compileMetadata.RdCompiles metadata for a single dataset that includes sample and sample
metadata. Note that this function uses memoised functions to speed up loops.
If something changes in gemma as you work and you want to update, restart
your session or use forgetGemmaMemoised
compileMetadata( dataset, collapseBioMaterials = TRUE, outputType = c("data.frame", "list"), memoised = TRUE )
| dataset | Character. Can either be the dataset ID or its short name (e.g. GSE1234). |
|---|---|
| collapseBioMaterials | If TRUE collapses samples into biomaterials Some datasets represent |
| outputType | data.frame or list. A data.frame will return a single data frame including experiment and sample data. List output will return a list of length 2 where experiment and sample data are separated. |
| memoised | Should memoisation be used for base API calls. Useful if calling
a large number of datasets in succession, defaults to TRUE.
Use |
A data.frame.
compileMetadata('GSE11322')#> datasetID datasetName taxon #> WT_basal_4 1017 GSE11322 mouse #> KO_BDNF_48h_5 1017 GSE11322 mouse #> WT_BDNF_24h_5 1017 GSE11322 mouse #> WT_BDNF_48h_2 1017 GSE11322 mouse #> WT_BDNF_24h_1 1017 GSE11322 mouse #> WT_BDNF_24h_3 1017 GSE11322 mouse #> KO_basal_1 1017 GSE11322 mouse #> KO_basal_3 1017 GSE11322 mouse #> WT_BDNF_48h_3 1017 GSE11322 mouse #> WT_BDNF_24h_4 1017 GSE11322 mouse #> WT_BDNF_48h_5 1017 GSE11322 mouse #> KO_BDNF_48h_1 1017 GSE11322 mouse #> KO_BDNF_24h_1 1017 GSE11322 mouse #> KO_BDNF_24h_3 1017 GSE11322 mouse #> WT_basal_2 1017 GSE11322 mouse #> KO_BDNF_48h_3 1017 GSE11322 mouse #> KO_BDNF_48h_4 1017 GSE11322 mouse #> WT_BDNF_48h_1 1017 GSE11322 mouse #> WT_basal_5 1017 GSE11322 mouse #> KO_basal_2 1017 GSE11322 mouse #> WT_BDNF_24h_2 1017 GSE11322 mouse #> KO_basal_4 1017 GSE11322 mouse #> KO_basal_5 1017 GSE11322 mouse #> WT_BDNF_48h_4 1017 GSE11322 mouse #> KO_BDNF_24h_5 1017 GSE11322 mouse #> KO_BDNF_48h_2 1017 GSE11322 mouse #> KO_BDNF_24h_2 1017 GSE11322 mouse #> WT_basal_1 1017 GSE11322 mouse #> KO_BDNF_24h_4 1017 GSE11322 mouse #> WT_basal_3 1017 GSE11322 mouse #> experimentAnnotClass #> WT_basal_4 organism part|treatment|genotype|cell type|genotype #> KO_BDNF_48h_5 organism part|treatment|genotype|cell type|genotype #> WT_BDNF_24h_5 organism part|treatment|genotype|cell type|genotype #> WT_BDNF_48h_2 organism part|treatment|genotype|cell type|genotype #> WT_BDNF_24h_1 organism part|treatment|genotype|cell type|genotype #> WT_BDNF_24h_3 organism part|treatment|genotype|cell type|genotype #> KO_basal_1 organism part|treatment|genotype|cell type|genotype #> KO_basal_3 organism part|treatment|genotype|cell type|genotype #> WT_BDNF_48h_3 organism part|treatment|genotype|cell type|genotype #> WT_BDNF_24h_4 organism part|treatment|genotype|cell type|genotype #> WT_BDNF_48h_5 organism part|treatment|genotype|cell type|genotype #> KO_BDNF_48h_1 organism part|treatment|genotype|cell type|genotype #> KO_BDNF_24h_1 organism part|treatment|genotype|cell type|genotype #> KO_BDNF_24h_3 organism part|treatment|genotype|cell type|genotype #> WT_basal_2 organism part|treatment|genotype|cell type|genotype #> KO_BDNF_48h_3 organism part|treatment|genotype|cell type|genotype #> KO_BDNF_48h_4 organism part|treatment|genotype|cell type|genotype #> WT_BDNF_48h_1 organism part|treatment|genotype|cell type|genotype #> WT_basal_5 organism part|treatment|genotype|cell type|genotype #> KO_basal_2 organism part|treatment|genotype|cell type|genotype #> WT_BDNF_24h_2 organism part|treatment|genotype|cell type|genotype #> KO_basal_4 organism part|treatment|genotype|cell type|genotype #> KO_basal_5 organism part|treatment|genotype|cell type|genotype #> WT_BDNF_48h_4 organism part|treatment|genotype|cell type|genotype #> KO_BDNF_24h_5 organism part|treatment|genotype|cell type|genotype #> KO_BDNF_48h_2 organism part|treatment|genotype|cell type|genotype #> KO_BDNF_24h_2 organism part|treatment|genotype|cell type|genotype #> WT_basal_1 organism part|treatment|genotype|cell type|genotype #> KO_BDNF_24h_4 organism part|treatment|genotype|cell type|genotype #> WT_basal_3 organism part|treatment|genotype|cell type|genotype #> experimentAnnotClassOntoID #> WT_basal_4 EFO_0000635|EFO_0000727|EFO_0000513|EFO_0000324|EFO_0000513 #> KO_BDNF_48h_5 EFO_0000635|EFO_0000727|EFO_0000513|EFO_0000324|EFO_0000513 #> WT_BDNF_24h_5 EFO_0000635|EFO_0000727|EFO_0000513|EFO_0000324|EFO_0000513 #> WT_BDNF_48h_2 EFO_0000635|EFO_0000727|EFO_0000513|EFO_0000324|EFO_0000513 #> WT_BDNF_24h_1 EFO_0000635|EFO_0000727|EFO_0000513|EFO_0000324|EFO_0000513 #> WT_BDNF_24h_3 EFO_0000635|EFO_0000727|EFO_0000513|EFO_0000324|EFO_0000513 #> KO_basal_1 EFO_0000635|EFO_0000727|EFO_0000513|EFO_0000324|EFO_0000513 #> KO_basal_3 EFO_0000635|EFO_0000727|EFO_0000513|EFO_0000324|EFO_0000513 #> WT_BDNF_48h_3 EFO_0000635|EFO_0000727|EFO_0000513|EFO_0000324|EFO_0000513 #> WT_BDNF_24h_4 EFO_0000635|EFO_0000727|EFO_0000513|EFO_0000324|EFO_0000513 #> WT_BDNF_48h_5 EFO_0000635|EFO_0000727|EFO_0000513|EFO_0000324|EFO_0000513 #> KO_BDNF_48h_1 EFO_0000635|EFO_0000727|EFO_0000513|EFO_0000324|EFO_0000513 #> KO_BDNF_24h_1 EFO_0000635|EFO_0000727|EFO_0000513|EFO_0000324|EFO_0000513 #> KO_BDNF_24h_3 EFO_0000635|EFO_0000727|EFO_0000513|EFO_0000324|EFO_0000513 #> WT_basal_2 EFO_0000635|EFO_0000727|EFO_0000513|EFO_0000324|EFO_0000513 #> KO_BDNF_48h_3 EFO_0000635|EFO_0000727|EFO_0000513|EFO_0000324|EFO_0000513 #> KO_BDNF_48h_4 EFO_0000635|EFO_0000727|EFO_0000513|EFO_0000324|EFO_0000513 #> WT_BDNF_48h_1 EFO_0000635|EFO_0000727|EFO_0000513|EFO_0000324|EFO_0000513 #> WT_basal_5 EFO_0000635|EFO_0000727|EFO_0000513|EFO_0000324|EFO_0000513 #> KO_basal_2 EFO_0000635|EFO_0000727|EFO_0000513|EFO_0000324|EFO_0000513 #> WT_BDNF_24h_2 EFO_0000635|EFO_0000727|EFO_0000513|EFO_0000324|EFO_0000513 #> KO_basal_4 EFO_0000635|EFO_0000727|EFO_0000513|EFO_0000324|EFO_0000513 #> KO_basal_5 EFO_0000635|EFO_0000727|EFO_0000513|EFO_0000324|EFO_0000513 #> WT_BDNF_48h_4 EFO_0000635|EFO_0000727|EFO_0000513|EFO_0000324|EFO_0000513 #> KO_BDNF_24h_5 EFO_0000635|EFO_0000727|EFO_0000513|EFO_0000324|EFO_0000513 #> KO_BDNF_48h_2 EFO_0000635|EFO_0000727|EFO_0000513|EFO_0000324|EFO_0000513 #> KO_BDNF_24h_2 EFO_0000635|EFO_0000727|EFO_0000513|EFO_0000324|EFO_0000513 #> WT_basal_1 EFO_0000635|EFO_0000727|EFO_0000513|EFO_0000324|EFO_0000513 #> KO_BDNF_24h_4 EFO_0000635|EFO_0000727|EFO_0000513|EFO_0000324|EFO_0000513 #> WT_basal_3 EFO_0000635|EFO_0000727|EFO_0000513|EFO_0000324|EFO_0000513 #> experimentAnnotClassURI #> WT_basal_4 http://www.ebi.ac.uk/efo/EFO_0000635|http://www.ebi.ac.uk/efo/EFO_0000727|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000324|http://www.ebi.ac.uk/efo/EFO_0000513 #> KO_BDNF_48h_5 http://www.ebi.ac.uk/efo/EFO_0000635|http://www.ebi.ac.uk/efo/EFO_0000727|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000324|http://www.ebi.ac.uk/efo/EFO_0000513 #> WT_BDNF_24h_5 http://www.ebi.ac.uk/efo/EFO_0000635|http://www.ebi.ac.uk/efo/EFO_0000727|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000324|http://www.ebi.ac.uk/efo/EFO_0000513 #> WT_BDNF_48h_2 http://www.ebi.ac.uk/efo/EFO_0000635|http://www.ebi.ac.uk/efo/EFO_0000727|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000324|http://www.ebi.ac.uk/efo/EFO_0000513 #> WT_BDNF_24h_1 http://www.ebi.ac.uk/efo/EFO_0000635|http://www.ebi.ac.uk/efo/EFO_0000727|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000324|http://www.ebi.ac.uk/efo/EFO_0000513 #> WT_BDNF_24h_3 http://www.ebi.ac.uk/efo/EFO_0000635|http://www.ebi.ac.uk/efo/EFO_0000727|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000324|http://www.ebi.ac.uk/efo/EFO_0000513 #> KO_basal_1 http://www.ebi.ac.uk/efo/EFO_0000635|http://www.ebi.ac.uk/efo/EFO_0000727|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000324|http://www.ebi.ac.uk/efo/EFO_0000513 #> KO_basal_3 http://www.ebi.ac.uk/efo/EFO_0000635|http://www.ebi.ac.uk/efo/EFO_0000727|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000324|http://www.ebi.ac.uk/efo/EFO_0000513 #> WT_BDNF_48h_3 http://www.ebi.ac.uk/efo/EFO_0000635|http://www.ebi.ac.uk/efo/EFO_0000727|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000324|http://www.ebi.ac.uk/efo/EFO_0000513 #> WT_BDNF_24h_4 http://www.ebi.ac.uk/efo/EFO_0000635|http://www.ebi.ac.uk/efo/EFO_0000727|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000324|http://www.ebi.ac.uk/efo/EFO_0000513 #> WT_BDNF_48h_5 http://www.ebi.ac.uk/efo/EFO_0000635|http://www.ebi.ac.uk/efo/EFO_0000727|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000324|http://www.ebi.ac.uk/efo/EFO_0000513 #> KO_BDNF_48h_1 http://www.ebi.ac.uk/efo/EFO_0000635|http://www.ebi.ac.uk/efo/EFO_0000727|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000324|http://www.ebi.ac.uk/efo/EFO_0000513 #> KO_BDNF_24h_1 http://www.ebi.ac.uk/efo/EFO_0000635|http://www.ebi.ac.uk/efo/EFO_0000727|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000324|http://www.ebi.ac.uk/efo/EFO_0000513 #> KO_BDNF_24h_3 http://www.ebi.ac.uk/efo/EFO_0000635|http://www.ebi.ac.uk/efo/EFO_0000727|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000324|http://www.ebi.ac.uk/efo/EFO_0000513 #> WT_basal_2 http://www.ebi.ac.uk/efo/EFO_0000635|http://www.ebi.ac.uk/efo/EFO_0000727|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000324|http://www.ebi.ac.uk/efo/EFO_0000513 #> KO_BDNF_48h_3 http://www.ebi.ac.uk/efo/EFO_0000635|http://www.ebi.ac.uk/efo/EFO_0000727|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000324|http://www.ebi.ac.uk/efo/EFO_0000513 #> KO_BDNF_48h_4 http://www.ebi.ac.uk/efo/EFO_0000635|http://www.ebi.ac.uk/efo/EFO_0000727|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000324|http://www.ebi.ac.uk/efo/EFO_0000513 #> WT_BDNF_48h_1 http://www.ebi.ac.uk/efo/EFO_0000635|http://www.ebi.ac.uk/efo/EFO_0000727|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000324|http://www.ebi.ac.uk/efo/EFO_0000513 #> WT_basal_5 http://www.ebi.ac.uk/efo/EFO_0000635|http://www.ebi.ac.uk/efo/EFO_0000727|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000324|http://www.ebi.ac.uk/efo/EFO_0000513 #> KO_basal_2 http://www.ebi.ac.uk/efo/EFO_0000635|http://www.ebi.ac.uk/efo/EFO_0000727|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000324|http://www.ebi.ac.uk/efo/EFO_0000513 #> WT_BDNF_24h_2 http://www.ebi.ac.uk/efo/EFO_0000635|http://www.ebi.ac.uk/efo/EFO_0000727|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000324|http://www.ebi.ac.uk/efo/EFO_0000513 #> KO_basal_4 http://www.ebi.ac.uk/efo/EFO_0000635|http://www.ebi.ac.uk/efo/EFO_0000727|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000324|http://www.ebi.ac.uk/efo/EFO_0000513 #> KO_basal_5 http://www.ebi.ac.uk/efo/EFO_0000635|http://www.ebi.ac.uk/efo/EFO_0000727|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000324|http://www.ebi.ac.uk/efo/EFO_0000513 #> WT_BDNF_48h_4 http://www.ebi.ac.uk/efo/EFO_0000635|http://www.ebi.ac.uk/efo/EFO_0000727|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000324|http://www.ebi.ac.uk/efo/EFO_0000513 #> KO_BDNF_24h_5 http://www.ebi.ac.uk/efo/EFO_0000635|http://www.ebi.ac.uk/efo/EFO_0000727|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000324|http://www.ebi.ac.uk/efo/EFO_0000513 #> KO_BDNF_48h_2 http://www.ebi.ac.uk/efo/EFO_0000635|http://www.ebi.ac.uk/efo/EFO_0000727|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000324|http://www.ebi.ac.uk/efo/EFO_0000513 #> KO_BDNF_24h_2 http://www.ebi.ac.uk/efo/EFO_0000635|http://www.ebi.ac.uk/efo/EFO_0000727|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000324|http://www.ebi.ac.uk/efo/EFO_0000513 #> WT_basal_1 http://www.ebi.ac.uk/efo/EFO_0000635|http://www.ebi.ac.uk/efo/EFO_0000727|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000324|http://www.ebi.ac.uk/efo/EFO_0000513 #> KO_BDNF_24h_4 http://www.ebi.ac.uk/efo/EFO_0000635|http://www.ebi.ac.uk/efo/EFO_0000727|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000324|http://www.ebi.ac.uk/efo/EFO_0000513 #> WT_basal_3 http://www.ebi.ac.uk/efo/EFO_0000635|http://www.ebi.ac.uk/efo/EFO_0000727|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000324|http://www.ebi.ac.uk/efo/EFO_0000513 #> experimentAnnotation #> WT_basal_4 telencephalon|Bdnf [mouse] brain derived neurotrophic factor|Xbp1 [mouse] X-box binding protein 1|neuron|Homozygous negative #> KO_BDNF_48h_5 telencephalon|Bdnf [mouse] brain derived neurotrophic factor|Xbp1 [mouse] X-box binding protein 1|neuron|Homozygous negative #> WT_BDNF_24h_5 telencephalon|Bdnf [mouse] brain derived neurotrophic factor|Xbp1 [mouse] X-box binding protein 1|neuron|Homozygous negative #> WT_BDNF_48h_2 telencephalon|Bdnf [mouse] brain derived neurotrophic factor|Xbp1 [mouse] X-box binding protein 1|neuron|Homozygous negative #> WT_BDNF_24h_1 telencephalon|Bdnf [mouse] brain derived neurotrophic factor|Xbp1 [mouse] X-box binding protein 1|neuron|Homozygous negative #> WT_BDNF_24h_3 telencephalon|Bdnf [mouse] brain derived neurotrophic factor|Xbp1 [mouse] X-box binding protein 1|neuron|Homozygous negative #> KO_basal_1 telencephalon|Bdnf [mouse] brain derived neurotrophic factor|Xbp1 [mouse] X-box binding protein 1|neuron|Homozygous negative #> KO_basal_3 telencephalon|Bdnf [mouse] brain derived neurotrophic factor|Xbp1 [mouse] X-box binding protein 1|neuron|Homozygous negative #> WT_BDNF_48h_3 telencephalon|Bdnf [mouse] brain derived neurotrophic factor|Xbp1 [mouse] X-box binding protein 1|neuron|Homozygous negative #> WT_BDNF_24h_4 telencephalon|Bdnf [mouse] brain derived neurotrophic factor|Xbp1 [mouse] X-box binding protein 1|neuron|Homozygous negative #> WT_BDNF_48h_5 telencephalon|Bdnf [mouse] brain derived neurotrophic factor|Xbp1 [mouse] X-box binding protein 1|neuron|Homozygous negative #> KO_BDNF_48h_1 telencephalon|Bdnf [mouse] brain derived neurotrophic factor|Xbp1 [mouse] X-box binding protein 1|neuron|Homozygous negative #> KO_BDNF_24h_1 telencephalon|Bdnf [mouse] brain derived neurotrophic factor|Xbp1 [mouse] X-box binding protein 1|neuron|Homozygous negative #> KO_BDNF_24h_3 telencephalon|Bdnf [mouse] brain derived neurotrophic factor|Xbp1 [mouse] X-box binding protein 1|neuron|Homozygous negative #> WT_basal_2 telencephalon|Bdnf [mouse] brain derived neurotrophic factor|Xbp1 [mouse] X-box binding protein 1|neuron|Homozygous negative #> KO_BDNF_48h_3 telencephalon|Bdnf [mouse] brain derived neurotrophic factor|Xbp1 [mouse] X-box binding protein 1|neuron|Homozygous negative #> KO_BDNF_48h_4 telencephalon|Bdnf [mouse] brain derived neurotrophic factor|Xbp1 [mouse] X-box binding protein 1|neuron|Homozygous negative #> WT_BDNF_48h_1 telencephalon|Bdnf [mouse] brain derived neurotrophic factor|Xbp1 [mouse] X-box binding protein 1|neuron|Homozygous negative #> WT_basal_5 telencephalon|Bdnf [mouse] brain derived neurotrophic factor|Xbp1 [mouse] X-box binding protein 1|neuron|Homozygous negative #> KO_basal_2 telencephalon|Bdnf [mouse] brain derived neurotrophic factor|Xbp1 [mouse] X-box binding protein 1|neuron|Homozygous negative #> WT_BDNF_24h_2 telencephalon|Bdnf [mouse] brain derived neurotrophic factor|Xbp1 [mouse] X-box binding protein 1|neuron|Homozygous negative #> KO_basal_4 