 
#> [[1]]$taxon$`_totalInQuery`
#> [1] 0
#> 
#> [[1]]$taxon$id
#> [1] 1
#> 
#> 
#> [[1]]$strand
#> [1] "+"
#> 
#> [[1]]$chromosome
#> [1] "21"
#> 
#> [[1]]$nucleotide
#> [1] 37365572
#> 
#> [[1]]$nucleotideLength
#> [1] 149803
#> 
#> [[1]]$bin
#> [1] 108
#> 
#> [[1]]$`_totalInQuery`
#> [1] 0
#> 
#> [[1]]$id
#> NULL
#> 
#> 
geneInfo('1859','probes')
#> [[1]]
#> [[1]]$arrayDesign
#> [[1]]$arrayDesign$shortName
#> [1] "GPL13635"
#> 
#> [[1]]$arrayDesign$dateCached
#> NULL
#> 
#> [[1]]$arrayDesign$numProbeSequences
#> NULL
#> 
#> [[1]]$arrayDesign$numProbeAlignments
#> NULL
#> 
#> [[1]]$arrayDesign$numProbesToGenes
#> NULL
#> 
#> [[1]]$arrayDesign$numGenes
#> NULL
#> 
#> [[1]]$arrayDesign$designElementCount
#> NULL
#> 
#> [[1]]$arrayDesign$taxon
#> [1] "human"
#> 
#> [[1]]$arrayDesign$technologyType
#> [1] "ONECOLOR"
#> 
#> [[1]]$arrayDesign$lastGeneMapping
#> NULL
#> 
#> [[1]]$arrayDesign$lastSequenceAnalysis
#> NULL
#> 
#> [[1]]$arrayDesign$lastSequenceUpdate
#> NULL
#> 
#> [[1]]$arrayDesign$blackListed
#> [1] FALSE
#> 
#> [[1]]$arrayDesign$taxonID
#> [1] 1
#> 
#> [[1]]$arrayDesign$color
#> NULL
#> 
#> [[1]]$arrayDesign$expressionExperimentCount
#> NULL
#> 
#> [[1]]$arrayDesign$hasBlatAssociations
#> NULL
#> 
#> [[1]]$arrayDesign$hasGeneAssociations
#> NULL
#> 
#> [[1]]$arrayDesign$hasSequenceAssociations
#> NULL
#> 
#> [[1]]$arrayDesign$isAffymetrixAltCdf
#> [1] FALSE
#> 
#> [[1]]$arrayDesign$isMerged
#> NULL
#> 
#> [[1]]$arrayDesign$isMergee
#> NULL
#> 
#> [[1]]$arrayDesign$isSubsumed
#> NULL
#> 
#> [[1]]$arrayDesign$isSubsumer
#> NULL
#> 
#> [[1]]$arrayDesign$lastRepeatMask
#> NULL
#> 
#> [[1]]$arrayDesign$description
#> [1] " This is a whole human genome array in 12-plex format provided by Roche Nimblegen. See manufacturer's website at http://www.nimblegen.com/."
#> 
#> [[1]]$arrayDesign$name
#> [1] "Nimblegen Homo sapiens HG18 Expression Array (12x135k)"
#> 
#> [[1]]$arrayDesign$lastUpdated
#> [1] 1.544845e+12
#> 
#> [[1]]$arrayDesign$troubled
#> [1] FALSE
#> 
#> [[1]]$arrayDesign$lastTroubledEvent
#> NULL
#> 
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#> [1] "Agilent-028004 SurePrint G3 Human GE 8x60K Microarray (Feature Number version)"
#> 
#> [[8]]$arrayDesign$lastUpdated
#> [1] 1.544845e+12
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#> [[8]]$arrayDesign$troubled
#> [1] FALSE
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#> [[8]]$arrayDesign$lastTroubledEvent
#> NULL
#> 
#> [[8]]$arrayDesign$needsAttention
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#> 
#> [[8]]$arrayDesign$troubleDetails
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#> [[8]]$arrayDesign$lastNoteUpdateEvent
#> NULL
#> 
#> [[8]]$arrayDesign$lastNeedsAttentionEvent
#> NULL
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#> [[8]]$arrayDesign$curationNote
#> NULL
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#> [1] 779
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#> 
#> [[8]]$geneMappingSummaries
#> NULL
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#> [[8]]$description
#> [1] ""
#> 
#> [[8]]$name
#> [1] "29036"
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#> [[8]]$`_totalInQuery`
#> [1] 0
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#> [[8]]$id
#> [1] 22564933
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#> 
#> [[9]]
#> [[9]]$arrayDesign
#> [[9]]$arrayDesign$shortName
#> [1] "GPL13607"
#> 
#> [[9]]$arrayDesign$dateCached
#> NULL
#> 
#> [[9]]$arrayDesign$numProbeSequences
#> NULL
#> 
#> [[9]]$arrayDesign$numProbeAlignments
#> NULL
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#> [[9]]$arrayDesign$numProbesToGenes
#> NULL
#> 
#> [[9]]$arrayDesign$numGenes
#> NULL
#> 
#> [[9]]$arrayDesign$designElementCount
#> NULL
#> 
#> [[9]]$arrayDesign$taxon
#> [1] "human"
#> 
#> [[9]]$arrayDesign$technologyType
#> [1] "ONECOLOR"
#> 
#> [[9]]$arrayDesign$lastGeneMapping
#> NULL
#> 
#> [[9]]$arrayDesign$lastSequenceAnalysis
#> NULL
#> 
#> [[9]]$arrayDesign$lastSequenceUpdate
#> NULL
#> 
#> [[9]]$arrayDesign$blackListed
#> [1] FALSE
#> 
#> [[9]]$arrayDesign$taxonID
#> [1] 1
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#> [[9]]$arrayDesign$color
#> NULL
#> 
#> [[9]]$arrayDesign$expressionExperimentCount
#> NULL
#> 
#> [[9]]$arrayDesign$hasBlatAssociations
#> NULL
#> 
#> [[9]]$arrayDesign$hasGeneAssociations
#> NULL
#> 
#> [[9]]$arrayDesign$hasSequenceAssociations
#> NULL
#> 
#> [[9]]$arrayDesign$isAffymetrixAltCdf
#> [1] FALSE
#> 
#> [[9]]$arrayDesign$isMerged
#> NULL
#> 
#> [[9]]$arrayDesign$isMergee
#> NULL
#> 
#> [[9]]$arrayDesign$isSubsumed
#> NULL
#> 
#> [[9]]$arrayDesign$isSubsumer
#> NULL
#> 
#> [[9]]$arrayDesign$lastRepeatMask
#> NULL
#> 
#> [[9]]$arrayDesign$description
#> [1] "  SurePrint G3 Human GE 8x60K Microarray  Arrays of this design have barcodes that begin with 16028004 or 2528004.  Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.  The ID column represents the Agilent Feature Extraction feature number.  Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).  To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.  *** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL14550"
#> 
#> [[9]]$arrayDesign$name
#> [1] "Agilent-028004 SurePrint G3 Human GE 8x60K Microarray (Feature Number version)"
#> 
#> [[9]]$arrayDesign$lastUpdated
#> [1] 1.544845e+12
#> 
#> [[9]]$arrayDesign$troubled
#> [1] FALSE
#> 
#> [[9]]$arrayDesign$lastTroubledEvent
#> NULL
#> 
#> [[9]]$arrayDesign$needsAttention
#> [1] FALSE
#> 
#> [[9]]$arrayDesign$troubleDetails
#> [1] "No trouble details provided."
#> 
#> [[9]]$arrayDesign$lastNoteUpdateEvent
#> NULL
#> 
#> [[9]]$arrayDesign$lastNeedsAttentionEvent
#> NULL
#> 
#> [[9]]$arrayDesign$curationNote
#> NULL
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#> [[9]]$arrayDesign$`_totalInQuery`
#> [1] 0
#> 
#> [[9]]$arrayDesign$id
#> [1] 779
#> 
#> 
#> [[9]]$geneMappingSummaries
#> NULL
#> 
#> [[9]]$description
#> [1] ""
#> 
#> [[9]]$name
#> [1] "30441"
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#> [[9]]$`_totalInQuery`
#> [1] 0
#> 
#> [[9]]$id
#> [1] 22562640
#> 
#> 
#> [[10]]
#> [[10]]$arrayDesign
#> [[10]]$arrayDesign$shortName
#> [1] "GPL15287"
#> 
#> [[10]]$arrayDesign$dateCached
#> NULL
#> 
#> [[10]]$arrayDesign$numProbeSequences
#> NULL
#> 
#> [[10]]$arrayDesign$numProbeAlignments
#> NULL
#> 
#> [[10]]$arrayDesign$numProbesToGenes
#> NULL
#> 
#> [[10]]$arrayDesign$numGenes
#> NULL
#> 
#> [[10]]$arrayDesign$designElementCount
#> NULL
#> 
#> [[10]]$arrayDesign$taxon
#> [1] "human"
#> 
#> [[10]]$arrayDesign$technologyType
#> [1] "ONECOLOR"
#> 
#> [[10]]$arrayDesign$lastGeneMapping
#> NULL
#> 
#> [[10]]$arrayDesign$lastSequenceAnalysis
#> NULL
#> 
#> [[10]]$arrayDesign$lastSequenceUpdate
#> NULL
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#> [[10]]$arrayDesign$blackListed
#> [1] FALSE
#> 
#> [[10]]$arrayDesign$taxonID
#> [1] 1
#> 
#> [[10]]$arrayDesign$color
#> NULL
#> 
#> [[10]]$arrayDesign$expressionExperimentCount
#> NULL
#> 
#> [[10]]$arrayDesign$hasBlatAssociations
#> NULL
#> 
#> [[10]]$arrayDesign$hasGeneAssociations
#> NULL
#> 
#> [[10]]$arrayDesign$hasSequenceAssociations
#> NULL
#> 
#> [[10]]$arrayDesign$isAffymetrixAltCdf
#> [1] FALSE
#> 
#> [[10]]$arrayDesign$isMerged
#> NULL
#> 
#> [[10]]$arrayDesign$isMergee
#> NULL
#> 
#> [[10]]$arrayDesign$isSubsumed
#> NULL
#> 
#> [[10]]$arrayDesign$isSubsumer
#> NULL
#> 
#> [[10]]$arrayDesign$lastRepeatMask
#> NULL
#> 
#> [[10]]$arrayDesign$description
#> [1] " Human whole genome array from Agilent catalogue Arrays of this design have barcodes that begin with 16020087 or 2520087 Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions."
#> 
#> [[10]]$arrayDesign$name
#> [1] "Agilent-020087 human whole genome 4x44K (Feature Number version)"
#> 
#> [[10]]$arrayDesign$lastUpdated
#> [1] 1.544845e+12
#> 
#> [[10]]$arrayDesign$troubled
#> [1] FALSE
#> 
#> [[10]]$arrayDesign$lastTroubledEvent
#> NULL
#> 
#> [[10]]$arrayDesign$needsAttention
#> [1] FALSE
#> 
#> [[10]]$arrayDesign$troubleDetails
#> [1] "No trouble details provided."
#> 
#> [[10]]$arrayDesign$lastNoteUpdateEvent
#> NULL
#> 
#> [[10]]$arrayDesign$lastNeedsAttentionEvent
#> NULL
#> 
#> [[10]]$arrayDesign$curationNote
#> NULL
#> 
#> [[10]]$arrayDesign$`_totalInQuery`
#> [1] 0
#> 
#> [[10]]$arrayDesign$id
#> [1] 781
#> 
#> 
#> [[10]]$geneMappingSummaries
#> NULL
#> 
#> [[10]]$description
#> [1] " DYRK1A"
#> 
#> [[10]]$name
#> [1] "3747"
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#> [[10]]$`_totalInQuery`
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#> 
#> [[10]]$id
#> [1] 22672678
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#> 
#> [[11]]
#> [[11]]$arrayDesign
#> [[11]]$arrayDesign$shortName
#> [1] "GPL15287"
#> 
#> [[11]]$arrayDesign$dateCached
#> NULL
#> 
#> [[11]]$arrayDesign$numProbeSequences
#> NULL
#> 
#> [[11]]$arrayDesign$numProbeAlignments
#> NULL
#> 
#> [[11]]$arrayDesign$numProbesToGenes
#> NULL
#> 
#> [[11]]$arrayDesign$numGenes
#> NULL
#> 
#> [[11]]$arrayDesign$designElementCount
#> NULL
#> 
#> [[11]]$arrayDesign$taxon
#> [1] "human"
#> 
#> [[11]]$arrayDesign$technologyType
#> [1] "ONECOLOR"
#> 
#> [[11]]$arrayDesign$lastGeneMapping
#> NULL
#> 
#> [[11]]$arrayDesign$lastSequenceAnalysis
#> NULL
#> 
#> [[11]]$arrayDesign$lastSequenceUpdate
#> NULL
#> 
#> [[11]]$arrayDesign$blackListed
#> [1] FALSE
#> 
#> [[11]]$arrayDesign$taxonID
#> [1] 1
#> 
#> [[11]]$arrayDesign$color
#> NULL
#> 
#> [[11]]$arrayDesign$expressionExperimentCount
#> NULL
#> 
#> [[11]]$arrayDesign$hasBlatAssociations
#> NULL
#> 
#> [[11]]$arrayDesign$hasGeneAssociations
#> NULL
#> 
#> [[11]]$arrayDesign$hasSequenceAssociations
#> NULL
#> 
#> [[11]]$arrayDesign$isAffymetrixAltCdf
#> [1] FALSE
#> 
#> [[11]]$arrayDesign$isMerged
#> NULL
#> 
#> [[11]]$arrayDesign$isMergee
#> NULL
#> 
#> [[11]]$arrayDesign$isSubsumed
#> NULL
#> 
#> [[11]]$arrayDesign$isSubsumer
#> NULL
#> 
#> [[11]]$arrayDesign$lastRepeatMask
#> NULL
#> 
#> [[11]]$arrayDesign$description
#> [1] " Human whole genome array from Agilent catalogue Arrays of this design have barcodes that begin with 16020087 or 2520087 Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions."
#> 
#> [[11]]$arrayDesign$name
#> [1] "Agilent-020087 human whole genome 4x44K (Feature Number version)"
#> 
#> [[11]]$arrayDesign$lastUpdated
#> [1] 1.544845e+12
#> 
#> [[11]]$arrayDesign$troubled
#> [1] FALSE
#> 
#> [[11]]$arrayDesign$lastTroubledEvent
#> NULL
#> 
#> [[11]]$arrayDesign$needsAttention
#> [1] FALSE
#> 
#> [[11]]$arrayDesign$troubleDetails
#> [1] "No trouble details provided."
#> 
#> [[11]]$arrayDesign$lastNoteUpdateEvent
#> NULL
#> 
#> [[11]]$arrayDesign$lastNeedsAttentionEvent
#> NULL
#> 
#> [[11]]$arrayDesign$curationNote
#> NULL
#> 
#> [[11]]$arrayDesign$`_totalInQuery`
#> [1] 0
#> 
#> [[11]]$arrayDesign$id
#> [1] 781
#> 
#> 
#> [[11]]$geneMappingSummaries
#> NULL
#> 
#> [[11]]$description
#> [1] " DYRK1A"
#> 
#> [[11]]$name
#> [1] "7229"
#> 
#> [[11]]$`_totalInQuery`
#> [1] 0
#> 
#> [[11]]$id
#> [1] 22660795
#> 
#> 
#> [[12]]
#> [[12]]$arrayDesign
#> [[12]]$arrayDesign$shortName
#> [1] "GPL16686"
#> 
#> [[12]]$arrayDesign$dateCached
#> NULL
#> 
#> [[12]]$arrayDesign$numProbeSequences
#> NULL
#> 
#> [[12]]$arrayDesign$numProbeAlignments
#> NULL
#> 
#> [[12]]$arrayDesign$numProbesToGenes
#> NULL
#> 
#> [[12]]$arrayDesign$numGenes
#> NULL
#> 
#> [[12]]$arrayDesign$designElementCount
#> NULL
#> 
#> [[12]]$arrayDesign$taxon
#> [1] "human"
#> 
#> [[12]]$arrayDesign$technologyType
#> [1] "ONECOLOR"
#> 
#> [[12]]$arrayDesign$lastGeneMapping
#> NULL
#> 
#> [[12]]$arrayDesign$lastSequenceAnalysis
#> NULL
#> 
#> [[12]]$arrayDesign$lastSequenceUpdate
#> NULL
#> 
#> [[12]]$arrayDesign$blackListed
#> [1] FALSE
#> 
#> [[12]]$arrayDesign$taxonID
#> [1] 1
#> 
#> [[12]]$arrayDesign$color
#> NULL
#> 
#> [[12]]$arrayDesign$expressionExperimentCount
#> NULL
#> 
#> [[12]]$arrayDesign$hasBlatAssociations
#> NULL
#> 
#> [[12]]$arrayDesign$hasGeneAssociations
#> NULL
#> 
#> [[12]]$arrayDesign$hasSequenceAssociations
#> NULL
#> 
#> [[12]]$arrayDesign$isAffymetrixAltCdf
#> [1] FALSE
#> 
#> [[12]]$arrayDesign$isMerged
#> NULL
#> 
#> [[12]]$arrayDesign$isMergee
#> NULL
#> 
#> [[12]]$arrayDesign$isSubsumed
#> NULL
#> 
#> [[12]]$arrayDesign$isSubsumer
#> NULL
#> 
#> [[12]]$arrayDesign$lastRepeatMask
#> NULL
#> 
#> [[12]]$arrayDesign$description
#> [1] " Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html  November 15, 2012: HuGene-2_0-st-v1.na33.hg19.transcript.csv"
#> 
#> [[12]]$arrayDesign$name
#> [1] "[HuGene-2_0-st] Affymetrix Human Gene 2.0 ST Array [transcript (gene) version]"
#> 
#> [[12]]$arrayDesign$lastUpdated
#> [1] 1.544845e+12
#> 
#> [[12]]$arrayDesign$troubled
#> [1] FALSE
#> 
#> [[12]]$arrayDesign$lastTroubledEvent
#> NULL
#> 
#> [[12]]$arrayDesign$needsAttention
#> [1] FALSE
#> 
#> [[12]]$arrayDesign$troubleDetails
#> [1] "No trouble details provided."