telencephalon|Bdnf [mouse] brain derived neurotrophic factor|Xbp1 [mouse] X-box binding protein 1|neuron|Homozygous negative #> KO_basal_5 telencephalon|Bdnf [mouse] brain derived neurotrophic factor|Xbp1 [mouse] X-box binding protein 1|neuron|Homozygous negative #> WT_BDNF_48h_4 telencephalon|Bdnf [mouse] brain derived neurotrophic factor|Xbp1 [mouse] X-box binding protein 1|neuron|Homozygous negative #> KO_BDNF_24h_5 telencephalon|Bdnf [mouse] brain derived neurotrophic factor|Xbp1 [mouse] X-box binding protein 1|neuron|Homozygous negative #> KO_BDNF_48h_2 telencephalon|Bdnf [mouse] brain derived neurotrophic factor|Xbp1 [mouse] X-box binding protein 1|neuron|Homozygous negative #> KO_BDNF_24h_2 telencephalon|Bdnf [mouse] brain derived neurotrophic factor|Xbp1 [mouse] X-box binding protein 1|neuron|Homozygous negative #> WT_basal_1 telencephalon|Bdnf [mouse] brain derived neurotrophic factor|Xbp1 [mouse] X-box binding protein 1|neuron|Homozygous negative #> KO_BDNF_24h_4 telencephalon|Bdnf [mouse] brain derived neurotrophic factor|Xbp1 [mouse] X-box binding protein 1|neuron|Homozygous negative #> WT_basal_3 telencephalon|Bdnf [mouse] brain derived neurotrophic factor|Xbp1 [mouse] X-box binding protein 1|neuron|Homozygous negative #> experimentAnnotationOntoID #> WT_basal_4 UBERON_0001893|GENE_12064|GENE_22433|CL_0000540|TGEMO_00001 #> KO_BDNF_48h_5 UBERON_0001893|GENE_12064|GENE_22433|CL_0000540|TGEMO_00001 #> WT_BDNF_24h_5 UBERON_0001893|GENE_12064|GENE_22433|CL_0000540|TGEMO_00001 #> WT_BDNF_48h_2 UBERON_0001893|GENE_12064|GENE_22433|CL_0000540|TGEMO_00001 #> WT_BDNF_24h_1 UBERON_0001893|GENE_12064|GENE_22433|CL_0000540|TGEMO_00001 #> WT_BDNF_24h_3 UBERON_0001893|GENE_12064|GENE_22433|CL_0000540|TGEMO_00001 #> KO_basal_1 UBERON_0001893|GENE_12064|GENE_22433|CL_0000540|TGEMO_00001 #> KO_basal_3 UBERON_0001893|GENE_12064|GENE_22433|CL_0000540|TGEMO_00001 #> WT_BDNF_48h_3 UBERON_0001893|GENE_12064|GENE_22433|CL_0000540|TGEMO_00001 #> WT_BDNF_24h_4 UBERON_0001893|GENE_12064|GENE_22433|CL_0000540|TGEMO_00001 #> WT_BDNF_48h_5 UBERON_0001893|GENE_12064|GENE_22433|CL_0000540|TGEMO_00001 #> KO_BDNF_48h_1 UBERON_0001893|GENE_12064|GENE_22433|CL_0000540|TGEMO_00001 #> KO_BDNF_24h_1 UBERON_0001893|GENE_12064|GENE_22433|CL_0000540|TGEMO_00001 #> KO_BDNF_24h_3 UBERON_0001893|GENE_12064|GENE_22433|CL_0000540|TGEMO_00001 #> WT_basal_2 UBERON_0001893|GENE_12064|GENE_22433|CL_0000540|TGEMO_00001 #> KO_BDNF_48h_3 UBERON_0001893|GENE_12064|GENE_22433|CL_0000540|TGEMO_00001 #> KO_BDNF_48h_4 UBERON_0001893|GENE_12064|GENE_22433|CL_0000540|TGEMO_00001 #> WT_BDNF_48h_1 UBERON_0001893|GENE_12064|GENE_22433|CL_0000540|TGEMO_00001 #> WT_basal_5 UBERON_0001893|GENE_12064|GENE_22433|CL_0000540|TGEMO_00001 #> KO_basal_2 UBERON_0001893|GENE_12064|GENE_22433|CL_0000540|TGEMO_00001 #> WT_BDNF_24h_2 UBERON_0001893|GENE_12064|GENE_22433|CL_0000540|TGEMO_00001 #> KO_basal_4 UBERON_0001893|GENE_12064|GENE_22433|CL_0000540|TGEMO_00001 #> KO_basal_5 UBERON_0001893|GENE_12064|GENE_22433|CL_0000540|TGEMO_00001 #> WT_BDNF_48h_4 UBERON_0001893|GENE_12064|GENE_22433|CL_0000540|TGEMO_00001 #> KO_BDNF_24h_5 UBERON_0001893|GENE_12064|GENE_22433|CL_0000540|TGEMO_00001 #> KO_BDNF_48h_2 UBERON_0001893|GENE_12064|GENE_22433|CL_0000540|TGEMO_00001 #> KO_BDNF_24h_2 UBERON_0001893|GENE_12064|GENE_22433|CL_0000540|TGEMO_00001 #> WT_basal_1 UBERON_0001893|GENE_12064|GENE_22433|CL_0000540|TGEMO_00001 #> KO_BDNF_24h_4 UBERON_0001893|GENE_12064|GENE_22433|CL_0000540|TGEMO_00001 #> WT_basal_3 UBERON_0001893|GENE_12064|GENE_22433|CL_0000540|TGEMO_00001 #> experimentAnnotationURI #> WT_basal_4 http://purl.obolibrary.org/obo/UBERON_0001893|http://purl.org/commons/record/ncbi_gene/12064|http://purl.org/commons/record/ncbi_gene/22433|http://purl.obolibrary.org/obo/CL_0000540|http://purl.obolibrary.org/obo/TGEMO_00001 #> KO_BDNF_48h_5 http://purl.obolibrary.org/obo/UBERON_0001893|http://purl.org/commons/record/ncbi_gene/12064|http://purl.org/commons/record/ncbi_gene/22433|http://purl.obolibrary.org/obo/CL_0000540|http://purl.obolibrary.org/obo/TGEMO_00001 #> WT_BDNF_24h_5 http://purl.obolibrary.org/obo/UBERON_0001893|http://purl.org/commons/record/ncbi_gene/12064|http://purl.org/commons/record/ncbi_gene/22433|http://purl.obolibrary.org/obo/CL_0000540|http://purl.obolibrary.org/obo/TGEMO_00001 #> WT_BDNF_48h_2 http://purl.obolibrary.org/obo/UBERON_0001893|http://purl.org/commons/record/ncbi_gene/12064|http://purl.org/commons/record/ncbi_gene/22433|http://purl.obolibrary.org/obo/CL_0000540|http://purl.obolibrary.org/obo/TGEMO_00001 #> WT_BDNF_24h_1 http://purl.obolibrary.org/obo/UBERON_0001893|http://purl.org/commons/record/ncbi_gene/12064|http://purl.org/commons/record/ncbi_gene/22433|http://purl.obolibrary.org/obo/CL_0000540|http://purl.obolibrary.org/obo/TGEMO_00001 #> WT_BDNF_24h_3 http://purl.obolibrary.org/obo/UBERON_0001893|http://purl.org/commons/record/ncbi_gene/12064|http://purl.org/commons/record/ncbi_gene/22433|http://purl.obolibrary.org/obo/CL_0000540|http://purl.obolibrary.org/obo/TGEMO_00001 #> KO_basal_1 http://purl.obolibrary.org/obo/UBERON_0001893|http://purl.org/commons/record/ncbi_gene/12064|http://purl.org/commons/record/ncbi_gene/22433|http://purl.obolibrary.org/obo/CL_0000540|http://purl.obolibrary.org/obo/TGEMO_00001 #> KO_basal_3 http://purl.obolibrary.org/obo/UBERON_0001893|http://purl.org/commons/record/ncbi_gene/12064|http://purl.org/commons/record/ncbi_gene/22433|http://purl.obolibrary.org/obo/CL_0000540|http://purl.obolibrary.org/obo/TGEMO_00001 #> WT_BDNF_48h_3 http://purl.obolibrary.org/obo/UBERON_0001893|http://purl.org/commons/record/ncbi_gene/12064|http://purl.org/commons/record/ncbi_gene/22433|http://purl.obolibrary.org/obo/CL_0000540|http://purl.obolibrary.org/obo/TGEMO_00001 #> WT_BDNF_24h_4 http://purl.obolibrary.org/obo/UBERON_0001893|http://purl.org/commons/record/ncbi_gene/12064|http://purl.org/commons/record/ncbi_gene/22433|http://purl.obolibrary.org/obo/CL_0000540|http://purl.obolibrary.org/obo/TGEMO_00001 #> WT_BDNF_48h_5 http://purl.obolibrary.org/obo/UBERON_0001893|http://purl.org/commons/record/ncbi_gene/12064|http://purl.org/commons/record/ncbi_gene/22433|http://purl.obolibrary.org/obo/CL_0000540|http://purl.obolibrary.org/obo/TGEMO_00001 #> KO_BDNF_48h_1 http://purl.obolibrary.org/obo/UBERON_0001893|http://purl.org/commons/record/ncbi_gene/12064|http://purl.org/commons/record/ncbi_gene/22433|http://purl.obolibrary.org/obo/CL_0000540|http://purl.obolibrary.org/obo/TGEMO_00001 #> KO_BDNF_24h_1 http://purl.obolibrary.org/obo/UBERON_0001893|http://purl.org/commons/record/ncbi_gene/12064|http://purl.org/commons/record/ncbi_gene/22433|http://purl.obolibrary.org/obo/CL_0000540|http://purl.obolibrary.org/obo/TGEMO_00001 #> KO_BDNF_24h_3 http://purl.obolibrary.org/obo/UBERON_0001893|http://purl.org/commons/record/ncbi_gene/12064|http://purl.org/commons/record/ncbi_gene/22433|http://purl.obolibrary.org/obo/CL_0000540|http://purl.obolibrary.org/obo/TGEMO_00001 #> WT_basal_2 http://purl.obolibrary.org/obo/UBERON_0001893|http://purl.org/commons/record/ncbi_gene/12064|http://purl.org/commons/record/ncbi_gene/22433|http://purl.obolibrary.org/obo/CL_0000540|http://purl.obolibrary.org/obo/TGEMO_00001 #> KO_BDNF_48h_3 http://purl.obolibrary.org/obo/UBERON_0001893|http://purl.org/commons/record/ncbi_gene/12064|http://purl.org/commons/record/ncbi_gene/22433|http://purl.obolibrary.org/obo/CL_0000540|http://purl.obolibrary.org/obo/TGEMO_00001 #> KO_BDNF_48h_4 