#> 
#> [[12]]$arrayDesign$lastNoteUpdateEvent
#> NULL
#> 
#> [[12]]$arrayDesign$lastNeedsAttentionEvent
#> NULL
#> 
#> [[12]]$arrayDesign$curationNote
#> NULL
#> 
#> [[12]]$arrayDesign$`_totalInQuery`
#> [1] 0
#> 
#> [[12]]$arrayDesign$id
#> [1] 787
#> 
#> 
#> [[12]]$geneMappingSummaries
#> NULL
#> 
#> [[12]]$description
#> [1] ""
#> 
#> [[12]]$name
#> [1] "16922724"
#> 
#> [[12]]$`_totalInQuery`
#> [1] 0
#> 
#> [[12]]$id
#> [1] 22874347
#> 
#> 
#> [[13]]
#> [[13]]$arrayDesign
#> [[13]]$arrayDesign$shortName
#> [1] "GPL17692"
#> 
#> [[13]]$arrayDesign$dateCached
#> NULL
#> 
#> [[13]]$arrayDesign$numProbeSequences
#> NULL
#> 
#> [[13]]$arrayDesign$numProbeAlignments
#> NULL
#> 
#> [[13]]$arrayDesign$numProbesToGenes
#> NULL
#> 
#> [[13]]$arrayDesign$numGenes
#> NULL
#> 
#> [[13]]$arrayDesign$designElementCount
#> NULL
#> 
#> [[13]]$arrayDesign$taxon
#> [1] "human"
#> 
#> [[13]]$arrayDesign$technologyType
#> [1] "ONECOLOR"
#> 
#> [[13]]$arrayDesign$lastGeneMapping
#> NULL
#> 
#> [[13]]$arrayDesign$lastSequenceAnalysis
#> NULL
#> 
#> [[13]]$arrayDesign$lastSequenceUpdate
#> NULL
#> 
#> [[13]]$arrayDesign$blackListed
#> [1] FALSE
#> 
#> [[13]]$arrayDesign$taxonID
#> [1] 1
#> 
#> [[13]]$arrayDesign$color
#> NULL
#> 
#> [[13]]$arrayDesign$expressionExperimentCount
#> NULL
#> 
#> [[13]]$arrayDesign$hasBlatAssociations
#> NULL
#> 
#> [[13]]$arrayDesign$hasGeneAssociations
#> NULL
#> 
#> [[13]]$arrayDesign$hasSequenceAssociations
#> NULL
#> 
#> [[13]]$arrayDesign$isAffymetrixAltCdf
#> [1] FALSE
#> 
#> [[13]]$arrayDesign$isMerged
#> NULL
#> 
#> [[13]]$arrayDesign$isMergee
#> NULL
#> 
#> [[13]]$arrayDesign$isSubsumed
#> NULL
#> 
#> [[13]]$arrayDesign$isSubsumer
#> NULL
#> 
#> [[13]]$arrayDesign$lastRepeatMask
#> NULL
#> 
#> [[13]]$arrayDesign$description
#> [1] " Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html  September 06, 2013: HuGene-2_1-st-v1.na33.2.hg19.transcript.csv"
#> 
#> [[13]]$arrayDesign$name
#> [1] "[HuGene-2_1-st] Affymetrix Human Gene 2.1 ST Array [transcript (gene) version]"
#> 
#> [[13]]$arrayDesign$lastUpdated
#> [1] 1.544845e+12
#> 
#> [[13]]$arrayDesign$troubled
#> [1] FALSE
#> 
#> [[13]]$arrayDesign$lastTroubledEvent
#> NULL
#> 
#> [[13]]$arrayDesign$needsAttention
#> [1] FALSE
#> 
#> [[13]]$arrayDesign$troubleDetails
#> [1] "No trouble details provided."
#> 
#> [[13]]$arrayDesign$lastNoteUpdateEvent
#> NULL
#> 
#> [[13]]$arrayDesign$lastNeedsAttentionEvent
#> NULL
#> 
#> [[13]]$arrayDesign$curationNote
#> NULL
#> 
#> [[13]]$arrayDesign$`_totalInQuery`
#> [1] 0
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#> [[13]]$arrayDesign$id
#> [1] 792
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#> 
#> [[13]]$geneMappingSummaries
#> NULL
#> 
#> [[13]]$description
#> [1] ""
#> 
#> [[13]]$name
#> [1] "16922724"
#> 
#> [[13]]$`_totalInQuery`
#> [1] 0
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#> [1] 23041063
#> 
#> 
#> [[14]]
#> [[14]]$arrayDesign
#> [[14]]$arrayDesign$shortName
#> [1] "GPL5175"
#> 
#> [[14]]$arrayDesign$dateCached
#> NULL
#> 
#> [[14]]$arrayDesign$numProbeSequences
#> NULL
#> 
#> [[14]]$arrayDesign$numProbeAlignments
#> NULL
#> 
#> [[14]]$arrayDesign$numProbesToGenes
#> NULL
#> 
#> [[14]]$arrayDesign$numGenes
#> NULL
#> 
#> [[14]]$arrayDesign$designElementCount
#> NULL
#> 
#> [[14]]$arrayDesign$taxon
#> [1] "human"
#> 
#> [[14]]$arrayDesign$technologyType
#> [1] "ONECOLOR"
#> 
#> [[14]]$arrayDesign$lastGeneMapping
#> NULL
#> 
#> [[14]]$arrayDesign$lastSequenceAnalysis
#> NULL
#> 
#> [[14]]$arrayDesign$lastSequenceUpdate
#> NULL
#> 
#> [[14]]$arrayDesign$blackListed
#> [1] FALSE
#> 
#> [[14]]$arrayDesign$taxonID
#> [1] 1
#> 
#> [[14]]$arrayDesign$color
#> NULL
#> 
#> [[14]]$arrayDesign$expressionExperimentCount
#> NULL
#> 
#> [[14]]$arrayDesign$hasBlatAssociations
#> NULL
#> 
#> [[14]]$arrayDesign$hasGeneAssociations
#> NULL
#> 
#> [[14]]$arrayDesign$hasSequenceAssociations
#> NULL
#> 
#> [[14]]$arrayDesign$isAffymetrixAltCdf
#> [1] FALSE
#> 
#> [[14]]$arrayDesign$isMerged
#> NULL
#> 
#> [[14]]$arrayDesign$isMergee
#> NULL
#> 
#> [[14]]$arrayDesign$isSubsumed
#> NULL
#> 
#> [[14]]$arrayDesign$isSubsumer
#> NULL
#> 
#> [[14]]$arrayDesign$lastRepeatMask
#> NULL
#> 
#> [[14]]$arrayDesign$description
#> [1] " Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html  June 03, 2009: annotation table updated with netaffx build 28 Oct 11, 2012: annotation table updated with netaffx build 32"
#> 
#> [[14]]$arrayDesign$name
#> [1] "[HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [transcript (gene) version]"
#> 
#> [[14]]$arrayDesign$lastUpdated
#> [1] 1.544845e+12
#> 
#> [[14]]$arrayDesign$troubled
#> [1] FALSE
#> 
#> [[14]]$arrayDesign$lastTroubledEvent
#> NULL
#> 
#> [[14]]$arrayDesign$needsAttention
#> [1] FALSE
#> 
#> [[14]]$arrayDesign$troubleDetails
#> [1] "No trouble details provided."
#> 
#> [[14]]$arrayDesign$lastNoteUpdateEvent
#> NULL
#> 
#> [[14]]$arrayDesign$lastNeedsAttentionEvent
#> NULL
#> 
#> [[14]]$arrayDesign$curationNote
#> NULL
#> 
#> [[14]]$arrayDesign$`_totalInQuery`
#> [1] 0
#> 
#> [[14]]$arrayDesign$id
#> [1] 652
#> 
#> 
#> [[14]]$geneMappingSummaries
#> NULL
#> 
#> [[14]]$description
#> [1] "Multiple external sequence references: NM_101395,NM_130436,NM_001396,NM_130438,AF108830; "
#> 
#> [[14]]$name
#> [1] "3920566"
#> 
#> [[14]]$`_totalInQuery`
#> [1] 0
#> 
#> [[14]]$id
#> [1] 19587182
#> 
#> 
#> [[15]]
#> [[15]]$arrayDesign
#> [[15]]$arrayDesign$shortName
#> [1] "GPL15789"
#> 
#> [[15]]$arrayDesign$dateCached
#> NULL
#> 
#> [[15]]$arrayDesign$numProbeSequences
#> NULL
#> 
#> [[15]]$arrayDesign$numProbeAlignments
#> NULL
#> 
#> [[15]]$arrayDesign$numProbesToGenes
#> NULL
#> 
#> [[15]]$arrayDesign$numGenes
#> NULL
#> 
#> [[15]]$arrayDesign$designElementCount
#> NULL
#> 
#> [[15]]$arrayDesign$taxon
#> [1] "human"
#> 
#> [[15]]$arrayDesign$technologyType
#> [1] "ONECOLOR"
#> 
#> [[15]]$arrayDesign$lastGeneMapping
#> NULL
#> 
#> [[15]]$arrayDesign$lastSequenceAnalysis
#> NULL
#> 
#> [[15]]$arrayDesign$lastSequenceUpdate
#> NULL
#> 
#> [[15]]$arrayDesign$blackListed
#> [1] FALSE
#> 
#> [[15]]$arrayDesign$taxonID
#> [1] 1
#> 
#> [[15]]$arrayDesign$color
#> NULL
#> 
#> [[15]]$arrayDesign$expressionExperimentCount
#> NULL
#> 
#> [[15]]$arrayDesign$hasBlatAssociations
#> NULL
#> 
#> [[15]]$arrayDesign$hasGeneAssociations
#> NULL
#> 
#> [[15]]$arrayDesign$hasSequenceAssociations
#> NULL
#> 
#> [[15]]$arrayDesign$isAffymetrixAltCdf
#> [1] FALSE
#> 
#> [[15]]$arrayDesign$isMerged
#> NULL
#> 
#> [[15]]$arrayDesign$isMergee
#> NULL
#> 
#> [[15]]$arrayDesign$isSubsumed
#> NULL
#> 
#> [[15]]$arrayDesign$isSubsumer
#> NULL
#> 
#> [[15]]$arrayDesign$lastRepeatMask
#> NULL
#> 
#> [[15]]$arrayDesign$description
#> [1] ""
#> 
#> [[15]]$arrayDesign$name
#> [1] "A-UMCU-HS44K-2.0"
#> 
#> [[15]]$arrayDesign$lastUpdated
#> [1] 1.544846e+12
#> 
#> [[15]]$arrayDesign$troubled
#> [1] FALSE
#> 
#> [[15]]$arrayDesign$lastTroubledEvent
#> NULL
#> 
#> [[15]]$arrayDesign$needsAttention
#> [1] FALSE
#> 
#> [[15]]$arrayDesign$troubleDetails
#> [1] "No trouble details provided."
#> 
#> [[15]]$arrayDesign$lastNoteUpdateEvent
#> NULL
#> 
#> [[15]]$arrayDesign$lastNeedsAttentionEvent
#> NULL
#> 
#> [[15]]$arrayDesign$curationNote
#> NULL
#> 
#> [[15]]$arrayDesign$`_totalInQuery`
#> [1] 0
#> 
#> [[15]]$arrayDesign$id
#> [1] 972
#> 
#> 
#> [[15]]$geneMappingSummaries
#> NULL
#> 
#> [[15]]$description
#> [1] " DYRK1A"
#> 
#> [[15]]$name
#> [1] "4138"
#> 
#> [[15]]$`_totalInQuery`
#> [1] 0
#> 
#> [[15]]$id
#> [1] 25782382
#> 
#> 
#> [[16]]
#> [[16]]$arrayDesign
#> [[16]]$arrayDesign$shortName
#> [1] "GPL15789"
#> 
#> [[16]]$arrayDesign$dateCached
#> NULL
#> 
#> [[16]]$arrayDesign$numProbeSequences
#> NULL
#> 
#> [[16]]$arrayDesign$numProbeAlignments
#> NULL
#> 
#> [[16]]$arrayDesign$numProbesToGenes
#> NULL
#> 
#> [[16]]$arrayDesign$numGenes
#> NULL
#> 
#> [[16]]$arrayDesign$designElementCount
#> NULL
#> 
#> [[16]]$arrayDesign$taxon
#> [1] "human"
#> 
#> [[16]]$arrayDesign$technologyType
#> [1] "ONECOLOR"
#> 
#> [[16]]$arrayDesign$lastGeneMapping
#> NULL
#> 
#> [[16]]$arrayDesign$lastSequenceAnalysis
#> NULL
#> 
#> [[16]]$arrayDesign$lastSequenceUpdate
#> NULL
#> 
#> [[16]]$arrayDesign$blackListed
#> [1] FALSE
#> 
#> [[16]]$arrayDesign$taxonID
#> [1] 1
#> 
#> [[16]]$arrayDesign$color
#> NULL
#> 
#> [[16]]$arrayDesign$expressionExperimentCount
#> NULL
#> 
#> [[16]]$arrayDesign$hasBlatAssociations
#> NULL
#> 
#> [[16]]$arrayDesign$hasGeneAssociations
#> NULL
#> 
#> [[16]]$arrayDesign$hasSequenceAssociations
#> NULL
#> 
#> [[16]]$arrayDesign$isAffymetrixAltCdf
#> [1] FALSE
#> 
#> [[16]]$arrayDesign$isMerged
#> NULL
#> 
#> [[16]]$arrayDesign$isMergee
#> NULL
#> 
#> [[16]]$arrayDesign$isSubsumed
#> NULL
#> 
#> [[16]]$arrayDesign$isSubsumer
#> NULL
#> 
#> [[16]]$arrayDesign$lastRepeatMask
#> NULL
#> 
#> [[16]]$arrayDesign$description
#> [1] ""
#> 
#> [[16]]$arrayDesign$name
#> [1] "A-UMCU-HS44K-2.0"
#> 
#> [[16]]$arrayDesign$lastUpdated
#> [1] 1.544846e+12
#> 
#> [[16]]$arrayDesign$troubled
#> [1] FALSE
#> 
#> [[16]]$arrayDesign$lastTroubledEvent
#> NULL
#> 
#> [[16]]$arrayDesign$needsAttention
#> [1] FALSE
#> 
#> [[16]]$arrayDesign$troubleDetails
#> [1] "No trouble details provided."
#> 
#> [[16]]$arrayDesign$lastNoteUpdateEvent
#> NULL
#> 
#> [[16]]$arrayDesign$lastNeedsAttentionEvent
#> NULL
#> 
#> [[16]]$arrayDesign$curationNote
#> NULL
#> 
#> [[16]]$arrayDesign$`_totalInQuery`
#> [1] 0
#> 
#> [[16]]$arrayDesign$id
#> [1] 972
#> 
#> 
#> [[16]]$geneMappingSummaries
#> NULL
#> 
#> [[16]]$description
#> [1] " DYRK1A"
#> 
#> [[16]]$name
#> [1] "31704"
#> 
#> [[16]]$`_totalInQuery`
#> [1] 0
#> 
#> [[16]]$id
#> [1] 25799943
#> 
#> 
#> [[17]]
#> [[17]]$arrayDesign
#> [[17]]$arrayDesign$shortName
#> [1] "GPL13607"
#> 
#> [[17]]$arrayDesign$dateCached
#> NULL
#> 
#> [[17]]$arrayDesign$numProbeSequences
#> NULL
#> 
#> [[17]]$arrayDesign$numProbeAlignments
#> NULL
#> 
#> [[17]]$arrayDesign$numProbesToGenes
#> NULL
#> 
#> [[17]]$arrayDesign$numGenes
#> NULL
#> 
#> [[17]]$arrayDesign$designElementCount
#> NULL
#> 
#> [[17]]$arrayDesign$taxon
#> [1] "human"
#> 
#> [[17]]$arrayDesign$technologyType
#> [1] "ONECOLOR"
#> 
#> [[17]]$arrayDesign$lastGeneMapping
#> NULL
#> 
#> [[17]]$arrayDesign$lastSequenceAnalysis
#> NULL
#> 
#> [[17]]$arrayDesign$lastSequenceUpdate
#> NULL
#> 
#> [[17]]$arrayDesign$blackListed
#> [1] FALSE
#> 
#> [[17]]$arrayDesign$taxonID
#> [1] 1
#> 
#> [[17]]$arrayDesign$color
#> NULL
#> 
#> [[17]]$arrayDesign$expressionExperimentCount
#> NULL
#> 
#> [[17]]$arrayDesign$hasBlatAssociations
#> NULL
#> 
#> [[17]]$arrayDesign$hasGeneAssociations
#> NULL
#> 
#> [[17]]$arrayDesign$hasSequenceAssociations
#> NULL
#> 
#> [[17]]$arrayDesign$isAffymetrixAltCdf
#> [1] FALSE
#> 
#> [[17]]$arrayDesign$isMerged
#> NULL
#> 
#> [[17]]$arrayDesign$isMergee
#> NULL
#> 
#> [[17]]$arrayDesign$isSubsumed
#> NULL
#> 
#> [[17]]$arrayDesign$isSubsumer
#> NULL
#> 
#> [[17]]$arrayDesign$lastRepeatMask
#> NULL
#> 
#> [[17]]$arrayDesign$description
#> [1] "  SurePrint G3 Human GE 8x60K Microarray  Arrays of this design have barcodes that begin with 16028004 or 2528004.  Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.  The ID column represents the Agilent Feature Extraction feature number.  Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).  To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.  *** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL14550"
#> 
#> [[17]]$arrayDesign$name
#> [1] "Agilent-028004 SurePrint G3 Human GE 8x60K Microarray (Feature Number version)"
#> 
#> [[17]]$arrayDesign$lastUpdated
#> [1] 1.544845e+12
#> 
#> [[17]]$arrayDesign$troubled
#> [1] FALSE
#> 
#> [[17]]$arrayDesign$lastTroubledEvent
#> NULL
#> 
#> [[17]]$arrayDesign$needsAttention
#> [1] FALSE
#> 
#> [[17]]$arrayDesign$troubleDetails
#> [1] "No trouble details provided."
#> 
#> [[17]]$arrayDesign$lastNoteUpdateEvent
#> NULL
#> 
#> [[17]]$arrayDesign$lastNeedsAttentionEvent
#> NULL
#> 
#> [[17]]$arrayDesign$curationNote
#> NULL
#> 
#> [[17]]$arrayDesign$`_totalInQuery`
#> [1] 0
#> 
#> [[17]]$arrayDesign$id
#> [1] 779
#> 
#> 
#> [[17]]$geneMappingSummaries
#> NULL
#> 
#> [[17]]$description
#> [1] ""
#> 
#> [[17]]$name
#> [1] "54027"
#> 
#> [[17]]$`_totalInQuery`
#> [1] 0
#> 
#> [[17]]$id
#> [1] 22570307
#> 
#> 
#> [[18]]
#> [[18]]$arrayDesign
#> [[18]]$arrayDesign$shortName
#> [1] "GPL20844"
#> 
#> [[18]]$arrayDesign$dateCached
#> NULL
#> 
#> [[18]]$arrayDesign$numProbeSequences
#> NULL
#> 
#> [[18]]$arrayDesign$numProbeAlignments
#> NULL
#> 
#> [[18]]$arrayDesign$numProbesToGenes
#> NULL
#> 
#> [[18]]$arrayDesign$numGenes
#> NULL
#> 
#> [[18]]$arrayDesign$designElementCount
#> NULL
#> 
#> [[18]]$arrayDesign$taxon
#> [1] "human"
#> 
#> [[18]]$arrayDesign$technologyType
#> [1] "ONECOLOR"
#> 
#> [[18]]$arrayDesign$lastGeneMapping
#> NULL
#> 
#> [[18]]$arrayDesign$lastSequenceAnalysis
#> NULL
#> 
#> [[18]]$arrayDesign$lastSequenceUpdate
#> NULL
#> 
#> [[18]]$arrayDesign$blackListed
#> [1] FALSE
#> 
#> [[18]]$arrayDesign$taxonID
#> [1] 1
#> 
#> [[18]]$arrayDesign$color
#> NULL
#> 
#> [[18]]$arrayDesign$expressionExperimentCount
#> NULL
#> 
#> [[18]]$arrayDesign$hasBlatAssociations
#> NULL
#> 
#> [[18]]$arrayDesign$hasGeneAssociations
#> NULL
#> 
#> [[18]]$arrayDesign$hasSequenceAssociations
#> NULL
#> 
#> [[18]]$arrayDesign$isAffymetrixAltCdf
#> [1] FALSE
#> 
#> [[18]]$arrayDesign$isMerged
#> NULL
#> 
#> [[18]]$arrayDesign$isMergee
#> NULL
#> 
#> [[18]]$arrayDesign$isSubsumed
#> NULL
#> 
#> [[18]]$arrayDesign$isSubsumer
#> NULL
#> 
#> [[18]]$arrayDesign$lastRepeatMask
#> NULL
#> 
#> [[18]]$arrayDesign$description
#> [1] " Catalog gene expression microarray for Human, v3 8x60K  Arrays of this design have barcodes that begin with 16072363 or 2572363.  Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.  The ID column represents the Agilent Feature Extraction feature number.  Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).  To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions. "
#> 
#> [[18]]$arrayDesign$name
#> [1] "Agilent-072363 SurePrint G3 Human GE v3 8x60K Microarray 039494 [Feature Number Version]"
#> 
#> [[18]]$arrayDesign$lastUpdated
#> [1] 1.544846e+12
#> 
#> [[18]]$arrayDesign$troubled
#> [1] FALSE
#> 
#> [[18]]$arrayDesign$lastTroubledEvent
#> NULL
#> 
#> [[18]]$arrayDesign$needsAttention
#> [1] FALSE
#> 
#> [[18]]$arrayDesign$troubleDetails
#> [1] "No trouble details provided."
#> 
#> [[18]]$arrayDesign$lastNoteUpdateEvent
#> NULL
#> 
#> [[18]]$arrayDesign$lastNeedsAttentionEvent
#> [[18]]$arrayDesign$lastNeedsAttentionEvent$performer
#> [1] "johnphan"
#> 
#> [[18]]$arrayDesign$lastNeedsAttentionEvent$detail
#> NULL
#> 
#> [[18]]$arrayDesign$lastNeedsAttentionEvent$actionName
#> [1] "Update"
#> 
#> [[18]]$arrayDesign$lastNeedsAttentionEvent$eventTypeName
#> [1] "DoesNotNeedAttentionEvent"
#> 
#> [[18]]$arrayDesign$lastNeedsAttentionEvent$action
#> [1] "U"
#> 
#> [[18]]$arrayDesign$lastNeedsAttentionEvent$date
#> [1] 1.531161e+12
#> 
#> [[18]]$arrayDesign$lastNeedsAttentionEvent$note
#> [1] "Does not need attention."
#> 
#> [[18]]$arrayDesign$lastNeedsAttentionEvent$eventType
#> [[18]]$arrayDesign$lastNeedsAttentionEvent$eventType$id
#> [1] 238381
#> 
#> 
#> [[18]]$arrayDesign$lastNeedsAttentionEvent$`_totalInQuery`
#> [1] 0
#> 
#> [[18]]$arrayDesign$lastNeedsAttentionEvent$id
#> [1] 25111669
#> 
#> 
#> [[18]]$arrayDesign$curationNote
#> NULL
#> 
#> [[18]]$arrayDesign$`_totalInQuery`
#> [1] 0
#> 
#> [[18]]$arrayDesign$id
#> [1] 1002
#> 
#> 
#> [[18]]$geneMappingSummaries
#> NULL
#> 
#> [[18]]$description
#> [1] " LTV1"
#> 
#> [[18]]$name
#> [1] "54027"
#> 
#> [[18]]$`_totalInQuery`
#> [1] 0
#> 
#> [[18]]$id
#> [1] 26530411
#> 
#> 
#> [[19]]
#> [[19]]$arrayDesign
#> [[19]]$arrayDesign$shortName
#> [1] "GPL16699"
#> 
#> [[19]]$arrayDesign$dateCached
#> NULL
#> 
#> [[19]]$arrayDesign$numProbeSequences
#> NULL
#> 
#> [[19]]$arrayDesign$numProbeAlignments
#> NULL
#> 
#> [[19]]$arrayDesign$numProbesToGenes
#> NULL
#> 
#> [[19]]$arrayDesign$numGenes
#> NULL
#> 
#> [[19]]$arrayDesign$designElementCount
#> NULL
#> 
#> [[19]]$arrayDesign$taxon
#> [1] "human"
#> 
#> [[19]]$arrayDesign$technologyType
#> [1] "ONECOLOR"
#> 
#> [[19]]$arrayDesign$lastGeneMapping
#> NULL
#> 
#> [[19]]$arrayDesign$lastSequenceAnalysis
#> NULL
#> 
#> [[19]]$arrayDesign$lastSequenceUpdate
#> NULL
#> 
#> [[19]]$arrayDesign$blackListed
#> [1] FALSE
#> 
#> [[19]]$arrayDesign$taxonID
#> [1] 1
#> 
#> [[19]]$arrayDesign$color
#> NULL
#> 
#> [[19]]$arrayDesign$expressionExperimentCount
#> NULL
#> 
#> [[19]]$arrayDesign$hasBlatAssociations
#> NULL
#> 
#> [[19]]$arrayDesign$hasGeneAssociations
#> NULL
#> 
#> [[19]]$arrayDesign$hasSequenceAssociations
#> NULL
#> 
#> [[19]]$arrayDesign$isAffymetrixAltCdf
#> [1] FALSE
#> 
#> [[19]]$arrayDesign$isMerged
#> NULL
#> 
#> [[19]]$arrayDesign$isMergee
#> NULL
#> 
#> [[19]]$arrayDesign$isSubsumed
#> NULL
#> 
#> [[19]]$arrayDesign$isSubsumer
#> NULL
#> 
#> [[19]]$arrayDesign$lastRepeatMask
#> NULL
#> 
#> [[19]]$arrayDesign$description
#> [1] " SurePrint G3 Human GE v2 8x60K Microarray  Design ID: 039494 Design Format: 8 x 60 K Control Grid: IS-62976-8-V2_60kby8_GX_EQC_201000210 Build Version: hg19:GRCh37:Feb2009  Arrays of this design have barcodes that begin with 16039494 or 2539494.  Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.  The ID column represents the Agilent Feature Extraction feature number.  Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).  To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions. "
#> 
#> [[19]]$arrayDesign$name
#> [1] "Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Feature Number version)"
#> 
#> [[19]]$arrayDesign$lastUpdated
#> [1] 1.571696e+12
#> 
#> [[19]]$arrayDesign$troubled
#> [1] FALSE
#> 
#> [[19]]$arrayDesign$lastTroubledEvent
#> NULL
#> 
#> [[19]]$arrayDesign$needsAttention
#> [1] TRUE
#> 
#> [[19]]$arrayDesign$troubleDetails
#> [1] "No trouble details provided."
#> 
#> [[19]]$arrayDesign$lastNoteUpdateEvent
#> NULL
#> 
#> [[19]]$arrayDesign$lastNeedsAttentionEvent
#> NULL
#> 
#> [[19]]$arrayDesign$curationNote
#> NULL
#> 
#> [[19]]$arrayDesign$`_totalInQuery`
#> [1] 0
#> 
#> [[19]]$arrayDesign$id
#> [1] 1060
#> 
#> 
#> [[19]]$geneMappingSummaries
#> NULL
#> 
#> [[19]]$description
#> [1] " LOC100505874"
#> 
#> [[19]]$name
#> [1] "54027"
#> 
#> [[19]]$`_totalInQuery`
#> [1] 0
#> 
#> [[19]]$id
#> [1] 27601153
#> 
#> 
#> [[20]]
#> [[20]]$arrayDesign
#> [[20]]$arrayDesign$shortName
#> [1] "GPL15496"
#> 
#> [[20]]$arrayDesign$dateCached
#> NULL
#> 
#> [[20]]$arrayDesign$numProbeSequences
#> NULL
#> 
#> [[20]]$arrayDesign$numProbeAlignments
#> NULL
#> 
#> [[20]]$arrayDesign$numProbesToGenes
#> NULL
#> 
#> [[20]]$arrayDesign$numGenes
#> NULL
#> 
#> [[20]]$arrayDesign$designElementCount
#> NULL
#> 
#> [[20]]$arrayDesign$taxon
#> [1] "human"
#> 
#> [[20]]$arrayDesign$technologyType
#> [1] "TWOCOLOR"
#> 
#> [[20]]$arrayDesign$lastGeneMapping
#> NULL
#> 
#> [[20]]$arrayDesign$lastSequenceAnalysis
#> NULL
#> 
#> [[20]]$arrayDesign$lastSequenceUpdate
#> NULL
#> 
#> [[20]]$arrayDesign$blackListed
#> [1] FALSE
#> 
#> [[20]]$arrayDesign$taxonID
#> [1] 1
#> 
#> [[20]]$arrayDesign$color
#> NULL
#> 
#> [[20]]$arrayDesign$expressionExperimentCount
#> NULL
#> 
#> [[20]]$arrayDesign$hasBlatAssociations
#> NULL
#> 
#> [[20]]$arrayDesign$hasGeneAssociations
#> NULL
#> 
#> [[20]]$arrayDesign$hasSequenceAssociations
#> NULL
#> 
#> [[20]]$arrayDesign$isAffymetrixAltCdf
#> [1] FALSE
#> 
#> [[20]]$arrayDesign$isMerged
#> NULL
#> 
#> [[20]]$arrayDesign$isMergee
#> NULL
#> 
#> [[20]]$arrayDesign$isSubsumed
#> NULL
#> 
#> [[20]]$arrayDesign$isSubsumer
#> NULL
#> 
#> [[20]]$arrayDesign$lastRepeatMask
#> NULL
#> 
#> [[20]]$arrayDesign$description
#> [1] ""
#> 
#> [[20]]$arrayDesign$name
#> [1] "CodeLink Human Whole Genome Bioarray"
#> 
#> [[20]]$arrayDesign$lastUpdated
#> [1] 1.581711e+12
#> 
#> [[20]]$arrayDesign$troubled
#> [1] FALSE
#> 
#> [[20]]$arrayDesign$lastTroubledEvent
#> NULL
#> 
#> [[20]]$arrayDesign$needsAttention
#> [1] TRUE
#> 
#> [[20]]$arrayDesign$troubleDetails
#> [1] "No trouble details provided."