http://purl.obolibrary.org/obo/UBERON_0001893|http://purl.org/commons/record/ncbi_gene/12064|http://purl.org/commons/record/ncbi_gene/22433|http://purl.obolibrary.org/obo/CL_0000540|http://purl.obolibrary.org/obo/TGEMO_00001 #> WT_BDNF_48h_1 http://purl.obolibrary.org/obo/UBERON_0001893|http://purl.org/commons/record/ncbi_gene/12064|http://purl.org/commons/record/ncbi_gene/22433|http://purl.obolibrary.org/obo/CL_0000540|http://purl.obolibrary.org/obo/TGEMO_00001 #> WT_basal_5 http://purl.obolibrary.org/obo/UBERON_0001893|http://purl.org/commons/record/ncbi_gene/12064|http://purl.org/commons/record/ncbi_gene/22433|http://purl.obolibrary.org/obo/CL_0000540|http://purl.obolibrary.org/obo/TGEMO_00001 #> KO_basal_2 http://purl.obolibrary.org/obo/UBERON_0001893|http://purl.org/commons/record/ncbi_gene/12064|http://purl.org/commons/record/ncbi_gene/22433|http://purl.obolibrary.org/obo/CL_0000540|http://purl.obolibrary.org/obo/TGEMO_00001 #> WT_BDNF_24h_2 http://purl.obolibrary.org/obo/UBERON_0001893|http://purl.org/commons/record/ncbi_gene/12064|http://purl.org/commons/record/ncbi_gene/22433|http://purl.obolibrary.org/obo/CL_0000540|http://purl.obolibrary.org/obo/TGEMO_00001 #> KO_basal_4 http://purl.obolibrary.org/obo/UBERON_0001893|http://purl.org/commons/record/ncbi_gene/12064|http://purl.org/commons/record/ncbi_gene/22433|http://purl.obolibrary.org/obo/CL_0000540|http://purl.obolibrary.org/obo/TGEMO_00001 #> KO_basal_5 http://purl.obolibrary.org/obo/UBERON_0001893|http://purl.org/commons/record/ncbi_gene/12064|http://purl.org/commons/record/ncbi_gene/22433|http://purl.obolibrary.org/obo/CL_0000540|http://purl.obolibrary.org/obo/TGEMO_00001 #> WT_BDNF_48h_4 http://purl.obolibrary.org/obo/UBERON_0001893|http://purl.org/commons/record/ncbi_gene/12064|http://purl.org/commons/record/ncbi_gene/22433|http://purl.obolibrary.org/obo/CL_0000540|http://purl.obolibrary.org/obo/TGEMO_00001 #> KO_BDNF_24h_5 http://purl.obolibrary.org/obo/UBERON_0001893|http://purl.org/commons/record/ncbi_gene/12064|http://purl.org/commons/record/ncbi_gene/22433|http://purl.obolibrary.org/obo/CL_0000540|http://purl.obolibrary.org/obo/TGEMO_00001 #> KO_BDNF_48h_2 http://purl.obolibrary.org/obo/UBERON_0001893|http://purl.org/commons/record/ncbi_gene/12064|http://purl.org/commons/record/ncbi_gene/22433|http://purl.obolibrary.org/obo/CL_0000540|http://purl.obolibrary.org/obo/TGEMO_00001 #> KO_BDNF_24h_2 http://purl.obolibrary.org/obo/UBERON_0001893|http://purl.org/commons/record/ncbi_gene/12064|http://purl.org/commons/record/ncbi_gene/22433|http://purl.obolibrary.org/obo/CL_0000540|http://purl.obolibrary.org/obo/TGEMO_00001 #> WT_basal_1 http://purl.obolibrary.org/obo/UBERON_0001893|http://purl.org/commons/record/ncbi_gene/12064|http://purl.org/commons/record/ncbi_gene/22433|http://purl.obolibrary.org/obo/CL_0000540|http://purl.obolibrary.org/obo/TGEMO_00001 #> KO_BDNF_24h_4 http://purl.obolibrary.org/obo/UBERON_0001893|http://purl.org/commons/record/ncbi_gene/12064|http://purl.org/commons/record/ncbi_gene/22433|http://purl.obolibrary.org/obo/CL_0000540|http://purl.obolibrary.org/obo/TGEMO_00001 #> WT_basal_3 http://purl.obolibrary.org/obo/UBERON_0001893|http://purl.org/commons/record/ncbi_gene/12064|http://purl.org/commons/record/ncbi_gene/22433|http://purl.obolibrary.org/obo/CL_0000540|http://purl.obolibrary.org/obo/TGEMO_00001 #> platformName technologyType externalDatabase troubled #> WT_basal_4 GPL339 ONECOLOR GEO FALSE #> KO_BDNF_48h_5 GPL339 ONECOLOR GEO FALSE #> WT_BDNF_24h_5 GPL339 ONECOLOR GEO FALSE #> WT_BDNF_48h_2 GPL339 ONECOLOR GEO FALSE #> WT_BDNF_24h_1 GPL339 ONECOLOR GEO FALSE #> WT_BDNF_24h_3 GPL339 ONECOLOR GEO FALSE #> KO_basal_1 GPL339 ONECOLOR GEO FALSE #> KO_basal_3 GPL339 ONECOLOR GEO FALSE #> WT_BDNF_48h_3 GPL339 ONECOLOR GEO FALSE #> WT_BDNF_24h_4 GPL339 ONECOLOR GEO FALSE #> WT_BDNF_48h_5 GPL339 ONECOLOR GEO FALSE #> KO_BDNF_48h_1 GPL339 ONECOLOR GEO FALSE #> KO_BDNF_24h_1 GPL339 ONECOLOR GEO FALSE #> KO_BDNF_24h_3 GPL339 ONECOLOR GEO FALSE #> WT_basal_2 GPL339 ONECOLOR GEO FALSE #> KO_BDNF_48h_3 GPL339 ONECOLOR GEO FALSE #> KO_BDNF_48h_4 GPL339 ONECOLOR GEO FALSE #> WT_BDNF_48h_1 GPL339 ONECOLOR GEO FALSE #> WT_basal_5 GPL339 ONECOLOR GEO FALSE #> KO_basal_2 GPL339 ONECOLOR GEO FALSE #> WT_BDNF_24h_2 GPL339 ONECOLOR GEO FALSE #> KO_basal_4 GPL339 ONECOLOR GEO FALSE #> KO_basal_5 GPL339 ONECOLOR GEO FALSE #> WT_BDNF_48h_4 GPL339 ONECOLOR GEO FALSE #> KO_BDNF_24h_5 GPL339 ONECOLOR GEO FALSE #> KO_BDNF_48h_2 GPL339 ONECOLOR GEO FALSE #> KO_BDNF_24h_2 GPL339 ONECOLOR GEO FALSE #> WT_basal_1 GPL339 ONECOLOR GEO FALSE #> KO_BDNF_24h_4 GPL339 ONECOLOR GEO FALSE #> WT_basal_3 GPL339 ONECOLOR GEO FALSE #> troubleDetails #> WT_basal_4 No trouble details provided. #> KO_BDNF_48h_5 No trouble details provided. #> WT_BDNF_24h_5 No trouble details provided. #> WT_BDNF_48h_2 No trouble details provided. #> WT_BDNF_24h_1 No trouble details provided. #> WT_BDNF_24h_3 No trouble details provided. #> KO_basal_1 No trouble details provided. #> KO_basal_3 No trouble details provided. #> WT_BDNF_48h_3 No trouble details provided. #> WT_BDNF_24h_4 No trouble details provided. #> WT_BDNF_48h_5 No trouble details provided. #> KO_BDNF_48h_1 No trouble details provided. #> KO_BDNF_24h_1 No trouble details provided. #> KO_BDNF_24h_3 No trouble details provided. #> WT_basal_2 No trouble details provided. #> KO_BDNF_48h_3 No trouble details provided. #> KO_BDNF_48h_4 No trouble details provided. #> WT_BDNF_48h_1 No trouble details provided. #> WT_basal_5 No trouble details provided. #> KO_basal_2 No trouble details provided. #> WT_BDNF_24h_2 No trouble details provided. #> KO_basal_4 No trouble details provided. #> KO_basal_5 No trouble details provided. #> WT_BDNF_48h_4 No trouble details provided. #> KO_BDNF_24h_5 No trouble details provided. #> KO_BDNF_48h_2 No trouble details provided. #> KO_BDNF_24h_2 No trouble details provided. #> WT_basal_1 No trouble details provided. #> KO_BDNF_24h_4 No trouble details provided. #> WT_basal_3 No trouble details provided. #> batchConfoundDescription #> WT_basal_4 Factor 'SamplingTimePoint' may be confounded with batches; p=7.5e-07 #> KO_BDNF_48h_5 Factor 'SamplingTimePoint' may be confounded with batches; p=7.5e-07 #> WT_BDNF_24h_5 Factor 'SamplingTimePoint' may be confounded with batches; p=7.5e-07 #> WT_BDNF_48h_2 Factor 'SamplingTimePoint' may be confounded with batches; p=7.5e-07 #> WT_BDNF_24h_1 Factor 'SamplingTimePoint' may be confounded with batches; p=7.5e-07 #> WT_BDNF_24h_3 Factor 'SamplingTimePoint' may be confounded with batches; p=7.5e-07 #> KO_basal_1 Factor 'SamplingTimePoint' may be confounded with batches; p=7.5e-07 #> KO_basal_3 Factor 'SamplingTimePoint' may be confounded with batches; p=7.5e-07 #> WT_BDNF_48h_3 Factor 'SamplingTimePoint' may be confounded with batches; p=7.5e-07 #> WT_BDNF_24h_4 Factor 'SamplingTimePoint' may be confounded with batches; p=7.5e-07 #> WT_BDNF_48h_5 Factor 'SamplingTimePoint' may be confounded with batches; p=7.5e-07 #> KO_BDNF_48h_1 Factor 'SamplingTimePoint' may be confounded with batches; p=7.5e-07 #> KO_BDNF_24h_1 Factor 'SamplingTimePoint' may be confounded with batches; p=7.5e-07 #> KO_BDNF_24h_3 Factor 'SamplingTimePoint' may be confounded with batches; p=7.5e-07 #> WT_basal_2 Factor 'SamplingTimePoint' may be confounded with batches; p=7.5e-07 #> KO_BDNF_48h_3 Factor 'SamplingTimePoint' may be confounded with batches; p=7.5e-07 #> KO_BDNF_48h_4 Factor 'SamplingTimePoint' may be confounded with batches; p=7.5e-07 #> WT_BDNF_48h_1 Factor 'SamplingTimePoint' may be confounded with batches; p=7.5e-07 #> WT_basal_5 Factor 'SamplingTimePoint' may be confounded with batches; p=7.5e-07 #> KO_basal_2 Factor 'SamplingTimePoint' may be confounded with batches; p=7.5e-07 #> WT_BDNF_24h_2 Factor 'SamplingTimePoint' may be confounded with batches; p=7.5e-07 #> KO_basal_4 Factor 'SamplingTimePoint' may be confounded with batches; p=7.5e-07 #> KO_basal_5 Factor 'SamplingTimePoint' may be confounded with batches; p=7.5e-07 #> WT_BDNF_48h_4 Factor 'SamplingTimePoint' may be confounded with batches; p=7.5e-07 #> KO_BDNF_24h_5 Factor 'SamplingTimePoint' may be confounded with batches; p=7.5e-07 #> KO_BDNF_48h_2 Factor 'SamplingTimePoint' may be confounded with batches; p=7.5e-07 #> KO_BDNF_24h_2 Factor 'SamplingTimePoint' may be confounded with batches; p=7.5e-07 #> WT_basal_1 Factor 'SamplingTimePoint' may be confounded with batches; p=7.5e-07 #> KO_BDNF_24h_4 Factor 'SamplingTimePoint' may be confounded with batches; p=7.5e-07 #> WT_basal_3 Factor 'SamplingTimePoint' may be confounded with batches; p=7.5e-07 #> batchEffectDescription #> WT_basal_4 This data set may have a batch artifact (PC 1), p=5.9980e-05 #> KO_BDNF_48h_5 This data set may have a batch artifact (PC 1), p=5.9980e-05 #> WT_BDNF_24h_5 This data set may have a batch artifact (PC 1), p=5.9980e-05 #> WT_BDNF_48h_2 This data set may have a batch artifact (PC 1), p=5.9980e-05 #> WT_BDNF_24h_1 This data set may have a batch artifact (PC 1), p=5.9980e-05 #> WT_BDNF_24h_3 This data set may have a batch artifact (PC 1), p=5.9980e-05 #> KO_basal_1 This data set may have a batch artifact (PC 1), p=5.9980e-05 #> KO_basal_3 This data set may have a batch artifact (PC 1), p=5.9980e-05 #> WT_BDNF_48h_3 This data set may have a batch artifact (PC 1), p=5.9980e-05 #> WT_BDNF_24h_4 This data set may have a batch artifact (PC 1), p=5.9980e-05 #> WT_BDNF_48h_5 This data set may have a batch artifact (PC 1), p=5.9980e-05 #> KO_BDNF_48h_1 This data set may have a batch artifact (PC 1), p=5.9980e-05 #> KO_BDNF_24h_1 This data set may have a batch artifact (PC 1), p=5.9980e-05 #> KO_BDNF_24h_3 This data set may have a batch artifact (PC 1), p=5.9980e-05 #> WT_basal_2 This data set may have a batch artifact (PC 1), p=5.9980e-05 #> KO_BDNF_48h_3 This data set may have a batch artifact (PC 1), p=5.9980e-05 #> KO_BDNF_48h_4 This data set may have a batch artifact (PC 1), p=5.9980e-05 #> WT_BDNF_48h_1 This data set may have a batch artifact (PC 1), p=5.9980e-05 #> WT_basal_5 This data set may have a batch artifact (PC 1), p=5.9980e-05 #> KO_basal_2 This data set may have a batch artifact (PC 1), p=5.9980e-05 #> WT_BDNF_24h_2 This data set may have a batch artifact (PC 1), p=5.9980e-05 #> KO_basal_4 This data set may have a batch artifact (PC 1), p=5.9980e-05 #> KO_basal_5 This data set may have a batch artifact (PC 1), p=5.9980e-05 #> WT_BDNF_48h_4 This data set may have a batch artifact (PC 1), p=5.9980e-05 #> KO_BDNF_24h_5 This data set may have a batch artifact (PC 1), p=5.9980e-05 #> KO_BDNF_48h_2 This data set may have a batch artifact (PC 1), p=5.9980e-05 #> KO_BDNF_24h_2 This data set may have a batch artifact (PC 1), p=5.9980e-05 #> WT_basal_1 This data set may have a batch artifact (PC 1), p=5.9980e-05 #> KO_BDNF_24h_4 This data set may have a batch artifact (PC 1), p=5.9980e-05 #> WT_basal_3 This data set may have a batch artifact (PC 1), p=5.9980e-05 #> geeq.batchConfound geeq.batchEffect geeq.batchCorrected #> WT_basal_4 -1 0 FALSE #> KO_BDNF_48h_5 -1 0 FALSE #> WT_BDNF_24h_5 -1 0 FALSE #> WT_BDNF_48h_2 -1 0 FALSE #> WT_BDNF_24h_1 -1 0 FALSE #> WT_BDNF_24h_3 -1 0 FALSE #> KO_basal_1 -1 0 FALSE #> KO_basal_3 -1 0 FALSE #> WT_BDNF_48h_3 -1 0 FALSE #> WT_BDNF_24h_4 -1 0 FALSE #> WT_BDNF_48h_5 -1 0 FALSE #> KO_BDNF_48h_1 -1 0 FALSE #> KO_BDNF_24h_1 -1 0 FALSE #> KO_BDNF_24h_3 -1 0 FALSE #> WT_basal_2 -1 0 FALSE #> KO_BDNF_48h_3 -1 0 FALSE #> KO_BDNF_48h_4 -1 0 FALSE #> WT_BDNF_48h_1 -1 0 FALSE #> WT_basal_5 -1 0 FALSE #> KO_basal_2 -1 0 FALSE #> WT_BDNF_24h_2 -1 0 FALSE #> KO_basal_4 -1 0 FALSE #> KO_basal_5 -1 0 FALSE #> WT_BDNF_48h_4 -1 0 FALSE #> KO_BDNF_24h_5 -1 0 FALSE #> KO_BDNF_48h_2 -1 0 FALSE #> KO_BDNF_24h_2 -1 0 FALSE #> WT_basal_1 -1 0 FALSE #> KO_BDNF_24h_4 -1 0 FALSE #> WT_basal_3 -1 0 FALSE #> geeq.batchInfo geeq.qualityScore geeq.suitabilityScore #> WT_basal_4 1 0.5707117 0.625 #> KO_BDNF_48h_5 1 0.5707117 0.625 #> WT_BDNF_24h_5 1 0.5707117 0.625 #> WT_BDNF_48h_2 1 0.5707117 0.625 #> WT_BDNF_24h_1 1 0.5707117 0.625 #> WT_BDNF_24h_3 1 0.5707117 0.625 #> KO_basal_1 1 0.5707117 0.625 #> KO_basal_3 1 0.5707117 0.625 #> WT_BDNF_48h_3 1 0.5707117 0.625 #> WT_BDNF_24h_4 1 0.5707117 0.625 #> WT_BDNF_48h_5 1 0.5707117 0.625 #> KO_BDNF_48h_1 1 0.5707117 0.625 #> KO_BDNF_24h_1 1 0.5707117 0.625 #> KO_BDNF_24h_3 1 0.5707117 0.625 #> WT_basal_2 1 0.5707117 0.625 #> KO_BDNF_48h_3 1 0.5707117 0.625 #> KO_BDNF_48h_4 1 0.5707117 0.625 #> WT_BDNF_48h_1 1 0.5707117 0.625 #> WT_basal_5 1 0.5707117 0.625 #> KO_basal_2 1 0.5707117 0.625 #> WT_BDNF_24h_2 1 0.5707117 0.625 #> KO_basal_4 1 0.5707117 0.625 #> KO_basal_5 1 0.5707117 0.625 #> WT_BDNF_48h_4 1 0.5707117 0.625 #> KO_BDNF_24h_5 1 0.5707117 0.625 #> KO_BDNF_48h_2 1 0.5707117 0.625 #> KO_BDNF_24h_2 1 0.5707117 0.625 #> WT_basal_1 1 0.5707117 0.625 #> KO_BDNF_24h_4 1 0.5707117 0.625 #> WT_basal_3 1 0.5707117 0.625 #> geeq.publication geeq.platformAmount geeq.platformsTechMulti #> WT_basal_4 1 1 1 #> KO_BDNF_48h_5 1 1 1 #> WT_BDNF_24h_5 1 1 1 #> WT_BDNF_48h_2 1 1 1 #> WT_BDNF_24h_1 1 1 1 #> WT_BDNF_24h_3 1 1 1 #> KO_basal_1 1 1 1 #> KO_basal_3 1 1 1 #> WT_BDNF_48h_3 1 1 1 #> WT_BDNF_24h_4 1 1 1 #> WT_BDNF_48h_5 1 1 1 #> KO_BDNF_48h_1 1 1 1 #> KO_BDNF_24h_1 1 1 1 #> KO_BDNF_24h_3 1 1 1 #> WT_basal_2 1 1 1 #> KO_BDNF_48h_3 1 1 1 #> KO_BDNF_48h_4 1 1 1 #> WT_BDNF_48h_1 1 1 1 #> WT_basal_5 1 1 1 #> KO_basal_2 1 1 1 #> WT_BDNF_24h_2 1 1 1 #> KO_basal_4 1 1 1 #> KO_basal_5 1 1 1 #> WT_BDNF_48h_4 1 1 1 #> KO_BDNF_24h_5 1 1 1 #> KO_BDNF_48h_2 1 1 1 #> KO_BDNF_24h_2 1 1 1 #> WT_basal_1 1 1 1 #> KO_BDNF_24h_4 1 1 1 #> WT_basal_3 1 1 1 #> geeq.platformPopularity geeq.avgPlatformSize geeq.sampleSize #> WT_basal_4 1 0 1 #> KO_BDNF_48h_5 1 0 1 #> WT_BDNF_24h_5 1 0 1 #> WT_BDNF_48h_2 1 0 1 #> WT_BDNF_24h_1 1 0 1 #> WT_BDNF_24h_3 1 0 1 #> KO_basal_1 1 0 1 #> KO_basal_3 1 0 1 #> WT_BDNF_48h_3 1 0 1 #> WT_BDNF_24h_4 1 0 1 #> WT_BDNF_48h_5 1 0 1 #> KO_BDNF_48h_1 1 0 1 #> KO_BDNF_24h_1 1 0 1 #> KO_BDNF_24h_3 1 0 1 #> WT_basal_2 1 0 1 #> KO_BDNF_48h_3 1 0 1 #> KO_BDNF_48h_4 1 0 1 #> WT_BDNF_48h_1 1 0 1 #> WT_basal_5 1 0 1 #> KO_basal_2 1 0 1 #> WT_BDNF_24h_2 1 0 1 #> KO_basal_4 1 0 1 #> KO_basal_5 1 0 1 #> WT_BDNF_48h_4 1 0 1 #> KO_BDNF_24h_5 1 0 1 #> KO_BDNF_48h_2 1 0 1 #> KO_BDNF_24h_2 1 0 1 #> WT_basal_1 1 0 1 #> KO_BDNF_24h_4 1 0 1 #> WT_basal_3 1 0 1 #> geeq.rawData geeq.missingValues geeq.outliers #> WT_basal_4 -1 1 1 #> KO_BDNF_48h_5 -1 1 1 #> WT_BDNF_24h_5 -1 1 1 #> WT_BDNF_48h_2 -1 1 1 #> WT_BDNF_24h_1 -1 1 1 #> WT_BDNF_24h_3 -1 1 1 #> KO_basal_1 -1 1 1 #> KO_basal_3 -1 1 1 #> WT_BDNF_48h_3 -1 1 1 #> WT_BDNF_24h_4 -1 1 1 #> WT_BDNF_48h_5 -1 1 1 #> KO_BDNF_48h_1 -1 1 1 #> KO_BDNF_24h_1 -1 1 1 #> KO_BDNF_24h_3 -1 1 1 #> WT_basal_2 -1 1 1 #> KO_BDNF_48h_3 -1 1 1 #> KO_BDNF_48h_4 -1 1 1 #> WT_BDNF_48h_1 -1 1 1 #> WT_basal_5 -1 1 1 #> KO_basal_2 -1 1 1 #> WT_BDNF_24h_2 -1 1 1 #> KO_basal_4 -1 1 1 #> KO_basal_5 -1 1 1 #> WT_BDNF_48h_4 -1 1 1 #> KO_BDNF_24h_5 -1 1 1 #> KO_BDNF_48h_2 -1 1 1 #> KO_BDNF_24h_2 -1 1 1 #> WT_basal_1 -1 1 1 #> KO_BDNF_24h_4 -1 1 1 #> WT_basal_3 -1 1 1 #> geeq.platformTechnology geeq.replicates #> WT_basal_4 1 1 #> KO_BDNF_48h_5 1 1 #> WT_BDNF_24h_5 1 1 #> WT_BDNF_48h_2 1 1 #> WT_BDNF_24h_1 1 1 #> WT_BDNF_24h_3 1 1 #> KO_basal_1 1 1 #> KO_basal_3 1 1 #> WT_BDNF_48h_3 1 1 #> WT_BDNF_24h_4 1 1 #> WT_BDNF_48h_5 1 1 #> KO_BDNF_48h_1 1 1 #> KO_BDNF_24h_1 1 1 #> KO_BDNF_24h_3 1 1 #> WT_basal_2 1 1 #> KO_BDNF_48h_3 1 1 #> KO_BDNF_48h_4 1 1 #> WT_BDNF_48h_1 1 1 #> WT_basal_5 1 1 #> KO_basal_2 1 1 #> WT_BDNF_24h_2 1 1 #> KO_basal_4 1 1 #> KO_basal_5 1 1 #> WT_BDNF_48h_4 1 1 #> KO_BDNF_24h_5 1 1 #> KO_BDNF_48h_2 1 1 #> KO_BDNF_24h_2 1 1 #> WT_basal_1 1 1 #> KO_BDNF_24h_4 1 1 #> WT_basal_3 1 1 #> geeq.medianSampleCorrelation id sampleName accession #> WT_basal_4 0.9949821 41018 WT_basal_4 GSM286000 #> KO_BDNF_48h_5 0.9949821 41007 KO_BDNF_48h_5 GSM286011 #> WT_BDNF_24h_5 0.9949821 41029 WT_BDNF_24h_5 GSM285848 #> WT_BDNF_48h_2 0.9949821 41027 WT_BDNF_48h_2 GSM285850 #> WT_BDNF_24h_1 0.9949821 41016 WT_BDNF_24h_1 GSM286002 #> WT_BDNF_24h_3 0.9949821 41014 WT_BDNF_24h_3 GSM286004 #> KO_basal_1 0.9949821 41036 KO_basal_1 GSM285796 #> KO_basal_3 0.9949821 41025 KO_basal_3 GSM285993 #> WT_BDNF_48h_3 0.9949821 41024 WT_BDNF_48h_3 GSM285994 #> WT_BDNF_24h_4 0.9949821 41013 WT_BDNF_24h_4 GSM286005 #> WT_BDNF_48h_5 0.9949821 41022 WT_BDNF_48h_5 GSM285996 #> KO_BDNF_48h_1 0.9949821 41011 KO_BDNF_48h_1 GSM286007 #> KO_BDNF_24h_1 0.9949821 41033 KO_BDNF_24h_1 GSM285841 #> KO_BDNF_24h_3 0.9949821 41031 KO_BDNF_24h_3 GSM285846 #> WT_basal_2 0.9949821 41020 WT_basal_2 GSM285998 #> KO_BDNF_48h_3 0.9949821 41009 KO_BDNF_48h_3 GSM286009 #> KO_BDNF_48h_4 0.9949821 41008 KO_BDNF_48h_4 GSM286010 #> WT_BDNF_48h_1 0.9949821 41028 WT_BDNF_48h_1 GSM285849 #> WT_basal_5 0.9949821 41017 WT_basal_5 GSM286001 #> KO_basal_2 0.9949821 41026 KO_basal_2 GSM285992 #> WT_BDNF_24h_2 0.9949821 41015 WT_BDNF_24h_2 GSM286003 #> KO_basal_4 0.9949821 41035 KO_basal_4 GSM285813 #> KO_basal_5 0.9949821 41034 KO_basal_5 GSM285832 #> WT_BDNF_48h_4 0.9949821 41023 WT_BDNF_48h_4 GSM285995 #> KO_BDNF_24h_5 0.9949821 41012 KO_BDNF_24h_5 GSM286006 #> KO_BDNF_48h_2 0.9949821 41010 KO_BDNF_48h_2 GSM286008 #> KO_BDNF_24h_2 0.9949821 41032 KO_BDNF_24h_2 GSM285844 #> WT_basal_1 0.9949821 41021 WT_basal_1 GSM285997 #> KO_BDNF_24h_4 0.9949821 41030 KO_BDNF_24h_4 GSM285847 #> WT_basal_3 0.9949821 41019 WT_basal_3 GSM285999 #> sampleBiomaterialID sampleAnnotCategory #> WT_basal_4 36144 timepoint|genotype|block #> KO_BDNF_48h_5 36133 genotype;genotype|timepoint|block #> WT_BDNF_24h_5 36155 timepoint|genotype|block #> WT_BDNF_48h_2 36153 genotype|timepoint|block #> WT_BDNF_24h_1 36142 timepoint|genotype|block #> WT_BDNF_24h_3 36140 timepoint|genotype|block #> KO_basal_1 36162 timepoint|genotype;genotype|block #> KO_basal_3 36151 timepoint|genotype;genotype|block #> WT_BDNF_48h_3 36150 genotype|timepoint|block #> WT_BDNF_24h_4 36139 timepoint|genotype|block #> WT_BDNF_48h_5 36148 genotype|timepoint|block #> KO_BDNF_48h_1 36137 genotype;genotype|timepoint|block #> KO_BDNF_24h_1 36159 timepoint|genotype;genotype|block #> KO_BDNF_24h_3 36157 timepoint|genotype;genotype|block #> WT_basal_2 36146 timepoint|genotype|block #> KO_BDNF_48h_3 36135 genotype;genotype|timepoint|block #> KO_BDNF_48h_4 36134 genotype;genotype|timepoint|block #> WT_BDNF_48h_1 36154 genotype|timepoint|block #> WT_basal_5 36143 timepoint|genotype|block #> KO_basal_2 36152 timepoint|genotype;genotype|block #> WT_BDNF_24h_2 36141 timepoint|genotype|block #> KO_basal_4 36161 timepoint|genotype;genotype|block #> KO_basal_5 36160 timepoint|genotype;genotype|block #> WT_BDNF_48h_4 36149 genotype|timepoint|block #> KO_BDNF_24h_5 36138 timepoint|genotype;genotype|block #> KO_BDNF_48h_2 36136 genotype;genotype|timepoint|block #> KO_BDNF_24h_2 36158 timepoint|genotype;genotype|block #> WT_basal_1 36147 timepoint|genotype|block #> KO_BDNF_24h_4 36156 timepoint|genotype;genotype|block #> WT_basal_3 36145 timepoint|genotype|block #> sampleAnnotCategoryOntoID #> WT_basal_4 EFO_0000724|EFO_0000513|EFO_0005067 #> KO_BDNF_48h_5 EFO_0000513;EFO_0000513|EFO_0000724|EFO_0005067 #> WT_BDNF_24h_5 EFO_0000724|EFO_0000513|EFO_0005067 #> WT_BDNF_48h_2 EFO_0000513|EFO_0000724|EFO_0005067 #> WT_BDNF_24h_1 EFO_0000724|EFO_0000513|EFO_0005067 #> WT_BDNF_24h_3 EFO_0000724|EFO_0000513|EFO_0005067 #> KO_basal_1 EFO_0000724|EFO_0000513;EFO_0000513|EFO_0005067 #> KO_basal_3 EFO_0000724|EFO_0000513;EFO_0000513|EFO_0005067 #> WT_BDNF_48h_3 EFO_0000513|EFO_0000724|EFO_0005067 #> WT_BDNF_24h_4 EFO_0000724|EFO_0000513|EFO_0005067 #> WT_BDNF_48h_5 EFO_0000513|EFO_0000724|EFO_0005067 #> KO_BDNF_48h_1 EFO_0000513;EFO_0000513|EFO_0000724|EFO_0005067 #> KO_BDNF_24h_1 EFO_0000724|EFO_0000513;EFO_0000513|EFO_0005067 #> KO_BDNF_24h_3 EFO_0000724|EFO_0000513;EFO_0000513|EFO_0005067 #> WT_basal_2 EFO_0000724|EFO_0000513|EFO_0005067 #> KO_BDNF_48h_3 EFO_0000513;EFO_0000513|EFO_0000724|EFO_0005067 #> KO_BDNF_48h_4 EFO_0000513;EFO_0000513|EFO_0000724|EFO_0005067 #> WT_BDNF_48h_1 EFO_0000513|EFO_0000724|EFO_0005067 #> WT_basal_5 EFO_0000724|EFO_0000513|EFO_0005067 #> KO_basal_2 EFO_0000724|EFO_0000513;EFO_0000513|EFO_0005067 #> WT_BDNF_24h_2 EFO_0000724|EFO_0000513|EFO_0005067 #> KO_basal_4 EFO_0000724|EFO_0000513;EFO_0000513|EFO_0005067 #> KO_basal_5 EFO_0000724|EFO_0000513;EFO_0000513|EFO_0005067 #> WT_BDNF_48h_4 EFO_0000513|EFO_0000724|EFO_0005067 #> KO_BDNF_24h_5 EFO_0000724|EFO_0000513;EFO_0000513|EFO_0005067 #> KO_BDNF_48h_2 EFO_0000513;EFO_0000513|EFO_0000724|EFO_0005067 #> KO_BDNF_24h_2 EFO_0000724|EFO_0000513;EFO_0000513|EFO_0005067 #> WT_basal_1 EFO_0000724|EFO_0000513|EFO_0005067 #> KO_BDNF_24h_4 EFO_0000724|EFO_0000513;EFO_0000513|EFO_0005067 #> WT_basal_3 EFO_0000724|EFO_0000513|EFO_0005067 #> sampleAnnotCategoryURI #> WT_basal_4 http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0005067 #> KO_BDNF_48h_5 http://www.ebi.ac.uk/efo/EFO_0000513;http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0005067 #> WT_BDNF_24h_5 http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0005067 #> WT_BDNF_48h_2 http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0005067 #> WT_BDNF_24h_1 http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0005067 #> WT_BDNF_24h_3 http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0005067 #> KO_basal_1 http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0000513;http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0005067 #> KO_basal_3 http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0000513;http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0005067 #> WT_BDNF_48h_3 http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0005067 #> WT_BDNF_24h_4 http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0005067 #> WT_BDNF_48h_5 http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0005067 #> KO_BDNF_48h_1 http://www.ebi.ac.uk/efo/EFO_0000513;http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0005067 #> KO_BDNF_24h_1 http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0000513;http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0005067 #> KO_BDNF_24h_3 http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0000513;http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0005067 #> WT_basal_2 http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0005067 #> KO_BDNF_48h_3 http://www.ebi.ac.uk/efo/EFO_0000513;http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0005067 #> KO_BDNF_48h_4 http://www.ebi.ac.uk/efo/EFO_0000513;http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0005067 #> WT_BDNF_48h_1 http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0005067 #> WT_basal_5 