#> 
#> [[20]]$arrayDesign$lastNoteUpdateEvent
#> NULL
#> 
#> [[20]]$arrayDesign$lastNeedsAttentionEvent
#> NULL
#> 
#> [[20]]$arrayDesign$curationNote
#> NULL
#> 
#> [[20]]$arrayDesign$`_totalInQuery`
#> [1] 0
#> 
#> [[20]]$arrayDesign$id
#> [1] 1109
#> 
#> 
#> [[20]]$geneMappingSummaries
#> NULL
#> 
#> [[20]]$description
#> [1] " TRPC4AP"
#> 
#> [[20]]$name
#> [1] "54027"
#> 
#> [[20]]$`_totalInQuery`
#> [1] 0
#> 
#> [[20]]$id
#> [1] 28291025
#> 
#> 
geneInfo('1859','evidence')
#> [[1]]
#> [[1]]$evidence
#> [[1]]$evidence[[1]]
#> [[1]]$evidence[[1]]$lastUpdated
#> [1] 1.454573e+12
#> 
#> [[1]]$evidence[[1]]$phenotypes
#> [[1]]$evidence[[1]]$phenotypes[[1]]
#> [[1]]$evidence[[1]]$phenotypes[[1]]$valueUri
#> [1] "http://purl.obolibrary.org/obo/DOID_10907"
#> 
#> [[1]]$evidence[[1]]$phenotypes[[1]]$category
#> [1] "Phenotype"
#> 
#> [[1]]$evidence[[1]]$phenotypes[[1]]$categoryUri
#> [1] "http://www.ebi.ac.uk/efo/EFO_0000651"
#> 
#> [[1]]$evidence[[1]]$phenotypes[[1]]$taxon
#> [1] ""
#> 
#> [[1]]$evidence[[1]]$phenotypes[[1]]$root
#> [1] FALSE
#> 
#> [[1]]$evidence[[1]]$phenotypes[[1]]$numTimesUsed
#> [1] 0
#> 
#> [[1]]$evidence[[1]]$phenotypes[[1]]$ontologyUsed
#> NULL
#> 
#> [[1]]$evidence[[1]]$phenotypes[[1]]$privateGeneCount
#> [1] 0
#> 
#> [[1]]$evidence[[1]]$phenotypes[[1]]$publicGeneCount
#> [1] 0
#> 
#> [[1]]$evidence[[1]]$phenotypes[[1]]$urlId
#> [1] "DOID_10907"
#> 
#> [[1]]$evidence[[1]]$phenotypes[[1]]$alreadyPresentInDatabase
#> [1] FALSE
#> 
#> [[1]]$evidence[[1]]$phenotypes[[1]]$alreadyPresentOnGene
#> [1] FALSE
#> 
#> [[1]]$evidence[[1]]$phenotypes[[1]]$child
#> [1] FALSE
#> 
#> [[1]]$evidence[[1]]$phenotypes[[1]]$value
#> [1] "microcephaly"
#> 
#> [[1]]$evidence[[1]]$phenotypes[[1]]$`_totalInQuery`
#> [1] 0
#> 
#> [[1]]$evidence[[1]]$phenotypes[[1]]$id
#> [1] 11440709
#> 
#> 
#> 
#> [[1]]$evidence[[1]]$geneNCBI
#> [1] 1859
#> 
#> [[1]]$evidence[[1]]$evidenceSource
#> [[1]]$evidence[[1]]$evidenceSource$externalUrl
#> [1] "http://dga.nubic.northwestern.edu"
#> 
#> [[1]]$evidence[[1]]$evidenceSource$accession
#> [1] ""
#> 
#> [[1]]$evidence[[1]]$evidenceSource$externalDatabase
#> [[1]]$evidence[[1]]$evidenceSource$externalDatabase$checked
#> [1] FALSE
#> 
#> [[1]]$evidence[[1]]$evidenceSource$externalDatabase$name
#> [1] "DGA"
#> 
#> [[1]]$evidence[[1]]$evidenceSource$externalDatabase$id
#> [1] 85
#> 
#> 
#> [[1]]$evidence[[1]]$evidenceSource$`_totalInQuery`
#> [1] 0
#> 
#> [[1]]$evidence[[1]]$evidenceSource$id
#> [1] 22287816
#> 
#> 
#> [[1]]$evidence[[1]]$phenotypeAssPubVO
#> [[1]]$evidence[[1]]$phenotypeAssPubVO[[1]]
#> [[1]]$evidence[[1]]$phenotypeAssPubVO[[1]]$citationValueObject
#> [[1]]$evidence[[1]]$phenotypeAssPubVO[[1]]$citationValueObject$pubmedURL
#> [1] "https://www.ncbi.nlm.nih.gov/pubmed/18405873"
#> 
#> [[1]]$evidence[[1]]$phenotypeAssPubVO[[1]]$citationValueObject$pubmedAccession
#> [1] "18405873"
#> 
#> [[1]]$evidence[[1]]$phenotypeAssPubVO[[1]]$citationValueObject$citation
#> [1] "Møller, Rikke S et al. (2008) Truncation of the Down syndrome candidate gene DYRK1A in two unrelated patients with microcephaly.; Am J Hum Genet, 82: 1165-70"
#> 
#> [[1]]$evidence[[1]]$phenotypeAssPubVO[[1]]$citationValueObject$retracted
#> [1] FALSE
#> 
#> [[1]]$evidence[[1]]$phenotypeAssPubVO[[1]]$citationValueObject$id
#> [1] 26022
#> 
#> 
#> [[1]]$evidence[[1]]$phenotypeAssPubVO[[1]]$type
#> [1] "Primary"
#> 
#> 
#> 
#> [[1]]$evidence[[1]]$relationship
#> [1] "gene-disease relationship"
#> 
#> [[1]]$evidence[[1]]$isNegativeEvidence
#> [1] FALSE
#> 
#> [[1]]$evidence[[1]]$phenotypesValueUri
#> [[1]]$evidence[[1]]$phenotypesValueUri[[1]]
#> [1] "http://purl.obolibrary.org/obo/DOID_10907"
#> 
#> 
#> [[1]]$evidence[[1]]$taxonCommonName
#> [1] "human"
#> 
#> [[1]]$evidence[[1]]$evidenceCode
#> [1] "IEA"
#> 
#> [[1]]$evidence[[1]]$originalPhenotype
#> [1] ""
#> 
#> [[1]]$evidence[[1]]$scoreValueObject
#> [[1]]$evidence[[1]]$scoreValueObject$scoreName
#> [1] ""
#> 
#> [[1]]$evidence[[1]]$scoreValueObject$scoreValue
#> [1] ""
#> 
#> [[1]]$evidence[[1]]$scoreValueObject$strength
#> NULL
#> 
#> 
#> [[1]]$evidence[[1]]$geneId
#> [1] 38762
#> 
#> [[1]]$evidence[[1]]$homologueEvidence
#> [1] FALSE
#> 
#> [[1]]$evidence[[1]]$evidenceSecurityValueObject
#> [[1]]$evidence[[1]]$evidenceSecurityValueObject$publik
#> [1] TRUE
#> 
#> [[1]]$evidence[[1]]$evidenceSecurityValueObject$currentUserHasWritePermission
#> [1] FALSE
#> 
#> [[1]]$evidence[[1]]$evidenceSecurityValueObject$currentUserIsOwner
#> [1] FALSE
#> 
#> [[1]]$evidence[[1]]$evidenceSecurityValueObject$shared
#> [1] FALSE
#> 
#> [[1]]$evidence[[1]]$evidenceSecurityValueObject$owner
#> [1] "stgeorgn"
#> 
#> 
#> [[1]]$evidence[[1]]$geneOfficialName
#> [1] "dual specificity tyrosine phosphorylation regulated kinase 1A"
#> 
#> [[1]]$evidence[[1]]$externalUrl
#> [1] ""
#> 
#> [[1]]$evidence[[1]]$geneOfficialSymbol
#> [1] "DYRK1A"
#> 
#> [[1]]$evidence[[1]]$containQueryPhenotype
#> [1] FALSE
#> 
#> [[1]]$evidence[[1]]$phenotypeMapping
#> [1] ""
#> 
#> [[1]]$evidence[[1]]$description
#> [1] "GeneRIF: truncating mutations of DYRK1A result in a clinical phenotype including microcephaly."
#> 
#> [[1]]$evidence[[1]]$className
#> [1] "LiteratureEvidenceValueObject"
#> 
#> [[1]]$evidence[[1]]$`_totalInQuery`
#> [1] 0
#> 
#> [[1]]$evidence[[1]]$id
#> [1] 595499
#> 
#> 
#> [[1]]$evidence[[2]]
#> [[1]]$evidence[[2]]$lastUpdated
#> [1] 1.454573e+12
#> 
#> [[1]]$evidence[[2]]$phenotypes
#> [[1]]$evidence[[2]]$phenotypes[[1]]
#> [[1]]$evidence[[2]]$phenotypes[[1]]$valueUri
#> [1] "http://purl.obolibrary.org/obo/DOID_6000"
#> 
#> [[1]]$evidence[[2]]$phenotypes[[1]]$category
#> [1] "Phenotype"
#> 
#> [[1]]$evidence[[2]]$phenotypes[[1]]$categoryUri
#> [1] "http://www.ebi.ac.uk/efo/EFO_0000651"
#> 
#> [[1]]$evidence[[2]]$phenotypes[[1]]$taxon
#> [1] ""
#> 
#> [[1]]$evidence[[2]]$phenotypes[[1]]$root
#> [1] FALSE
#> 
#> [[1]]$evidence[[2]]$phenotypes[[1]]$numTimesUsed
#> [1] 0
#> 
#> [[1]]$evidence[[2]]$phenotypes[[1]]$ontologyUsed
#> NULL
#> 
#> [[1]]$evidence[[2]]$phenotypes[[1]]$privateGeneCount
#> [1] 0
#> 
#> [[1]]$evidence[[2]]$phenotypes[[1]]$publicGeneCount
#> [1] 0
#> 
#> [[1]]$evidence[[2]]$phenotypes[[1]]$urlId
#> [1] "DOID_6000"
#> 
#> [[1]]$evidence[[2]]$phenotypes[[1]]$alreadyPresentInDatabase
#> [1] FALSE
#> 
#> [[1]]$evidence[[2]]$phenotypes[[1]]$alreadyPresentOnGene
#> [1] FALSE
#> 
#> [[1]]$evidence[[2]]$phenotypes[[1]]$child
#> [1] FALSE
#> 
#> [[1]]$evidence[[2]]$phenotypes[[1]]$value
#> [1] "congestive heart failure"
#> 
#> [[1]]$evidence[[2]]$phenotypes[[1]]$`_totalInQuery`
#> [1] 0
#> 
#> [[1]]$evidence[[2]]$phenotypes[[1]]$id
#> [1] 11490276
#> 
#> 
#> 
#> [[1]]$evidence[[2]]$geneNCBI
#> [1] 1859
#> 
#> [[1]]$evidence[[2]]$evidenceSource
#> [[1]]$evidence[[2]]$evidenceSource$externalUrl
#> [1] "http://dga.nubic.northwestern.edu"
#> 
#> [[1]]$evidence[[2]]$evidenceSource$accession
#> [1] ""
#> 
#> [[1]]$evidence[[2]]$evidenceSource$externalDatabase
#> [[1]]$evidence[[2]]$evidenceSource$externalDatabase$checked
#> [1] FALSE
#> 
#> [[1]]$evidence[[2]]$evidenceSource$externalDatabase$name
#> [1] "DGA"
#> 
#> [[1]]$evidence[[2]]$evidenceSource$externalDatabase$id
#> [1] 85
#> 
#> 
#> [[1]]$evidence[[2]]$evidenceSource$`_totalInQuery`
#> [1] 0
#> 
#> [[1]]$evidence[[2]]$evidenceSource$id
#> [1] 22337375
#> 
#> 
#> [[1]]$evidence[[2]]$phenotypeAssPubVO
#> [[1]]$evidence[[2]]$phenotypeAssPubVO[[1]]
#> [[1]]$evidence[[2]]$phenotypeAssPubVO[[1]]$citationValueObject
#> [[1]]$evidence[[2]]$phenotypeAssPubVO[[1]]$citationValueObject$pubmedURL
#> [1] "https://www.ncbi.nlm.nih.gov/pubmed/21102440"
#> 
#> [[1]]$evidence[[2]]$phenotypeAssPubVO[[1]]$citationValueObject$pubmedAccession
#> [1] "21102440"
#> 
#> [[1]]$evidence[[2]]$phenotypeAssPubVO[[1]]$citationValueObject$citation
#> [1] "da Costa Martins, Paula A et al. (2010) MicroRNA-199b targets the nuclear kinase Dyrk1a in an auto-amplification loop promoting calcineurin/NFAT signalling.; Nat Cell Biol, 12: 1220-7"
#> 
#> [[1]]$evidence[[2]]$phenotypeAssPubVO[[1]]$citationValueObject$retracted
#> [1] FALSE
#> 
#> [[1]]$evidence[[2]]$phenotypeAssPubVO[[1]]$citationValueObject$id
#> [1] 92446
#> 
#> 
#> [[1]]$evidence[[2]]$phenotypeAssPubVO[[1]]$type
#> [1] "Primary"
#> 
#> 
#> 
#> [[1]]$evidence[[2]]$relationship
#> [1] "gene-disease relationship"
#> 
#> [[1]]$evidence[[2]]$isNegativeEvidence
#> [1] FALSE
#> 
#> [[1]]$evidence[[2]]$phenotypesValueUri
#> [[1]]$evidence[[2]]$phenotypesValueUri[[1]]
#> [1] "http://purl.obolibrary.org/obo/DOID_6000"
#> 
#> 
#> [[1]]$evidence[[2]]$taxonCommonName
#> [1] "human"
#> 
#> [[1]]$evidence[[2]]$evidenceCode
#> [1] "IEA"
#> 
#> [[1]]$evidence[[2]]$originalPhenotype
#> [1] ""
#> 
#> [[1]]$evidence[[2]]$scoreValueObject
#> [[1]]$evidence[[2]]$scoreValueObject$scoreName
#> [1] ""
#> 
#> [[1]]$evidence[[2]]$scoreValueObject$scoreValue
#> [1] ""
#> 
#> [[1]]$evidence[[2]]$scoreValueObject$strength
#> NULL
#> 
#> 
#> [[1]]$evidence[[2]]$geneId
#> [1] 38762
#> 
#> [[1]]$evidence[[2]]$homologueEvidence
#> [1] FALSE
#> 
#> [[1]]$evidence[[2]]$evidenceSecurityValueObject
#> [[1]]$evidence[[2]]$evidenceSecurityValueObject$publik
#> [1] TRUE
#> 
#> [[1]]$evidence[[2]]$evidenceSecurityValueObject$currentUserHasWritePermission
#> [1] FALSE
#> 
#> [[1]]$evidence[[2]]$evidenceSecurityValueObject$currentUserIsOwner
#> [1] FALSE
#> 
#> [[1]]$evidence[[2]]$evidenceSecurityValueObject$shared
#> [1] FALSE
#> 
#> [[1]]$evidence[[2]]$evidenceSecurityValueObject$owner
#> [1] "stgeorgn"
#> 
#> 
#> [[1]]$evidence[[2]]$geneOfficialName
#> [1] "dual specificity tyrosine phosphorylation regulated kinase 1A"
#> 
#> [[1]]$evidence[[2]]$externalUrl
#> [1] ""
#> 
#> [[1]]$evidence[[2]]$geneOfficialSymbol
#> [1] "DYRK1A"
#> 
#> [[1]]$evidence[[2]]$containQueryPhenotype
#> [1] FALSE
#> 
#> [[1]]$evidence[[2]]$phenotypeMapping
#> [1] ""
#> 
#> [[1]]$evidence[[2]]$description
#> [1] "GeneRIF: Study shows that miR-199b is a direct calcineurin/NFAT target gene that increases in expression in mouse and human heart failure, and targets the nuclear NFAT kinase dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a (Dyrk1a)"
#> 
#> [[1]]$evidence[[2]]$className
#> [1] "LiteratureEvidenceValueObject"
#> 
#> [[1]]$evidence[[2]]$`_totalInQuery`
#> [1] 0
#> 
#> [[1]]$evidence[[2]]$id
#> [1] 645058
#> 
#> 
#> [[1]]$evidence[[3]]
#> [[1]]$evidence[[3]]$lastUpdated
#> [1] 1.454573e+12
#> 
#> [[1]]$evidence[[3]]$phenotypes
#> [[1]]$evidence[[3]]$phenotypes[[1]]
#> [[1]]$evidence[[3]]$phenotypes[[1]]$valueUri
#> [1] "http://purl.obolibrary.org/obo/DOID_10652"
#> 
#> [[1]]$evidence[[3]]$phenotypes[[1]]$category
#> [1] "Phenotype"
#> 
#> [[1]]$evidence[[3]]$phenotypes[[1]]$categoryUri
#> [1] "http://www.ebi.ac.uk/efo/EFO_0000651"
#> 
#> [[1]]$evidence[[3]]$phenotypes[[1]]$taxon
#> [1] ""
#> 
#> [[1]]$evidence[[3]]$phenotypes[[1]]$root
#> [1] FALSE
#> 
#> [[1]]$evidence[[3]]$phenotypes[[1]]$numTimesUsed
#> [1] 0
#> 
#> [[1]]$evidence[[3]]$phenotypes[[1]]$ontologyUsed
#> NULL
#> 
#> [[1]]$evidence[[3]]$phenotypes[[1]]$privateGeneCount
#> [1] 0
#> 
#> [[1]]$evidence[[3]]$phenotypes[[1]]$publicGeneCount
#> [1] 0
#> 
#> [[1]]$evidence[[3]]$phenotypes[[1]]$urlId
#> [1] "DOID_10652"
#> 
#> [[1]]$evidence[[3]]$phenotypes[[1]]$alreadyPresentInDatabase
#> [1] FALSE
#> 
#> [[1]]$evidence[[3]]$phenotypes[[1]]$alreadyPresentOnGene
#> [1] FALSE
#> 
#> [[1]]$evidence[[3]]$phenotypes[[1]]$child
#> [1] FALSE
#> 
#> [[1]]$evidence[[3]]$phenotypes[[1]]$value
#> [1] "Alzheimer's disease"
#> 
#> [[1]]$evidence[[3]]$phenotypes[[1]]$`_totalInQuery`
#> [1] 0
#> 
#> [[1]]$evidence[[3]]$phenotypes[[1]]$id
#> [1] 11438403
#> 
#> 
#> 
#> [[1]]$evidence[[3]]$geneNCBI
#> [1] 1859
#> 
#> [[1]]$evidence[[3]]$evidenceSource
#> [[1]]$evidence[[3]]$evidenceSource$externalUrl
#> [1] "http://dga.nubic.northwestern.edu"
#> 
#> [[1]]$evidence[[3]]$evidenceSource$accession
#> [1] ""
#> 
#> [[1]]$evidence[[3]]$evidenceSource$externalDatabase
#> [[1]]$evidence[[3]]$evidenceSource$externalDatabase$checked
#> [1] FALSE
#> 
#> [[1]]$evidence[[3]]$evidenceSource$externalDatabase$name
#> [1] "DGA"
#> 
#> [[1]]$evidence[[3]]$evidenceSource$externalDatabase$id
#> [1] 85
#> 
#> 
#> [[1]]$evidence[[3]]$evidenceSource$`_totalInQuery`
#> [1] 0
#> 
#> [[1]]$evidence[[3]]$evidenceSource$id
#> [1] 22285518
#> 
#> 
#> [[1]]$evidence[[3]]$phenotypeAssPubVO
#> [[1]]$evidence[[3]]$phenotypeAssPubVO[[1]]
#> [[1]]$evidence[[3]]$phenotypeAssPubVO[[1]]$citationValueObject
#> [[1]]$evidence[[3]]$phenotypeAssPubVO[[1]]$citationValueObject$pubmedURL
#> [1] "https://www.ncbi.nlm.nih.gov/pubmed/18005339"
#> 
#> [[1]]$evidence[[3]]$phenotypeAssPubVO[[1]]$citationValueObject$pubmedAccession
#> [1] "18005339"
#> 
#> [[1]]$evidence[[3]]$phenotypeAssPubVO[[1]]$citationValueObject$citation
#> [1] "Ryoo, Soo-Ryoon et al. (2008) Dual-specificity tyrosine(Y)-phosphorylation regulated kinase 1A-mediated phosphorylation of amyloid precursor protein: evidence for a functional link between Down syndrome and Alzheimer's disease.; J Neurochem, 104: 1333-44"
#> 
#> [[1]]$evidence[[3]]$phenotypeAssPubVO[[1]]$citationValueObject$retracted
#> [1] FALSE
#> 
#> [[1]]$evidence[[3]]$phenotypeAssPubVO[[1]]$citationValueObject$id
#> [1] 45300
#> 
#> 
#> [[1]]$evidence[[3]]$phenotypeAssPubVO[[1]]$type
#> [1] "Primary"
#> 
#> 
#> 
#> [[1]]$evidence[[3]]$relationship
#> [1] "gene-disease relationship"
#> 
#> [[1]]$evidence[[3]]$isNegativeEvidence
#> [1] FALSE
#> 
#> [[1]]$evidence[[3]]$phenotypesValueUri
#> [[1]]$evidence[[3]]$phenotypesValueUri[[1]]
#> [1] "http://purl.obolibrary.org/obo/DOID_10652"
#> 
#> 
#> [[1]]$evidence[[3]]$taxonCommonName
#> [1] "human"
#> 
#> [[1]]$evidence[[3]]$evidenceCode
#> [1] "IEA"
#> 
#> [[1]]$evidence[[3]]$originalPhenotype
#> [1] ""
#> 
#> [[1]]$evidence[[3]]$scoreValueObject
#> [[1]]$evidence[[3]]$scoreValueObject$scoreName
#> [1] ""
#> 
#> [[1]]$evidence[[3]]$scoreValueObject$scoreValue
#> [1] ""
#> 
#> [[1]]$evidence[[3]]$scoreValueObject$strength
#> NULL
#> 
#> 
#> [[1]]$evidence[[3]]$geneId
#> [1] 38762
#> 
#> [[1]]$evidence[[3]]$homologueEvidence
#> [1] FALSE
#> 
#> [[1]]$evidence[[3]]$evidenceSecurityValueObject
#> [[1]]$evidence[[3]]$evidenceSecurityValueObject$publik
#> [1] TRUE
#> 
#> [[1]]$evidence[[3]]$evidenceSecurityValueObject$currentUserHasWritePermission
#> [1] FALSE
#> 
#> [[1]]$evidence[[3]]$evidenceSecurityValueObject$currentUserIsOwner
#> [1] FALSE
#> 
#> [[1]]$evidence[[3]]$evidenceSecurityValueObject$shared
#> [1] FALSE
#> 
#> [[1]]$evidence[[3]]$evidenceSecurityValueObject$owner
#> [1] "stgeorgn"
#> 
#> 
#> [[1]]$evidence[[3]]$geneOfficialName
#> [1] "dual specificity tyrosine phosphorylation regulated kinase 1A"
#> 
#> [[1]]$evidence[[3]]$externalUrl
#> [1] ""
#> 
#> [[1]]$evidence[[3]]$geneOfficialSymbol
#> [1] "DYRK1A"
#> 
#> [[1]]$evidence[[3]]$containQueryPhenotype
#> [1] FALSE
#> 
#> [[1]]$evidence[[3]]$phenotypeMapping
#> [1] ""
#> 
#> [[1]]$evidence[[3]]$description
#> [1] "GeneRIF: Over-expression of DYRK1A in Down syndrome may play a role in accelerating Alzheimer's disease pathogenesis through phosphorylation of beta-amyloid precursor protein (APP)."
#> 
#> [[1]]$evidence[[3]]$className
#> [1] "LiteratureEvidenceValueObject"
#> 
#> [[1]]$evidence[[3]]$`_totalInQuery`
#> [1] 0
#> 
#> [[1]]$evidence[[3]]$id
#> [1] 593201
#> 
#> 
#> [[1]]$evidence[[4]]
#> [[1]]$evidence[[4]]$lastUpdated
#> [1] 1.454573e+12
#> 
#> [[1]]$evidence[[4]]$phenotypes
#> [[1]]$evidence[[4]]$phenotypes[[1]]
#> [[1]]$evidence[[4]]$phenotypes[[1]]$valueUri
#> [1] "http://purl.obolibrary.org/obo/DOID_10652"
#> 
#> [[1]]$evidence[[4]]$phenotypes[[1]]$category
#> [1] "Phenotype"
#> 
#> [[1]]$evidence[[4]]$phenotypes[[1]]$categoryUri
#> [1] "http://www.ebi.ac.uk/efo/EFO_0000651"
#> 
#> [[1]]$evidence[[4]]$phenotypes[[1]]$taxon
#> [1] ""
#> 
#> [[1]]$evidence[[4]]$phenotypes[[1]]$root
#> [1] FALSE
#> 
#> [[1]]$evidence[[4]]$phenotypes[[1]]$numTimesUsed
#> [1] 0
#> 
#> [[1]]$evidence[[4]]$phenotypes[[1]]$ontologyUsed
#> NULL
#> 
#> [[1]]$evidence[[4]]$phenotypes[[1]]$privateGeneCount
#> [1] 0
#> 
#> [[1]]$evidence[[4]]$phenotypes[[1]]$publicGeneCount
#> [1] 0
#> 
#> [[1]]$evidence[[4]]$phenotypes[[1]]$urlId
#> [1] "DOID_10652"
#> 
#> [[1]]$evidence[[4]]$phenotypes[[1]]$alreadyPresentInDatabase
#> [1] FALSE
#> 
#> [[1]]$evidence[[4]]$phenotypes[[1]]$alreadyPresentOnGene
#> [1] FALSE
#> 
#> [[1]]$evidence[[4]]$phenotypes[[1]]$child
#> [1] FALSE
#> 
#> [[1]]$evidence[[4]]$phenotypes[[1]]$value
#> [1] "Alzheimer's disease"
#> 
#> [[1]]$evidence[[4]]$phenotypes[[1]]$`_totalInQuery`
#> [1] 0
#> 
#> [[1]]$evidence[[4]]$phenotypes[[1]]$id
#> [1] 11438404
#> 
#> 
#> 
#> [[1]]$evidence[[4]]$geneNCBI
#> [1] 1859
#> 
#> [[1]]$evidence[[4]]$evidenceSource
#> [[1]]$evidence[[4]]$evidenceSource$externalUrl
#> [1] "http://dga.nubic.northwestern.edu"
#> 
#> [[1]]$evidence[[4]]$evidenceSource$accession
#> [1] ""
#> 
#> [[1]]$evidence[[4]]$evidenceSource$externalDatabase
#> [[1]]$evidence[[4]]$evidenceSource$externalDatabase$checked
#> [1] FALSE
#> 
#> [[1]]$evidence[[4]]$evidenceSource$externalDatabase$name
#> [1] "DGA"
#> 
#> [[1]]$evidence[[4]]$evidenceSource$externalDatabase$id
#> [1] 85
#> 
#> 
#> [[1]]$evidence[[4]]$evidenceSource$`_totalInQuery`
#> [1] 0
#> 
#> [[1]]$evidence[[4]]$evidenceSource$id
#> [1] 22285519
#> 
#> 
#> [[1]]$evidence[[4]]$phenotypeAssPubVO
#> [[1]]$evidence[[4]]$phenotypeAssPubVO[[1]]
#> [[1]]$evidence[[4]]$phenotypeAssPubVO[[1]]$citationValueObject
#> [[1]]$evidence[[4]]$phenotypeAssPubVO[[1]]$citationValueObject$pubmedURL
#> [1] "https://www.ncbi.nlm.nih.gov/pubmed/19995442"
#> 
#> [[1]]$evidence[[4]]$phenotypeAssPubVO[[1]]$citationValueObject$pubmedAccession
#> [1] "19995442"
#> 
#> [[1]]$evidence[[4]]$phenotypeAssPubVO[[1]]$citationValueObject$citation
#> [1] "Vázquez-Higuera, José Luis et al. (2009) DYRK1A genetic variants are not linked to Alzheimer's disease in a Spanish case-control cohort.; BMC Med Genet, 10: 129"
#> 
#> [[1]]$evidence[[4]]$phenotypeAssPubVO[[1]]$citationValueObject$retracted
#> [1] FALSE
#> 
#> [[1]]$evidence[[4]]$phenotypeAssPubVO[[1]]$citationValueObject$id
#> [1] 45301
#> 
#> 
#> [[1]]$evidence[[4]]$phenotypeAssPubVO[[1]]$type
#> [1] "Primary"
#> 
#> 
#> 
#> [[1]]$evidence[[4]]$relationship
#> [1] "gene-disease relationship"
#> 
#> [[1]]$evidence[[4]]$isNegativeEvidence
#> [1] FALSE
#> 
#> [[1]]$evidence[[4]]$phenotypesValueUri
#> [[1]]$evidence[[4]]$phenotypesValueUri[[1]]
#> [1] "http://purl.obolibrary.org/obo/DOID_10652"
#> 
#> 
#> [[1]]$evidence[[4]]$taxonCommonName
#> [1] "human"
#> 
#> [[1]]$evidence[[4]]$evidenceCode
#> [1] "IEA"
#> 
#> [[1]]$evidence[[4]]$originalPhenotype
#> [1] ""
#> 
#> [[1]]$evidence[[4]]$scoreValueObject
#> [[1]]$evidence[[4]]$scoreValueObject$scoreName
#> [1] ""
#> 
#> [[1]]$evidence[[4]]$scoreValueObject$scoreValue
#> [1] ""
#> 
#> [[1]]$evidence[[4]]$scoreValueObject$strength
#> NULL
#> 
#> 
#> [[1]]$evidence[[4]]$geneId
#> [1] 38762
#> 
#> [[1]]$evidence[[4]]$homologueEvidence
#> [1] FALSE
#> 
#> [[1]]$evidence[[4]]$evidenceSecurityValueObject
#> [[1]]$evidence[[4]]$evidenceSecurityValueObject$publik
#> [1] TRUE
#> 
#> [[1]]$evidence[[4]]$evidenceSecurityValueObject$currentUserHasWritePermission
#> [1] FALSE
#> 
#> [[1]]$evidence[[4]]$evidenceSecurityValueObject$currentUserIsOwner
#> [1] FALSE
#> 
#> [[1]]$evidence[[4]]$evidenceSecurityValueObject$shared
#> [1] FALSE
#> 
#> [[1]]$evidence[[4]]$evidenceSecurityValueObject$owner
#> [1] "stgeorgn"
#> 
#> 
#> [[1]]$evidence[[4]]$geneOfficialName
#> [1] "dual specificity tyrosine phosphorylation regulated kinase 1A"
#> 
#> [[1]]$evidence[[4]]$externalUrl
#> [1] ""
#> 
#> [[1]]$evidence[[4]]$geneOfficialSymbol
#> [1] "DYRK1A"
#> 
#> [[1]]$evidence[[4]]$containQueryPhenotype
#> [1] FALSE
#> 
#> [[1]]$evidence[[4]]$phenotypeMapping
#> [1] ""
#> 
#> [[1]]$evidence[[4]]$description
#> [1] "GeneRIF: Our negative findings in the Spanish population argue against the hypothesis that DYRK1A genetic variations are causally related to Alzheimer's disease risk"
#> 
#> [[1]]$evidence[[4]]$className
#> [1] "LiteratureEvidenceValueObject"
#> 
#> [[1]]$evidence[[4]]$`_totalInQuery`
#> [1] 0
#> 
#> [[1]]$evidence[[4]]$id
#> [1] 593202
#> 
#> 
#> [[1]]$evidence[[5]]
#> [[1]]$evidence[[5]]$lastUpdated
#> [1] 1.463543e+12
#> 
#> [[1]]$evidence[[5]]$phenotypes
#> [[1]]$evidence[[5]]$phenotypes[[1]]
#> [[1]]$evidence[[5]]$phenotypes[[1]]$valueUri
#> [1] "http://purl.obolibrary.org/obo/HP_0001324"
#> 
#> [[1]]$evidence[[5]]$phenotypes[[1]]$category
#> [1] "Phenotype"
#> 
#> [[1]]$evidence[[5]]$phenotypes[[1]]$categoryUri
#> [1] "http://www.ebi.ac.uk/efo/EFO_0000651"
#> 
#> [[1]]$evidence[[5]]$phenotypes[[1]]$taxon
#> [1] ""
#> 
#> [[1]]$evidence[[5]]$phenotypes[[1]]$root
#> [1] FALSE
#> 
#> [[1]]$evidence[[5]]$phenotypes[[1]]$numTimesUsed
#> [1] 0
#> 
#> [[1]]$evidence[[5]]$phenotypes[[1]]$ontologyUsed
#> NULL
#> 
#> [[1]]$evidence[[5]]$phenotypes[[1]]$privateGeneCount
#> [1] 0
#> 
#> [[1]]$evidence[[5]]$phenotypes[[1]]$publicGeneCount
#> [1] 0
#> 
#> [[1]]$evidence[[5]]$phenotypes[[1]]$urlId
#> [1] "HP_0001324"
#> 
#> [[1]]$evidence[[5]]$phenotypes[[1]]$alreadyPresentInDatabase
#> [1] FALSE
#> 
#> [[1]]$evidence[[5]]$phenotypes[[1]]$alreadyPresentOnGene
#> [1] FALSE
#> 
#> [[1]]$evidence[[5]]$phenotypes[[1]]$child
#> [1] FALSE
#> 
#> [[1]]$evidence[[5]]$phenotypes[[1]]$value
#> [1] "Muscle weakness"
#> 
#> [[1]]$evidence[[5]]$phenotypes[[1]]$`_totalInQuery`
#> [1] 0
#> 
#> [[1]]$evidence[[5]]$phenotypes[[1]]$id
#> [1] 14403308
#> 
#> 
#> 
#> [[1]]$evidence[[5]]$geneNCBI
#> [1] 1859
#> 
#> [[1]]$evidence[[5]]$evidenceSource
#> [[1]]$evidence[[5]]$evidenceSource$externalUrl
#> [1] "http://ctdbase.org//detail.go?type=relationship&geneAcc=1859&diseaseAcc=MESH:D018908&view=reference"
#> 
#> [[1]]$evidence[[5]]$evidenceSource$accession
#> [1] "/detail.go?type=relationship&geneAcc=1859&diseaseAcc=MESH:D018908&view=reference"
#> 
#> [[1]]$evidence[[5]]$evidenceSource$externalDatabase
#> [[1]]$evidence[[5]]$evidenceSource$externalDatabase$checked
#> [1] FALSE
#> 
#> [[1]]$evidence[[5]]$evidenceSource$externalDatabase$name
#> [1] "CTD"
#> 
#> [[1]]$evidence[[5]]$evidenceSource$externalDatabase$id
#> [1] 73
#> 
#> 
#> [[1]]$evidence[[5]]$evidenceSource$`_totalInQuery`
#> [1] 0
#> 
#> [[1]]$evidence[[5]]$evidenceSource$id
#> [1] 23150139
#> 
#> 
#> [[1]]$evidence[[5]]$phenotypeAssPubVO
#> [[1]]$evidence[[5]]$phenotypeAssPubVO[[1]]
#> [[1]]$evidence[[5]]$phenotypeAssPubVO[[1]]$citationValueObject
#> [[1]]$evidence[[5]]$phenotypeAssPubVO[[1]]$citationValueObject$pubmedURL
#> [1] "https://www.ncbi.nlm.nih.gov/pubmed/23115123"
#> 
#> [[1]]$evidence[[5]]$phenotypeAssPubVO[[1]]$citationValueObject$pubmedAccession
#> [1] "23115123"
#> 
#> [[1]]$evidence[[5]]$phenotypeAssPubVO[[1]]$citationValueObject$citation
#> [1] "Cowley, Patrick M et al. (2012) Functional and biochemical characterization of soleus muscle in Down syndrome mice: insight into the muscle dysfunction seen in the human condition.; Am J Physiol Regul Integr Comp Physiol, 303: R1251-60"
#> 
#> [[1]]$evidence[[5]]$phenotypeAssPubVO[[1]]$citationValueObject$retracted
#> [1] FALSE
#> 
#> [[1]]$evidence[[5]]$phenotypeAssPubVO[[1]]$citationValueObject$id
#> [1] 113636
#> 
#> 
#> [[1]]$evidence[[5]]$phenotypeAssPubVO[[1]]$type
#> [1] "Primary"
#> 
#> 
#> 
#> [[1]]$evidence[[5]]$relationship
#> [1] "biomarker"
#> 
#> [[1]]$evidence[[5]]$isNegativeEvidence
#> [1] FALSE
#> 
#> [[1]]$evidence[[5]]$phenotypesValueUri
#> [[1]]$evidence[[5]]$phenotypesValueUri[[1]]
#> [1] "http://purl.obolibrary.org/obo/HP_0001324"
#> 
#> 
#> [[1]]$evidence[[5]]$taxonCommonName
#> [1] "human"
#> 
#> [[1]]$evidence[[5]]$evidenceCode
#> [1] "TAS"
#> 
#> [[1]]$evidence[[5]]$originalPhenotype
#> [1] "MESH:D018908 (Muscle Weakness)"
#> 
#> [[1]]$evidence[[5]]$scoreValueObject
#> [[1]]$evidence[[5]]$scoreValueObject$scoreName
#> [1] ""
#> 
#> [[1]]$evidence[[5]]$scoreValueObject$scoreValue
#> NULL
#> 
#> [[1]]$evidence[[5]]$scoreValueObject$strength
#> [1] 0.2
#> 
#> 
#> [[1]]$evidence[[5]]$geneId
#> [1] 38762
#> 
#> [[1]]$evidence[[5]]$homologueEvidence
#> [1] FALSE
#> 
#> [[1]]$evidence[[5]]$evidenceSecurityValueObject
#> [[1]]$evidence[[5]]$evidenceSecurityValueObject$publik
#> [1] TRUE
#> 
#> [[1]]$evidence[[5]]$evidenceSecurityValueObject$currentUserHasWritePermission
#> [1] FALSE
#> 
#> [[1]]$evidence[[5]]$evidenceSecurityValueObject$currentUserIsOwner
#> [1] FALSE
#> 
#> [[1]]$evidence[[5]]$evidenceSecurityValueObject$shared
#> [1] FALSE
#> 
#> [[1]]$evidence[[5]]$evidenceSecurityValueObject$owner
#> [1] "jleong"
#> 
#> 
#> [[1]]$evidence[[5]]$geneOfficialName
#> [1] "dual specificity tyrosine phosphorylation regulated kinase 1A"
#> 
#> [[1]]$evidence[[5]]$externalUrl
#> [1] ""
#> 
#> [[1]]$evidence[[5]]$geneOfficialSymbol
#> [1] "DYRK1A"
#> 
#> [[1]]$evidence[[5]]$containQueryPhenotype
#> [1] FALSE
#> 
#> [[1]]$evidence[[5]]$phenotypeMapping
#> [1] "Curated"
#> 
#> [[1]]$evidence[[5]]$description
#> [1] "DiseaseName: Muscle Weakness (MESH:D018908); DirectEvidence: marker/mechanism"
#> 
#> [[1]]$evidence[[5]]$className
#> [1] "LiteratureEvidenceValueObject"
#> 
#> [[1]]$evidence[[5]]$`_totalInQuery`
#> [1] 0
#> 
#> [[1]]$evidence[[5]]$id
#> [1] 928484
#> 
#> 
#> [[1]]$evidence[[6]]
#> [[1]]$evidence[[6]]$lastUpdated
#> [1] 1.463543e+12
#> 
#> [[1]]$evidence[[6]]$phenotypes
#> [[1]]$evidence[[6]]$phenotypes[[1]]
#> [[1]]$evidence[[6]]$phenotypes[[1]]$valueUri
#> [1] "http://purl.obolibrary.org/obo/DOID_14250"
#> 
#> [[1]]$evidence[[6]]$phenotypes[[1]]$category
#> [1] "Phenotype"
#> 
#> [[1]]$evidence[[6]]$phenotypes[[1]]$categoryUri
#> [1] "http://www.ebi.ac.uk/efo/EFO_0000651"
#> 
#> [[1]]$evidence[[6]]$phenotypes[[1]]$taxon
#> [1] ""
#> 
#> [[1]]$evidence[[6]]$phenotypes[[1]]$root
#> [1] FALSE
#> 
#> [[1]]$evidence[[6]]$phenotypes[[1]]$numTimesUsed
#> [1] 0
#> 
#> [[1]]$evidence[[6]]$phenotypes[[1]]$ontologyUsed
#> NULL
#> 
#> [[1]]$evidence[[6]]$phenotypes[[1]]$privateGeneCount
#> [1] 0
#> 
#> [[1]]$evidence[[6]]$phenotypes[[1]]$publicGeneCount
#> [1] 0
#> 
#> [[1]]$evidence[[6]]$phenotypes[[1]]$urlId
#> [1] "DOID_14250"
#> 
#> [[1]]$evidence[[6]]$phenotypes[[1]]$alreadyPresentInDatabase
#> [1] FALSE
#> 
#> [[1]]$evidence[[6]]$phenotypes[[1]]$alreadyPresentOnGene
#> [1] FALSE
#> 
#> [[1]]$evidence[[6]]$phenotypes[[1]]$child
#> [1] FALSE
#> 
#> [[1]]$evidence[[6]]$phenotypes[[1]]$value
#> [1] "Down syndrome"
#> 
#> [[1]]$evidence[[6]]$phenotypes[[1]]$`_totalInQuery`
#> [1] 0
#> 
#> [[1]]$evidence[[6]]$phenotypes[[1]]$id
#> [1] 14403307
#> 
#> 
#> 
#> [[1]]$evidence[[6]]$geneNCBI
#> [1] 1859
#> 
#> [[1]]$evidence[[6]]$evidenceSource
#> [[1]]$evidence[[6]]$evidenceSource$externalUrl
#> [1] "http://ctdbase.org//detail.go?type=relationship&geneAcc=1859&diseaseAcc=MESH:D004314&view=reference"
#> 
#> [[1]]$evidence[[6]]$evidenceSource$accession
#> [1] "/detail.go?type=relationship&geneAcc=1859&diseaseAcc=MESH:D004314&view=reference"
#> 
#> [[1]]$evidence[[6]]$evidenceSource$externalDatabase
#> [[1]]$evidence[[6]]$evidenceSource$externalDatabase$checked
#> [1] FALSE
#> 
#> [[1]]$evidence[[6]]$evidenceSource$externalDatabase$name
#> [1] "CTD"
#> 
#> [[1]]$evidence[[6]]$evidenceSource$externalDatabase$id
#> [1] 73
#> 
#> 
#> [[1]]$evidence[[6]]$evidenceSource$`_totalInQuery`
#> [1] 0
#> 
#> [[1]]$evidence[[6]]$evidenceSource$id
#> [1] 23150138
#> 
#> 
#> [[1]]$evidence[[6]]$phenotypeAssPubVO
#> [[1]]$evidence[[6]]$phenotypeAssPubVO[[1]]
#> [[1]]$evidence[[6]]$phenotypeAssPubVO[[1]]$citationValueObject
#> [[1]]$evidence[[6]]$phenotypeAssPubVO[[1]]$citationValueObject$pubmedURL
#> [1] "https://www.ncbi.nlm.nih.gov/pubmed/23115123"
#> 
#> [[1]]$evidence[[6]]$phenotypeAssPubVO[[1]]$citationValueObject$pubmedAccession
#> [1] "23115123"
#> 
#> [[1]]$evidence[[6]]$phenotypeAssPubVO[[1]]$citationValueObject$citation
#> [1] "Cowley, Patrick M et al. (2012) Functional and biochemical characterization of soleus muscle in Down syndrome mice: insight into the muscle dysfunction seen in the human condition.; Am J Physiol Regul Integr Comp Physiol, 303: R1251-60"
#> 
#> [[1]]$evidence[[6]]$phenotypeAssPubVO[[1]]$citationValueObject$retracted
#> [1] FALSE
#> 
#> [[1]]$evidence[[6]]$phenotypeAssPubVO[[1]]$citationValueObject$id
#> [1] 113636
#> 
#> 
#> [[1]]$evidence[[6]]$phenotypeAssPubVO[[1]]$type
#> [1] "Primary"
#> 
#> 
#> 
#> [[1]]$evidence[[6]]$relationship
#> [1] "biomarker"
#> 
#> [[1]]$evidence[[6]]$isNegativeEvidence
#> [1] FALSE
#> 
#> [[1]]$evidence[[6]]$phenotypesValueUri
#> [[1]]$evidence[[6]]$phenotypesValueUri[[1]]
#> [1] "http://purl.obolibrary.org/obo/DOID_14250"
#> 
#> 
#> [[1]]$evidence[[6]]$taxonCommonName
#> [1] "human"
#> 
#> [[1]]$evidence[[6]]$evidenceCode
#> [1] "TAS"
#> 
#> [[1]]$evidence[[6]]$originalPhenotype
#> [1] "MESH:D004314 (down syndrome)"
#> 
#> [[1]]$evidence[[6]]$scoreValueObject
#> [[1]]$evidence[[6]]$scoreValueObject$scoreName
#> [1] ""
#> 
#> [[1]]$evidence[[6]]$scoreValueObject$scoreValue
#> NULL
#> 
#> [[1]]$evidence[[6]]$scoreValueObject$strength
#> [1] 0.2
#> 
#> 
#> [[1]]$evidence[[6]]$geneId
#> [1] 38762
#> 
#> [[1]]$evidence[[6]]$homologueEvidence
#> [1] FALSE
#> 
#> [[1]]$evidence[[6]]$evidenceSecurityValueObject
#> [[1]]$evidence[[6]]$evidenceSecurityValueObject$publik
#> [1] TRUE
#> 
#> [[1]]$evidence[[6]]$evidenceSecurityValueObject$currentUserHasWritePermission
#> [1] FALSE
#> 
#> [[1]]$evidence[[6]]$evidenceSecurityValueObject$currentUserIsOwner
#> [1] FALSE
#> 
#> [[1]]$evidence[[6]]$evidenceSecurityValueObject$shared
#> [1] FALSE
#> 
#> [[1]]$evidence[[6]]$evidenceSecurityValueObject$owner
#> [1] "jleong"
#> 
#> 
#> [[1]]$evidence[[6]]$geneOfficialName
#> [1] "dual specificity tyrosine phosphorylation regulated kinase 1A"
#> 
#> [[1]]$evidence[[6]]$externalUrl
#> [1] ""
#> 
#> [[1]]$evidence[[6]]$geneOfficialSymbol
#> [1] "DYRK1A"
#> 
#> [[1]]$evidence[[6]]$containQueryPhenotype
#> [1] FALSE
#> 
#> [[1]]$evidence[[6]]$phenotypeMapping
#> [1] "Cross Reference"
#> 
#> [[1]]$evidence[[6]]$description
#> [1] "DiseaseName: Down Syndrome (MESH:D004314); DirectEvidence: marker/mechanism"
#> 
#> [[1]]$evidence[[6]]$className
#> [1] "LiteratureEvidenceValueObject"
#> 
#> [[1]]$evidence[[6]]$`_totalInQuery`
#> [1] 0
#> 
#> [[1]]$evidence[[6]]$id
#> [1] 928483
#> 
#> 
#> [[1]]$evidence[[7]]
#> [[1]]$evidence[[7]]$lastUpdated
#> [1] 1.454573e+12
#> 
#> [[1]]$evidence[[7]]$phenotypes
#> [[1]]$evidence[[7]]$phenotypes[[1]]
#> [[1]]$evidence[[7]]$phenotypes[[1]]$valueUri
#> [1] "http://purl.obolibrary.org/obo/DOID_526"
#> 
#> [[1]]$evidence[[7]]$phenotypes[[1]]$category
#> [1] "Phenotype"
#> 
#> [[1]]$evidence[[7]]$phenotypes[[1]]$categoryUri
#> [1] "http://www.ebi.ac.uk/efo/EFO_0000651"
#> 
#> [[1]]$evidence[[7]]$phenotypes[[1]]$taxon
#> [1] ""
#> 
#> [[1]]$evidence[[7]]$phenotypes[[1]]$root
#> [1] FALSE
#> 
#> [[1]]$evidence[[7]]$phenotypes[[1]]$numTimesUsed
#> [1] 0
#> 
#> [[1]]$evidence[[7]]$phenotypes[[1]]$ontologyUsed
#> NULL
#> 
#> [[1]]$evidence[[7]]$phenotypes[[1]]$privateGeneCount
#> [1] 0
#> 
#> [[1]]$evidence[[7]]$phenotypes[[1]]$publicGeneCount
#> [1] 0
#> 
#> [[1]]$evidence[[7]]$phenotypes[[1]]$urlId
#> [1] "DOID_526"
#> 
#> [[1]]$evidence[[7]]$phenotypes[[1]]$alreadyPresentInDatabase
#> [1] FALSE
#> 
#> [[1]]$evidence[[7]]$phenotypes[[1]]$alreadyPresentOnGene
#> [1] FALSE
#> 
#> [[1]]$evidence[[7]]$phenotypes[[1]]$child
#> [1] FALSE
#> 
#> [[1]]$evidence[[7]]$phenotypes[[1]]$value
#> [1] "Human immunodeficiency virus infectious disease"
#> 
#> [[1]]$evidence[[7]]$phenotypes[[1]]$`_totalInQuery`
#> [1] 0
#> 
#> [[1]]$evidence[[7]]$phenotypes[[1]]$id
#> [1] 14127559
#> 
#> 
#> 
#> [[1]]$evidence[[7]]$geneNCBI
#> [1] 1859
#> 
#> [[1]]$evidence[[7]]$evidenceSource
#> [[1]]$evidence[[7]]$evidenceSource$externalUrl
#> [1] "http://www.genome.gov/gwastudies/index.cfm?gene=DYRK1A"
#> 
#> [[1]]$evidence[[7]]$evidenceSource$accession
#> [1] "?gene=DYRK1A"
#> 
#> [[1]]$evidence[[7]]$evidenceSource$externalDatabase
#> [[1]]$evidence[[7]]$evidenceSource$externalDatabase$checked
#> [1] FALSE
#> 
#> [[1]]$evidence[[7]]$evidenceSource$externalDatabase$name
#> [1] "GWAS_Catalog"
#> 
#> [[1]]$evidence[[7]]$evidenceSource$externalDatabase$id
#> [1] 80
#> 
#> 
#> [[1]]$evidence[[7]]$evidenceSource$`_totalInQuery`
#> [1] 0
#> 
#> [[1]]$evidence[[7]]$evidenceSource$id
#> [1] 22943384
#> 
#> 
#> [[1]]$evidence[[7]]$phenotypeAssPubVO
#> [[1]]$evidence[[7]]$phenotypeAssPubVO[[1]]
#> [[1]]$evidence[[7]]$phenotypeAssPubVO[[1]]$citationValueObject
#> [[1]]$evidence[[7]]$phenotypeAssPubVO[[1]]$citationValueObject$pubmedURL
#> [1] "https://www.ncbi.nlm.nih.gov/pubmed/21364930"
#> 
#> [[1]]$evidence[[7]]$phenotypeAssPubVO[[1]]$citationValueObject$pubmedAccession
#> [1] "21364930"
#> 
#> [[1]]$evidence[[7]]$phenotypeAssPubVO[[1]]$citationValueObject$citation
#> [1] "Bol, Sebastiaan M et al. (2011) Genome-wide association study identifies single nucleotide polymorphism in DYRK1A associated with replication of HIV-1 in monocyte-derived macrophages.; PLoS One, 6: e17190"
#> 
#> [[1]]$evidence[[7]]$phenotypeAssPubVO[[1]]$citationValueObject$retracted
#> [1] FALSE
#> 
#> [[1]]$evidence[[7]]$phenotypeAssPubVO[[1]]$citationValueObject$id
#> [1] 22230
#> 
#> 
#> [[1]]$evidence[[7]]$phenotypeAssPubVO[[1]]$type
#> [1] "Primary"
#> 
#> 
#> 
#> [[1]]$evidence[[7]]$relationship
#> [1] "genetic"
#> 
#> [[1]]$evidence[[7]]$isNegativeEvidence
#> [1] FALSE
#> 
#> [[1]]$evidence[[7]]$phenotypesValueUri
#> [[1]]$evidence[[7]]$phenotypesValueUri[[1]]
#> [1] "http://purl.obolibrary.org/obo/DOID_526"
#> 
#> 
#> [[1]]$evidence[[7]]$taxonCommonName
#> [1] "human"
#> 
#> [[1]]$evidence[[7]]$evidenceCode
#> [1] "TAS"
#> 
#> [[1]]$evidence[[7]]$originalPhenotype
#> [1] "HIV-1 replication (human immunodeficiency virus infectious disease)"
#> 
#> [[1]]$evidence[[7]]$scoreValueObject
#> [[1]]$evidence[[7]]$scoreValueObject$scoreName
#> [1] ""
#> 
#> [[1]]$evidence[[7]]$scoreValueObject$scoreValue
#> NULL
#> 
#> [[1]]$evidence[[7]]$scoreValueObject$strength
#> [1] 0.2
#> 
#> 
#> [[1]]$evidence[[7]]$geneId
#> [1] 38762
#> 
#> [[1]]$evidence[[7]]$homologueEvidence
#> [1] FALSE
#> 
#> [[1]]$evidence[[7]]$evidenceSecurityValueObject
#> [[1]]$evidence[[7]]$evidenceSecurityValueObject$publik
#> [1] TRUE
#> 
#> [[1]]$evidence[[7]]$evidenceSecurityValueObject$currentUserHasWritePermission
#> [1] FALSE
#> 
#> [[1]]$evidence[[7]]$evidenceSecurityValueObject$currentUserIsOwner
#> [1] FALSE
#> 
#> [[1]]$evidence[[7]]$evidenceSecurityValueObject$shared
#> [1] FALSE
#> 
#> [[1]]$evidence[[7]]$evidenceSecurityValueObject$owner
#> [1] "jleong"
#> 
#> 
#> [[1]]$evidence[[7]]$geneOfficialName
#> [1] "dual specificity tyrosine phosphorylation regulated kinase 1A"
#> 
#> [[1]]$evidence[[7]]$externalUrl
#> [1] ""
#> 
#> [[1]]$evidence[[7]]$geneOfficialSymbol
#> [1] "DYRK1A"
#> 
#> [[1]]$evidence[[7]]$containQueryPhenotype
#> [1] FALSE
#> 
#> [[1]]$evidence[[7]]$phenotypeMapping
#> [1] "Curated"
#> 
#> [[1]]$evidence[[7]]$description
#> [1] "Disease/Trait: HIV-1 replication; Initial Sample Description: 191 European ancestry individuals; Replication Sample Description: 31 individuals; Strongest SNP-Risk Allele: rs12483205-?; SNPs: rs12483205; Context: intron; Risk Allele Frequency: NR; p-Value: 5E-6; OR or beta: NR; Platform [SNPs passing QC]: Illumina [494,656]"
#> 
#> [[1]]$evidence[[7]]$className
#> [1] "LiteratureEvidenceValueObject"
#> 
#> [[1]]$evidence[[7]]$`_totalInQuery`
#> [1] 0
#> 
#> [[1]]$evidence[[7]]$id
#> [1] 755678
#> 
#> 
#> [[1]]$evidence[[8]]
#> [[1]]$evidence[[8]]$lastUpdated
#> [1] 1.459478e+12
#> 
#> [[1]]$evidence[[8]]$phenotypes
#> [[1]]$evidence[[8]]$phenotypes[[1]]
#> [[1]]$evidence[[8]]$phenotypes[[1]]$valueUri
#> [1] "http://purl.obolibrary.org/obo/DOID_0060307"
#> 
#> [[1]]$evidence[[8]]$phenotypes[[1]]$category
#> [1] "Phenotype"
#> 
#> [[1]]$evidence[[8]]$phenotypes[[1]]$categoryUri
#> [1] "http://www.ebi.ac.uk/efo/EFO_0000651"
#> 
#> [[1]]$evidence[[8]]$phenotypes[[1]]$taxon
#> [1] ""
#> 
#> [[1]]$evidence[[8]]$phenotypes[[1]]$root
#> [1] FALSE
#> 
#> [[1]]$evidence[[8]]$phenotypes[[1]]$numTimesUsed
#> [1] 0
#> 
#> [[1]]$evidence[[8]]$phenotypes[[1]]$ontologyUsed
#> NULL
#> 
#> [[1]]$evidence[[8]]$phenotypes[[1]]$privateGeneCount
#> [1] 0
#> 
#> [[1]]$evidence[[8]]$phenotypes[[1]]$publicGeneCount
#> [1] 0
#> 
#> [[1]]$evidence[[8]]$phenotypes[[1]]$urlId
#> [1] "DOID_0060307"
#> 
#> [[1]]$evidence[[8]]$phenotypes[[1]]$alreadyPresentInDatabase
#> [1] FALSE
#> 
#> [[1]]$evidence[[8]]$phenotypes[[1]]$alreadyPresentOnGene
#> [1] FALSE
#> 
#> [[1]]$evidence[[8]]$phenotypes[[1]]$child
#> [1] FALSE
#> 
#> [[1]]$evidence[[8]]$phenotypes[[1]]$value
#> [1] "autosomal dominant non-syndromic intellectual disability"
#> 
#> [[1]]$evidence[[8]]$phenotypes[[1]]$`_totalInQuery`
#> [1] 0
#> 
#> [[1]]$evidence[[8]]$phenotypes[[1]]$id
#> [1] 14368885
#> 
#> 
#> 
#> [[1]]$evidence[[8]]$geneNCBI
#> [1] 1859
#> 
#> [[1]]$evidence[[8]]$evidenceSource
#> [[1]]$evidence[[8]]$evidenceSource$externalUrl
#> [1] "http://omim.org/entry/614104"
#> 
#> [[1]]$evidence[[8]]$evidenceSource$accession
#> [1] "614104"
#> 
#> [[1]]$evidence[[8]]$evidenceSource$externalDatabase
#> [[1]]$evidence[[8]]$evidenceSource$externalDatabase$checked
#> [1] FALSE
#> 
#> [[1]]$evidence[[8]]$evidenceSource$externalDatabase$name
#> [1] "OMIM"
#> 
#> [[1]]$evidence[[8]]$evidenceSource$externalDatabase$id
#> [1] 70
#> 
#> 
#> [[1]]$evidence[[8]]$evidenceSource$`_totalInQuery`
#> [1] 0
#> 
#> [[1]]$evidence[[8]]$evidenceSource$id
#> [1] 23122430
#> 
#> 
#> [[1]]$evidence[[8]]$phenotypeAssPubVO
#> [[1]]$evidence[[8]]$phenotypeAssPubVO[[1]]
#> [[1]]$evidence[[8]]$phenotypeAssPubVO[[1]]$citationValueObject
#> [[1]]$evidence[[8]]$phenotypeAssPubVO[[1]]$citationValueObject$pubmedURL
#> [1] "https://www.ncbi.nlm.nih.gov/pubmed/23099646"
#> 
#> [[1]]$evidence[[8]]$phenotypeAssPubVO[[1]]$citationValueObject$pubmedAccession
#> [1] "23099646"
#> 
#> [[1]]$evidence[[8]]$phenotypeAssPubVO[[1]]$citationValueObject$citation
#> [1] "Courcet, Jean-Benoît et al. (2012) The DYRK1A gene is a cause of syndromic intellectual disability with severe microcephaly and epilepsy.; J Med Genet, 49: 731-6"
#> 
#> [[1]]$evidence[[8]]$phenotypeAssPubVO[[1]]$citationValueObject$retracted
#> [1] FALSE
#> 
#> [[1]]$evidence[[8]]$phenotypeAssPubVO[[1]]$citationValueObject$id
#> [1] 40140
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#> 
#> [[1]]$evidence[[8]]$phenotypeAssPubVO[[1]]$type
#> [1] "Primary"
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#> 
#> [[1]]$evidence[[8]]$phenotypeAssPubVO[[2]]
#> [[1]]$evidence[[8]]$phenotypeAssPubVO[[2]]$citationValueObject
#> [[1]]$evidence[[8]]$phenotypeAssPubVO[[2]]$citationValueObject$pubmedURL
#> [1] "https://www.ncbi.nlm.nih.gov/pubmed/23160955"
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#> [[1]]$evidence[[8]]$phenotypeAssPubVO[[2]]$citationValueObject$pubmedAccession
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#> [[1]]$evidence[[8]]$phenotypeAssPubVO[[2]]$citationValueObject$citation
#> [1] "O'Roak, Brian J et al. (2012) Multiplex targeted sequencing identifies recurrently mutated genes in autism spectrum disorders.; Science, 338: 1619-22"
#> 
#> [[1]]$evidence[[8]]$phenotypeAssPubVO[[2]]$citationValueObject$retracted
#> [1] FALSE
#> 
#> [[1]]$evidence[[8]]$phenotypeAssPubVO[[2]]$citationValueObject$id
#> [1] 25992
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#> 
#> [[1]]$evidence[[8]]$phenotypeAssPubVO[[2]]$type
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#> 
#> [[1]]$evidence[[8]]$phenotypeAssPubVO[[3]]
#> [[1]]$evidence[[8]]$phenotypeAssPubVO[[3]]$citationValueObject
#> [[1]]$evidence[[8]]$phenotypeAssPubVO[[3]]$citationValueObject$pubmedURL
#> [1] "https://www.ncbi.nlm.nih.gov/pubmed/18405873"
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#> [[1]]$evidence[[8]]$phenotypeAssPubVO[[3]]$citationValueObject$pubmedAccession
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#> [[1]]$evidence[[8]]$phenotypeAssPubVO[[3]]$citationValueObject$citation
#> [1] "Møller, Rikke S et al. (2008) Truncation of the Down syndrome candidate gene DYRK1A in two unrelated patients with microcephaly.; Am J Hum Genet, 82: 1165-70"
#> 
#> [[1]]$evidence[[8]]$phenotypeAssPubVO[[3]]$citationValueObject$retracted
#> [1] FALSE
#> 
#> [[1]]$evidence[[8]]$phenotypeAssPubVO[[3]]$citationValueObject$id
#> [1] 26022
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#> 
#> [[1]]$evidence[[8]]$phenotypeAssPubVO[[3]]$type
#> [1] "Primary"
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#> 
#> [[1]]$evidence[[8]]$phenotypeAssPubVO[[4]]
#> [[1]]$evidence[[8]]$phenotypeAssPubVO[[4]]$citationValueObject
#> [[1]]$evidence[[8]]$phenotypeAssPubVO[[4]]$citationValueObject$pubmedURL
#> [1] "https://www.ncbi.nlm.nih.gov/pubmed/21294719"
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#> [[1]]$evidence[[8]]$phenotypeAssPubVO[[4]]$citationValueObject$pubmedAccession
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#> [[1]]$evidence[[8]]$phenotypeAssPubVO[[4]]$citationValueObject$citation
#> [1] "van Bon, B W M et al. (2011) Intragenic deletion in DYRK1A leads to mental retardation and primary microcephaly.; Clin Genet, 79: 296-9"
#> 
#> [[1]]$evidence[[8]]$phenotypeAssPubVO[[4]]$citationValueObject$retracted
#> [1] FALSE
#> 
#> [[1]]$evidence[[8]]$phenotypeAssPubVO[[4]]$citationValueObject$id
#> [1] 26023
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#> 
#> [[1]]$evidence[[8]]$phenotypeAssPubVO[[4]]$type
#> [1] "Primary"
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#> 
#> [[1]]$evidence[[8]]$phenotypeAssPubVO[[5]]
#> [[1]]$evidence[[8]]$phenotypeAssPubVO[[5]]$citationValueObject
#> [[1]]$evidence[[8]]$phenotypeAssPubVO[[5]]$citationValueObject$pubmedURL
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#> 
#> [[1]]$evidence[[8]]$phenotypeAssPubVO[[5]]$citationValueObject$pubmedAccession
#> [1] "9106547"
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#> [[1]]$evidence[[8]]$phenotypeAssPubVO[[5]]$citationValueObject$citation
#> [1] "Matsumoto, N et al. (1997) Possible narrowed assignment of the loci of monosomy 21-associated microcephaly and intrauterine growth retardation to a 1.2-Mb segment at 21q22.2.; Am J Hum Genet, 60: 997-9"
#> 
#> [[1]]$evidence[[8]]$phenotypeAssPubVO[[5]]$citationValueObject$retracted
#> [1] FALSE
#> 
#> [[1]]$evidence[[8]]$phenotypeAssPubVO[[5]]$citationValueObject$id
#> [1] 40141
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#> 
#> [[1]]$evidence[[8]]$phenotypeAssPubVO[[5]]$type
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#> 
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#> 
#> [[1]]$evidence[[8]]$relationship
#> [1] "genetic"
#> 
#> [[1]]$evidence[[8]]$isNegativeEvidence
#> [1] FALSE
#> 
#> [[1]]$evidence[[8]]$phenotypesValueUri
#> [[1]]$evidence[[8]]$phenotypesValueUri[[1]]
#> [1] "http://purl.obolibrary.org/obo/DOID_0060307"
#> 
#> 
#> [[1]]$evidence[[8]]$taxonCommonName
#> [1] "human"
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#> [[1]]$evidence[[8]]$evidenceCode
#> [1] "TAS"
#> 
#> [[1]]$evidence[[8]]$originalPhenotype
#> [1] "OMIM:614104"
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#> [[1]]$evidence[[8]]$scoreValueObject
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#> [[1]]$evidence[[8]]$geneId
#> [1] 38762
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#> [[1]]$evidence[[8]]$homologueEvidence
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#> [[1]]$evidence[[8]]$evidenceSecurityValueObject
#> [[1]]$evidence[[8]]$evidenceSecurityValueObject$publik
#> [1] TRUE
#> 
#> [[1]]$evidence[[8]]$evidenceSecurityValueObject$currentUserHasWritePermission
#> [1] FALSE
#> 
#> [[1]]$evidence[[8]]$evidenceSecurityValueObject$currentUserIsOwner
#> [1] FALSE
#> 
#> [[1]]$evidence[[8]]$evidenceSecurityValueObject$shared
#> [1] FALSE
#> 
#> [[1]]$evidence[[8]]$evidenceSecurityValueObject$owner
#> [1] "jleong"
#> 
#> 
#> [[1]]$evidence[[8]]$geneOfficialName
#> [1] "dual specificity tyrosine phosphorylation regulated kinase 1A"
#> 
#> [[1]]$evidence[[8]]$externalUrl
#> [1] ""
#> 
#> [[1]]$evidence[[8]]$geneOfficialSymbol
#> [1] "DYRK1A"
#> 
#> [[1]]$evidence[[8]]$containQueryPhenotype
#> [1] FALSE
#> 
#> [[1]]$evidence[[8]]$phenotypeMapping
#> [1] "Cross Reference"
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#> [[1]]$evidence[[8]]$description
#> [1] "Mental retardation, autosomal dominant 7"
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#> [[1]]$evidence[[8]]$className
#> [1] "LiteratureEvidenceValueObject"
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#> [1] 0
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#> [[1]]$evidence[[8]]$id
#> [1] 901821
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#> 
#> [[1]]$evidence[[9]]
#> [[1]]$evidence[[9]]$lastUpdated
#> [1] 1.454452e+12
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#> [[1]]$evidence[[9]]$phenotypes
#> [[1]]$evidence[[9]]$phenotypes[[1]]
#> [[1]]$evidence[[9]]$phenotypes[[1]]$valueUri
#> [1] "http://purl.obolibrary.org/obo/DOID_0060041"
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#> [1] "Phenotype"
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#> [1] "http://www.ebi.ac.uk/efo/EFO_0000651"
#> 
#> [[1]]$evidence[[9]]$phenotypes[[1]]$taxon
#> [1] ""
#> 
#> [[1]]$evidence[[9]]$phenotypes[[1]]$root
#> [1] FALSE
#> 
#> [[1]]$evidence[[9]]$phenotypes[[1]]$numTimesUsed
#> [1] 0
#> 
#> [[1]]$evidence[[9]]$phenotypes[[1]]$ontologyUsed
#> NULL
#> 
#> [[1]]$evidence[[9]]$phenotypes[[1]]$privateGeneCount
#> [1] 0
#> 
#> [[1]]$evidence[[9]]$phenotypes[[1]]$publicGeneCount
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#> [[1]]$evidence[[9]]$phenotypes[[1]]$urlId
#> [1] "DOID_0060041"
#> 
#> [[1]]$evidence[[9]]$phenotypes[[1]]$alreadyPresentInDatabase
#> [1] FALSE
#> 
#> [[1]]$evidence[[9]]$phenotypes[[1]]$alreadyPresentOnGene
#> [1] FALSE
#> 
#> [[1]]$evidence[[9]]$phenotypes[[1]]$child
#> [1] FALSE
#> 
#> [[1]]$evidence[[9]]$phenotypes[[1]]$value
#> [1] "autism spectrum disorder"
#> 
#> [[1]]$evidence[[9]]$phenotypes[[1]]$`_totalInQuery`
#> [1] 0
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#> [[1]]$evidence[[9]]$phenotypes[[1]]$id
#> [1] 14326257
#> 
#> 
#> 
#> [[1]]$evidence[[9]]$geneNCBI
#> [1] 1859
#> 
#> [[1]]$evidence[[9]]$evidenceSource
#> [[1]]$evidence[[9]]$evidenceSource$externalUrl
#> [1] "https://gene.sfari.org/autdb/GeneDetail/DYRK1A"
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#> [[1]]$evidence[[9]]$evidenceSource$accession
#> [1] "DYRK1A"
#> 
#> [[1]]$evidence[[9]]$evidenceSource$externalDatabase
#> [[1]]$evidence[[9]]$evidenceSource$externalDatabase$checked
#> [1] FALSE
#> 
#> [[1]]$evidence[[9]]$evidenceSource$externalDatabase$name
#> [1] "SFARI"
#> 
#> [[1]]$evidence[[9]]$evidenceSource$externalDatabase$id
#> [1] 68
#> 
#> 
#> [[1]]$evidence[[9]]$evidenceSource$`_totalInQuery`
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#> 
#> [[1]]$evidence[[9]]$evidenceSource$id
#> [1] 23090503
#> 
#> 
#> [[1]]$evidence[[9]]$phenotypeAssPubVO
#> [[1]]$evidence[[9]]$phenotypeAssPubVO[[1]]
#> [[1]]$evidence[[9]]$phenotypeAssPubVO[[1]]$citationValueObject
#> [[1]]$evidence[[9]]$phenotypeAssPubVO[[1]]$citationValueObject$pubmedURL
#> [1] "https://www.ncbi.nlm.nih.gov/pubmed/18405873"
#> 
#> [[1]]$evidence[[9]]$phenotypeAssPubVO[[1]]$citationValueObject$pubmedAccession
#> [1] "18405873"
#> 
#> [[1]]$evidence[[9]]$phenotypeAssPubVO[[1]]$citationValueObject$citation
#> [1] "Møller, Rikke S et al. (2008) Truncation of the Down syndrome candidate gene DYRK1A in two unrelated patients with microcephaly.; Am J Hum Genet, 82: 1165-70"
#> 
#> [[1]]$evidence[[9]]$phenotypeAssPubVO[[1]]$citationValueObject$retracted
#> [1] FALSE
#> 
#> [[1]]$evidence[[9]]$phenotypeAssPubVO[[1]]$citationValueObject$id
#> [1] 26022
#> 
#> 
#> [[1]]$evidence[[9]]$phenotypeAssPubVO[[1]]$type
#> [1] "Primary"
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#> 
#> [[1]]$evidence[[9]]$phenotypeAssPubVO[[2]]
#> [[1]]$evidence[[9]]$phenotypeAssPubVO[[2]]$citationValueObject
#> [[1]]$evidence[[9]]$phenotypeAssPubVO[[2]]$citationValueObject$pubmedURL
#> [1] "https://www.ncbi.nlm.nih.gov/pubmed/23160955"
#> 
#> [[1]]$evidence[[9]]$phenotypeAssPubVO[[2]]$citationValueObject$pubmedAccession
#> [1] "23160955"
#> 
#> [[1]]$evidence[[9]]$phenotypeAssPubVO[[2]]$citationValueObject$citation
#> [1] "O'Roak, Brian J et al. (2012) Multiplex targeted sequencing identifies recurrently mutated genes in autism spectrum disorders.; Science, 338: 1619-22"
#> 
#> [[1]]$evidence[[9]]$phenotypeAssPubVO[[2]]$citationValueObject$retracted
#> [1] FALSE
#> 
#> [[1]]$evidence[[9]]$phenotypeAssPubVO[[2]]$citationValueObject$id
#> [1] 25992
#> 
#> 
#> [[1]]$evidence[[9]]$phenotypeAssPubVO[[2]]$type
#> [1] "Primary"
#> 
#> 
#> [[1]]$evidence[[9]]$phenotypeAssPubVO[[3]]
#> [[1]]$evidence[[9]]$phenotypeAssPubVO[[3]]$citationValueObject
#> [[1]]$evidence[[9]]$phenotypeAssPubVO[[3]]$citationValueObject$pubmedURL
#> [1] "https://www.ncbi.nlm.nih.gov/pubmed/22495309"
#> 
#> [[1]]$evidence[[9]]$phenotypeAssPubVO[[3]]$citationValueObject$pubmedAccession
#> [1] "22495309"
#> 
#> [[1]]$evidence[[9]]$phenotypeAssPubVO[[3]]$citationValueObject$citation
#> [1] "O'Roak, Brian J et al. (2012) Sporadic autism exomes reveal a highly interconnected protein network of de novo mutations.; Nature, 485: 246-50"
#> 
#> [[1]]$evidence[[9]]$phenotypeAssPubVO[[3]]$citationValueObject$retracted
#> [1] FALSE
#> 
#> [[1]]$evidence[[9]]$phenotypeAssPubVO[[3]]$citationValueObject$id
#> [1] 14953
#> 
#> 
#> [[1]]$evidence[[9]]$phenotypeAssPubVO[[3]]$type
#> [1] "Primary"
#> 
#> 
#> [[1]]$evidence[[9]]$phenotypeAssPubVO[[4]]
#> [[1]]$evidence[[9]]$phenotypeAssPubVO[[4]]$citationValueObject
#> [[1]]$evidence[[9]]$phenotypeAssPubVO[[4]]$citationValueObject$pubmedURL
#> [1] "https://www.ncbi.nlm.nih.gov/pubmed/25641759"
#> 
#> [[1]]$evidence[[9]]$phenotypeAssPubVO[[4]]$citationValueObject$pubmedAccession
#> [1] "25641759"
#> 
#> [[1]]$evidence[[9]]$phenotypeAssPubVO[[4]]$citationValueObject$citation
#> [1] "Ruaud, Lyse et al. (2015) DYRK1A mutations in two unrelated patients.; Eur J Med Genet, 58: 168-74"
#> 
#> [[1]]$evidence[[9]]$phenotypeAssPubVO[[4]]$citationValueObject$retracted
#> [1] FALSE
#> 
#> [[1]]$evidence[[9]]$phenotypeAssPubVO[[4]]$citationValueObject$id
#> [1] 114164
#> 
#> 
#> [[1]]$evidence[[9]]$phenotypeAssPubVO[[4]]$type
#> [1] "Primary"
#> 
#> 
#> [[1]]$evidence[[9]]$phenotypeAssPubVO[[5]]
#> [[1]]$evidence[[9]]$phenotypeAssPubVO[[5]]$citationValueObject
#> [[1]]$evidence[[9]]$phenotypeAssPubVO[[5]]$citationValueObject$pubmedURL
#> [1] "https://www.ncbi.nlm.nih.gov/pubmed/26544041"
#> 
#> [[1]]$evidence[[9]]$phenotypeAssPubVO[[5]]$citationValueObject$pubmedAccession
#> [1] "26544041"
#> 
#> [[1]]$evidence[[9]]$phenotypeAssPubVO[[5]]$citationValueObject$citation
#> [1] "Zhang, Yujia et al. (2015) Gene Mutation Analysis in 253 Chinese Children with Unexplained Epilepsy and Intellectual/Developmental Disabilities.; PLoS One, 10: e0141782"
#> 
#> [[1]]$evidence[[9]]$phenotypeAssPubVO[[5]]$citationValueObject$retracted
#> [1] FALSE
#> 
#> [[1]]$evidence[[9]]$phenotypeAssPubVO[[5]]$citationValueObject$id
#> [1] 115916
#> 
#> 
#> [[1]]$evidence[[9]]$phenotypeAssPubVO[[5]]$type
#> [1] "Primary"
#> 
#> 
#> [[1]]$evidence[[9]]$phenotypeAssPubVO[[6]]
#> [[1]]$evidence[[9]]$phenotypeAssPubVO[[6]]$citationValueObject
#> [[1]]$evidence[[9]]$phenotypeAssPubVO[[6]]$citationValueObject$pubmedURL
#> [1] "https://www.ncbi.nlm.nih.gov/pubmed/25363768"
#> 
#> [[1]]$evidence[[9]]$phenotypeAssPubVO[[6]]$citationValueObject$pubmedAccession
#> [1] "25363768"
#> 
#> [[1]]$evidence[[9]]$phenotypeAssPubVO[[6]]$citationValueObject$citation
#> [1] "Iossifov, Ivan et al. (2014) The contribution of de novo coding mutations to autism spectrum disorder.; Nature, 515: 216-21"
#> 
#> [[1]]$evidence[[9]]$phenotypeAssPubVO[[6]]$citationValueObject$retracted
#> [1] FALSE
#> 
#> [[1]]$evidence[[9]]$phenotypeAssPubVO[[6]]$citationValueObject$id
#> [1] 114129
#> 
#> 
#> [[1]]$evidence[[9]]$phenotypeAssPubVO[[6]]$type
#> [1] "Primary"
#> 
#> 
#> [[1]]$evidence[[9]]$phenotypeAssPubVO[[7]]
#> [[1]]$evidence[[9]]$phenotypeAssPubVO[[7]]$citationValueObject
#> [[1]]$evidence[[9]]$phenotypeAssPubVO[[7]]$citationValueObject$pubmedURL
#> [1] "https://www.ncbi.nlm.nih.gov/pubmed/22542183"
#> 
#> [[1]]$evidence[[9]]$phenotypeAssPubVO[[7]]$citationValueObject$pubmedAccession
#> [1] "22542183"
#> 
#> [[1]]$evidence[[9]]$phenotypeAssPubVO[[7]]$citationValueObject$citation
#> [1] "Iossifov, Ivan et al. (2012) De novo gene disruptions in children on the autistic spectrum.; Neuron, 74: 285-99"
#> 
#> [[1]]$evidence[[9]]$phenotypeAssPubVO[[7]]$citationValueObject$retracted
#> [1] FALSE
#> 
#> [[1]]$evidence[[9]]$phenotypeAssPubVO[[7]]$citationValueObject$id
#> [1] 24225
#> 
#> 
#> [[1]]$evidence[[9]]$phenotypeAssPubVO[[7]]$type
#> [1] "Primary"
#> 
#> 
#> [[1]]$evidence[[9]]$phenotypeAssPubVO[[8]]
#> [[1]]$evidence[[9]]$phenotypeAssPubVO[[8]]$citationValueObject
#> [[1]]$evidence[[9]]$phenotypeAssPubVO[[8]]$citationValueObject$pubmedURL
#> [1] "https://www.ncbi.nlm.nih.gov/pubmed/25167861"
#> 
#> [[1]]$evidence[[9]]$phenotypeAssPubVO[[8]]$citationValueObject$pubmedAccession
#> [1] "25167861"
#> 
#> [[1]]$evidence[[9]]$phenotypeAssPubVO[[8]]$citationValueObject$citation
#> [1] "Redin, Claire et al. (2014) Efficient strategy for the molecular diagnosis of intellectual disability using targeted high-throughput sequencing.; J Med Genet, 51: 724-36"
#> 
#> [[1]]$evidence[[9]]$phenotypeAssPubVO[[8]]$citationValueObject$retracted
#> [1] FALSE
#> 
#> [[1]]$evidence[[9]]$phenotypeAssPubVO[[8]]$citationValueObject$id
#> [1] 114133
#> 
#> 
#> [[1]]$evidence[[9]]$phenotypeAssPubVO[[8]]$type
#> [1] "Primary"
#> 
#> 
#> [[1]]$evidence[[9]]$phenotypeAssPubVO[[9]]
#> [[1]]$evidence[[9]]$phenotypeAssPubVO[[9]]$citationValueObject
#> [[1]]$evidence[[9]]$phenotypeAssPubVO[[9]]$citationValueObject$pubmedURL
#> [1] "https://www.ncbi.nlm.nih.gov/pubmed/21294719"
#> 
#> [[1]]$evidence[[9]]$phenotypeAssPubVO[[9]]$citationValueObject$pubmedAccession
#> [1] "21294719"
#> 
#> [[1]]$evidence[[9]]$phenotypeAssPubVO[[9]]$citationValueObject$citation
#> [1] "van Bon, B W M et al. (2011) Intragenic deletion in DYRK1A leads to mental retardation and primary microcephaly.; Clin Genet, 79: 296-9"
#> 
#> [[1]]$evidence[[9]]$phenotypeAssPubVO[[9]]$citationValueObject$retracted
#> [1] FALSE
#> 
#> [[1]]$evidence[[9]]$phenotypeAssPubVO[[9]]$citationValueObject$id
#> [1] 26023
#> 
#> 
#> [[1]]$evidence[[9]]$phenotypeAssPubVO[[9]]$type
#> [1] "Primary"
#> 
#> 
#> [[1]]$evidence[[9]]$phenotypeAssPubVO[[10]]
#> [[1]]$evidence[[9]]$phenotypeAssPubVO[[10]]$citationValueObject
#> [[1]]$evidence[[9]]$phenotypeAssPubVO[[10]]$citationValueObject$pubmedURL
#> [1] "https://www.ncbi.nlm.nih.gov/pubmed/25533962"
#> 
#> [[1]]$evidence[[9]]$phenotypeAssPubVO[[10]]$citationValueObject$pubmedAccession
#> [1] "25533962"
#> 
#> [[1]]$evidence[[9]]$phenotypeAssPubVO[[10]]$citationValueObject$citation
#> [1] "Deciphering Developmental Disorders Study (2015) Large-scale discovery of novel genetic causes of developmental disorders.; Nature, 519: 223-8"
#> 
#> [[1]]$evidence[[9]]$phenotypeAssPubVO[[10]]$citationValueObject$retracted
#> [1] FALSE
#> 
#> [[1]]$evidence[[9]]$phenotypeAssPubVO[[10]]$citationValueObject$id
#> [1] 113184
#> 
#> 
#> [[1]]$evidence[[9]]$phenotypeAssPubVO[[10]]$type
#> [1] "Primary"
#> 
#> 
#> 
#> [[1]]$evidence[[9]]$relationship
#> [1] "gene-disease relationship"
#> 
#> [[1]]$evidence[[9]]$isNegativeEvidence
#> [1] FALSE
#> 
#> [[1]]$evidence[[9]]$phenotypesValueUri
#> [[1]]$evidence[[9]]$phenotypesValueUri[[1]]
#> [1] "http://purl.obolibrary.org/obo/DOID_0060041"
#> 
#> 
#> [[1]]$evidence[[9]]$taxonCommonName
#> [1] "human"
#> 
#> [[1]]$evidence[[9]]$evidenceCode
#> [1] "TAS"
#> 
#> [[1]]$evidence[[9]]$originalPhenotype
#> [1] "autism spectrum disorder"
#> 
#> [[1]]$evidence[[9]]$scoreValueObject
#> [[1]]$evidence[[9]]$scoreValueObject$scoreName
#> [1] "SFARIGeneScore"
#> 
#> [[1]]$evidence[[9]]$scoreValueObject$scoreValue
#> [1] "1S"
#> 
#> [[1]]$evidence[[9]]$scoreValueObject$strength
#> [1] 1
#> 
#> 
#> [[1]]$evidence[[9]]$geneId
#> [1] 38762
#> 
#> [[1]]$evidence[[9]]$homologueEvidence
#> [1] FALSE
#> 
#> [[1]]$evidence[[9]]$evidenceSecurityValueObject
#> [[1]]$evidence[[9]]$evidenceSecurityValueObject$publik
#> [1] TRUE
#> 
#> [[1]]$evidence[[9]]$evidenceSecurityValueObject$currentUserHasWritePermission
#> [1] FALSE
#> 
#> [[1]]$evidence[[9]]$evidenceSecurityValueObject$currentUserIsOwner
#> [1] FALSE
#> 
#> [[1]]$evidence[[9]]$evidenceSecurityValueObject$shared
#> [1] FALSE
#> 
#> [[1]]$evidence[[9]]$evidenceSecurityValueObject$owner
#> [1] "jleong"
#> 
#> 
#> [[1]]$evidence[[9]]$geneOfficialName
#> [1] "dual specificity tyrosine phosphorylation regulated kinase 1A"
#> 
#> [[1]]$evidence[[9]]$externalUrl
#> [1] ""
#> 
#> [[1]]$evidence[[9]]$geneOfficialSymbol
#> [1] "DYRK1A"
#> 
#> [[1]]$evidence[[9]]$containQueryPhenotype
#> [1] FALSE
#> 
#> [[1]]$evidence[[9]]$phenotypeMapping
#> [1] ""
#> 
#> [[1]]$evidence[[9]]$description
#> [1] "Syndromic ; De novo variants in the DYRK1A gene in autistic probands from simplex families have been identified in two separate reports (O'Roak et al., 2012; Iossifov et al., 2012). A total of four de novo LoF variants in the DYRK1A gene were identified in ASD probands from the Simons Simplex Collection (PMIDs 22495309, 22542183, 23160955, 25363768).  Analysis of rare coding variation in 3,871 ASD cases and 9,937 ancestry-matched or paternal controls from the Autism Sequencing Consortium (ASC) identified DYRK1A as a gene meeting high statistical significance with a FDR ???0.01, meaning that this gene had a ???99% chance of being a true autism gene (PMID 25363760).  Resequencing of the DYRK1A gene in 4716 new cases with DD/ID or ASD identified five novel truncating variants, three of which were confirmed de novo and were observed in cases with ASD and intellectual disability; no truncating variants in DYRK1A were observed in 6503 individuals from NHLBI or in 2193 unaffected SSC siblings (PMID 25707398).  Phenotypic comparison of 15 cases with DYRK1A disruptions in PMID 25707398 identified a syndromic disorder characterized by ASD, intellectual disability, microcephaly and other shared phenotypes."
#> 
#> [[1]]$evidence[[9]]$className
#> [1] "LiteratureEvidenceValueObject"
#> 
#> [[1]]$evidence[[9]]$`_totalInQuery`
#> [1] 0
#> 
#> [[1]]$evidence[[9]]$id
#> [1] 870732
#> 
#> 
#> 
#> [[1]]$phenotypesValueUri
#> list()
#> 
#> [[1]]$compositeSequenceCount
#> [1] 0
#> 
#> [[1]]$phenotypes
#> NULL
#> 
#> [[1]]$officialSymbol
#> [1] "DYRK1A"
#> 
#> [[1]]$taxonId
#> [1] 1
#> 
#> [[1]]$homologues
#> NULL
#> 
#> [[1]]$taxonCommonName
#> [1] "human"
#> 
#> [[1]]$score
#> NULL
#> 
#> [[1]]$officialName
#> [1] "dual specificity tyrosine phosphorylation regulated kinase 1A"
#> 
#> [[1]]$numGoTerms
#> [1] 0
#> 
#> [[1]]$ncbiId
#> [1] 1859
#> 
#> [[1]]$ensemblId
#> [1] "ENSG00000157540"
#> 
#> [[1]]$associatedExperimentCount
#> [1] 0
#> 
#> [[1]]$geneSets
#> NULL
#> 
#> [[1]]$isQuery
#> [1] TRUE
#> 
#> [[1]]$multifunctionalityRank
#> [1] 0
#> 
#> [[1]]$nodeDegreeNegRanks
#> NULL
#> 
#> [[1]]$nodeDegreePosRanks
#> NULL
#> 
#> [[1]]$nodeDegreesNeg
#> NULL
#> 
#> [[1]]$nodeDegreesPos
#> NULL
#> 
#> [[1]]$platformCount
#> NULL
#> 
#> [[1]]$taxonScientificName
#> [1] "Homo sapiens"
#> 
#> [[1]]$aliases
#> NULL
#> 
#> [[1]]$description
#> [1] "Imported from NCBI gene; Nomenclature status: INTERIM"
#> 
#> [[1]]$name
#> [1] "DYRK1A"
#> 
#> [[1]]$`_totalInQuery`
#> [1] 0
#> 
#> [[1]]$id
#> [1] 38762
#> 
#>