http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0005067 #> KO_basal_2 http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0000513;http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0005067 #> WT_BDNF_24h_2 http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0005067 #> KO_basal_4 http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0000513;http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0005067 #> KO_basal_5 http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0000513;http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0005067 #> WT_BDNF_48h_4 http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0005067 #> KO_BDNF_24h_5 http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0000513;http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0005067 #> KO_BDNF_48h_2 http://www.ebi.ac.uk/efo/EFO_0000513;http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0005067 #> KO_BDNF_24h_2 http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0000513;http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0005067 #> WT_basal_1 http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0005067 #> KO_BDNF_24h_4 http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0000513;http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0005067 #> WT_basal_3 http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0005067 #> sampleAnnotBroadCategory sampleAnnotBroadCategoryOntoID #> WT_basal_4 timepoint|genotype|block EFO_0000724|EFO_0000513|EFO_0005067 #> KO_BDNF_48h_5 genotype|timepoint|block EFO_0000513|EFO_0000724|EFO_0005067 #> WT_BDNF_24h_5 timepoint|genotype|block EFO_0000724|EFO_0000513|EFO_0005067 #> WT_BDNF_48h_2 genotype|timepoint|block EFO_0000513|EFO_0000724|EFO_0005067 #> WT_BDNF_24h_1 timepoint|genotype|block EFO_0000724|EFO_0000513|EFO_0005067 #> WT_BDNF_24h_3 timepoint|genotype|block EFO_0000724|EFO_0000513|EFO_0005067 #> KO_basal_1 timepoint|genotype|block EFO_0000724|EFO_0000513|EFO_0005067 #> KO_basal_3 timepoint|genotype|block EFO_0000724|EFO_0000513|EFO_0005067 #> WT_BDNF_48h_3 genotype|timepoint|block EFO_0000513|EFO_0000724|EFO_0005067 #> WT_BDNF_24h_4 timepoint|genotype|block EFO_0000724|EFO_0000513|EFO_0005067 #> WT_BDNF_48h_5 genotype|timepoint|block EFO_0000513|EFO_0000724|EFO_0005067 #> KO_BDNF_48h_1 genotype|timepoint|block EFO_0000513|EFO_0000724|EFO_0005067 #> KO_BDNF_24h_1 timepoint|genotype|block EFO_0000724|EFO_0000513|EFO_0005067 #> KO_BDNF_24h_3 timepoint|genotype|block EFO_0000724|EFO_0000513|EFO_0005067 #> WT_basal_2 timepoint|genotype|block EFO_0000724|EFO_0000513|EFO_0005067 #> KO_BDNF_48h_3 genotype|timepoint|block EFO_0000513|EFO_0000724|EFO_0005067 #> KO_BDNF_48h_4 genotype|timepoint|block EFO_0000513|EFO_0000724|EFO_0005067 #> WT_BDNF_48h_1 genotype|timepoint|block EFO_0000513|EFO_0000724|EFO_0005067 #> WT_basal_5 timepoint|genotype|block EFO_0000724|EFO_0000513|EFO_0005067 #> KO_basal_2 timepoint|genotype|block EFO_0000724|EFO_0000513|EFO_0005067 #> WT_BDNF_24h_2 timepoint|genotype|block EFO_0000724|EFO_0000513|EFO_0005067 #> KO_basal_4 timepoint|genotype|block EFO_0000724|EFO_0000513|EFO_0005067 #> KO_basal_5 timepoint|genotype|block EFO_0000724|EFO_0000513|EFO_0005067 #> WT_BDNF_48h_4 genotype|timepoint|block EFO_0000513|EFO_0000724|EFO_0005067 #> KO_BDNF_24h_5 timepoint|genotype|block EFO_0000724|EFO_0000513|EFO_0005067 #> KO_BDNF_48h_2 genotype|timepoint|block EFO_0000513|EFO_0000724|EFO_0005067 #> KO_BDNF_24h_2 timepoint|genotype|block EFO_0000724|EFO_0000513|EFO_0005067 #> WT_basal_1 timepoint|genotype|block EFO_0000724|EFO_0000513|EFO_0005067 #> KO_BDNF_24h_4 timepoint|genotype|block EFO_0000724|EFO_0000513|EFO_0005067 #> WT_basal_3 timepoint|genotype|block EFO_0000724|EFO_0000513|EFO_0005067 #> sampleAnnotBroadCategoryURI #> WT_basal_4 http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0005067 #> KO_BDNF_48h_5 http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0005067 #> WT_BDNF_24h_5 http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0005067 #> WT_BDNF_48h_2 http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0005067 #> WT_BDNF_24h_1 http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0005067 #> WT_BDNF_24h_3 http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0005067 #> KO_basal_1 http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0005067 #> KO_basal_3 http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0005067 #> WT_BDNF_48h_3 http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0005067 #> WT_BDNF_24h_4 http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0005067 #> WT_BDNF_48h_5 http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0005067 #> KO_BDNF_48h_1 http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0005067 #> KO_BDNF_24h_1 http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0005067 #> KO_BDNF_24h_3 http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0005067 #> WT_basal_2 http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0005067 #> KO_BDNF_48h_3 http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0005067 #> KO_BDNF_48h_4 http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0005067 #> WT_BDNF_48h_1 http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0005067 #> WT_basal_5 http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0005067 #> KO_basal_2 http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0005067 #> WT_BDNF_24h_2 http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0005067 #> KO_basal_4 http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0005067 #> KO_basal_5 http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0005067 #> WT_BDNF_48h_4 http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0005067 #> KO_BDNF_24h_5 http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0005067 #> KO_BDNF_48h_2 http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0005067 #> KO_BDNF_24h_2 http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0005067 #> WT_basal_1 http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0005067 #> KO_BDNF_24h_4 http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0005067 #> WT_basal_3 http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0005067 #> sampleAnnotation #> WT_basal_4 initial time point|wild type genotype|Batch_01_6/15/06 #> KO_BDNF_48h_5 Xbp1 [mouse] X-box binding protein 1;Homozygous negative|48 h|Batch_03_6/20/06 #> WT_BDNF_24h_5 24 h|wild type genotype|Batch_02_6/16/06 #> WT_BDNF_48h_2 wild type genotype|48 h|Batch_02_6/16/06 #> WT_BDNF_24h_1 24 h|wild type genotype|Batch_01_6/15/06 #> WT_BDNF_24h_3 24 h|wild type genotype|Batch_02_6/16/06 #> KO_basal_1 initial time point|Xbp1 [mouse] X-box binding protein 1;Homozygous negative|Batch_01_6/15/06 #> KO_basal_3 initial time point|Xbp1 [mouse] X-box binding protein 1;Homozygous negative|Batch_01_6/15/06 #> WT_BDNF_48h_3 wild type genotype|48 h|Batch_03_6/20/06 #> WT_BDNF_24h_4 24 h|wild type genotype|Batch_02_6/16/06 #> WT_BDNF_48h_5 wild type genotype|48 h|Batch_03_6/20/06 #> KO_BDNF_48h_1 Xbp1 [mouse] X-box binding protein 1;Homozygous negative|48 h|Batch_02_6/16/06 #> KO_BDNF_24h_1 24 h|Xbp1 [mouse] X-box binding protein 1;Homozygous negative|Batch_01_6/15/06 #> KO_BDNF_24h_3 24 h|Xbp1 [mouse] X-box binding protein 1;Homozygous negative|Batch_02_6/16/06 #> WT_basal_2 initial time point|wild type genotype|Batch_01_6/15/06 #> KO_BDNF_48h_3 Xbp1 [mouse] X-box binding protein 1;Homozygous negative|48 h|Batch_03_6/20/06 #> KO_BDNF_48h_4 Xbp1 [mouse] X-box binding protein 1;Homozygous negative|48 h|Batch_03_6/20/06 #> WT_BDNF_48h_1 wild type genotype|48 h|Batch_02_6/16/06 #> WT_basal_5 initial time point|wild type genotype|Batch_01_6/15/06 #> KO_basal_2 initial time point|Xbp1 [mouse] X-box binding protein 1;Homozygous negative|Batch_01_6/15/06 #> WT_BDNF_24h_2 24 h|wild type genotype|Batch_02_6/16/06 #> KO_basal_4 initial time point|Xbp1 [mouse] X-box binding protein 1;Homozygous negative|Batch_01_6/15/06 #> KO_basal_5 initial time point|Xbp1 [mouse] X-box binding protein 1;Homozygous negative|Batch_01_6/15/06 #> WT_BDNF_48h_4 wild type genotype|48 h|Batch_03_6/20/06 #> KO_BDNF_24h_5 24 h|Xbp1 [mouse] X-box binding protein 1;Homozygous negative|Batch_02_6/16/06 #> KO_BDNF_48h_2 Xbp1 [mouse] X-box binding protein 1;Homozygous negative|48 h|Batch_02_6/16/06 #> KO_BDNF_24h_2 24 h|Xbp1 [mouse] X-box binding protein 1;Homozygous negative|Batch_02_6/16/06 #> WT_basal_1 initial time point|wild type genotype|Batch_01_6/15/06 #> KO_BDNF_24h_4 24 h|Xbp1 [mouse] X-box binding protein 1;Homozygous negative|Batch_02_6/16/06 #> WT_basal_3 initial time point|wild type genotype|Batch_01_6/15/06 #> sampleAnnotationOntoID sampleAnnotType #> WT_basal_4 EFO_0004425|EFO_0005168|NA factor|factor|factor #> KO_BDNF_48h_5 GENE_22433;TGEMO_00001|NA|NA factor|factor|factor #> WT_BDNF_24h_5 NA|EFO_0005168|NA factor|factor|factor #> WT_BDNF_48h_2 EFO_0005168|NA|NA factor|factor|factor #> WT_BDNF_24h_1 NA|EFO_0005168|NA factor|factor|factor #> WT_BDNF_24h_3 NA|EFO_0005168|NA factor|factor|factor #> KO_basal_1 EFO_0004425|GENE_22433;TGEMO_00001|NA factor|factor|factor #> KO_basal_3 EFO_0004425|GENE_22433;TGEMO_00001|NA factor|factor|factor #> WT_BDNF_48h_3 EFO_0005168|NA|NA factor|factor|factor #> WT_BDNF_24h_4 NA|EFO_0005168|NA factor|factor|factor #> WT_BDNF_48h_5 EFO_0005168|NA|NA factor|factor|factor #> KO_BDNF_48h_1 GENE_22433;TGEMO_00001|NA|NA factor|factor|factor #> KO_BDNF_24h_1 NA|GENE_22433;TGEMO_00001|NA factor|factor|factor #> KO_BDNF_24h_3 NA|GENE_22433;TGEMO_00001|NA factor|factor|factor #> WT_basal_2 EFO_0004425|EFO_0005168|NA factor|factor|factor #> KO_BDNF_48h_3 GENE_22433;TGEMO_00001|NA|NA factor|factor|factor #> KO_BDNF_48h_4 GENE_22433;TGEMO_00001|NA|NA factor|factor|factor #> WT_BDNF_48h_1 EFO_0005168|NA|NA factor|factor|factor #> WT_basal_5 EFO_0004425|EFO_0005168|NA factor|factor|factor #> KO_basal_2 EFO_0004425|GENE_22433;TGEMO_00001|NA factor|factor|factor #> WT_BDNF_24h_2 NA|EFO_0005168|NA factor|factor|factor #> KO_basal_4 EFO_0004425|GENE_22433;TGEMO_00001|NA factor|factor|factor #> KO_basal_5 EFO_0004425|GENE_22433;TGEMO_00001|NA factor|factor|factor #> WT_BDNF_48h_4 EFO_0005168|NA|NA factor|factor|factor #> KO_BDNF_24h_5 NA|GENE_22433;TGEMO_00001|NA factor|factor|factor #> KO_BDNF_48h_2 GENE_22433;TGEMO_00001|NA|NA factor|factor|factor #> KO_BDNF_24h_2 NA|GENE_22433;TGEMO_00001|NA factor|factor|factor #> WT_basal_1 EFO_0004425|EFO_0005168|NA factor|factor|factor #> KO_BDNF_24h_4 NA|GENE_22433;TGEMO_00001|NA factor|factor|factor #> WT_basal_3 EFO_0004425|EFO_0005168|NA factor|factor|factor #> sampleAnnotationURI #> WT_basal_4 http://www.ebi.ac.uk/efo/EFO_0004425|http://www.ebi.ac.uk/efo/EFO_0005168|NA #> KO_BDNF_48h_5 http://purl.org/commons/record/ncbi_gene/22433;http://purl.obolibrary.org/obo/TGEMO_00001|NA|NA #> WT_BDNF_24h_5 NA|http://www.ebi.ac.uk/efo/EFO_0005168|NA #> WT_BDNF_48h_2 http://www.ebi.ac.uk/efo/EFO_0005168|NA|NA #> WT_BDNF_24h_1 NA|http://www.ebi.ac.uk/efo/EFO_0005168|NA #> WT_BDNF_24h_3 NA|http://www.ebi.ac.uk/efo/EFO_0005168|NA #> KO_basal_1 http://www.ebi.ac.uk/efo/EFO_0004425|http://purl.org/commons/record/ncbi_gene/22433;http://purl.obolibrary.org/obo/TGEMO_00001|NA #> KO_basal_3 http://www.ebi.ac.uk/efo/EFO_0004425|http://purl.org/commons/record/ncbi_gene/22433;http://purl.obolibrary.org/obo/TGEMO_00001|NA #> WT_BDNF_48h_3 http://www.ebi.ac.uk/efo/EFO_0005168|NA|NA #> WT_BDNF_24h_4 NA|http://www.ebi.ac.uk/efo/EFO_0005168|NA #> WT_BDNF_48h_5 http://www.ebi.ac.uk/efo/EFO_0005168|NA|NA #> KO_BDNF_48h_1 http://purl.org/commons/record/ncbi_gene/22433;http://purl.obolibrary.org/obo/TGEMO_00001|NA|NA #> KO_BDNF_24h_1 NA|http://purl.org/commons/record/ncbi_gene/22433;http://purl.obolibrary.org/obo/TGEMO_00001|NA #> KO_BDNF_24h_3 NA|http://purl.org/commons/record/ncbi_gene/22433;http://purl.obolibrary.org/obo/TGEMO_00001|NA #> WT_basal_2 http://www.ebi.ac.uk/efo/EFO_0004425|http://www.ebi.ac.uk/efo/EFO_0005168|NA #> KO_BDNF_48h_3 http://purl.org/commons/record/ncbi_gene/22433;http://purl.obolibrary.org/obo/TGEMO_00001|NA|NA #> KO_BDNF_48h_4 http://purl.org/commons/record/ncbi_gene/22433;http://purl.obolibrary.org/obo/TGEMO_00001|NA|NA #> WT_BDNF_48h_1 http://www.ebi.ac.uk/efo/EFO_0005168|NA|NA #> WT_basal_5 http://www.ebi.ac.uk/efo/EFO_0004425|http://www.ebi.ac.uk/efo/EFO_0005168|NA #> KO_basal_2 http://www.ebi.ac.uk/efo/EFO_0004425|http://purl.org/commons/record/ncbi_gene/22433;http://purl.obolibrary.org/obo/TGEMO_00001|NA #> WT_BDNF_24h_2 NA|http://www.ebi.ac.uk/efo/EFO_0005168|NA #> KO_basal_4 http://www.ebi.ac.uk/efo/EFO_0004425|http://purl.org/commons/record/ncbi_gene/22433;http://purl.obolibrary.org/obo/TGEMO_00001|NA #> KO_basal_5 http://www.ebi.ac.uk/efo/EFO_0004425|http://purl.org/commons/record/ncbi_gene/22433;http://purl.obolibrary.org/obo/TGEMO_00001|NA #> WT_BDNF_48h_4 http://www.ebi.ac.uk/efo/EFO_0005168|NA|NA #> KO_BDNF_24h_5 NA|http://purl.org/commons/record/ncbi_gene/22433;http://purl.obolibrary.org/obo/TGEMO_00001|NA #> KO_BDNF_48h_2 http://purl.org/commons/record/ncbi_gene/22433;http://purl.obolibrary.org/obo/TGEMO_00001|NA|NA #> KO_BDNF_24h_2 NA|http://purl.org/commons/record/ncbi_gene/22433;http://purl.obolibrary.org/obo/TGEMO_00001|NA #> WT_basal_1 http://www.ebi.ac.uk/efo/EFO_0004425|http://www.ebi.ac.uk/efo/EFO_0005168|NA #> KO_BDNF_24h_4 NA|http://purl.org/commons/record/ncbi_gene/22433;http://purl.obolibrary.org/obo/TGEMO_00001|NA #> WT_basal_3 http://www.ebi.ac.uk/efo/EFO_0004425|http://www.ebi.ac.uk/efo/EFO_0005168|NA #> otherCharacteristics #> WT_basal_4 total RNA|biotin|telencephalon primary culture|'tissue: telencephalon primary culture', 'embryonic day: E12.5' #> KO_BDNF_48h_5 total RNA|biotin|telencephalon primary culture|'tissue: telencephalon primary culture', 'embryonic day: E12.5' #> WT_BDNF_24h_5 total RNA|biotin|telencephalon primary culture|'tissue: telencephalon primary culture', 'embryonic day: E12.5' #> WT_BDNF_48h_2 total RNA|biotin|telencephalon primary culture|'tissue: telencephalon primary culture', 'embryonic day: E12.5' #> WT_BDNF_24h_1 total RNA|biotin|telencephalon primary culture|'tissue: telencephalon primary culture', 'embryonic day: E12.5' #> WT_BDNF_24h_3 total RNA|biotin|telencephalon primary culture|'tissue: telencephalon primary culture', 'embryonic day: E12.5' #> KO_basal_1 total RNA|biotin|telencephalon primary culture|'tissue: telencephalon primary culture', 'embryonic day: E12.5'. #> KO_basal_3 total RNA|biotin|telencephalon primary culture|'tissue: telencephalon primary culture', 'embryonic day: E12.5' #> WT_BDNF_48h_3 total RNA|biotin|telencephalon primary culture|'tissue: telencephalon primary culture', 'embryonic day: E12.5' #> WT_BDNF_24h_4 total RNA|biotin|telencephalon primary culture|'tissue: telencephalon primary culture', 'embryonic day: E12.5' #> WT_BDNF_48h_5 total RNA|biotin|telencephalon primary culture|'tissue: telencephalon primary culture', 'embryonic day: E12.5' #> KO_BDNF_48h_1 total RNA|biotin|telencephalon primary culture|'tissue: telencephalon primary culture', 'embryonic day: E12.5' #> KO_BDNF_24h_1 total RNA|biotin|telencephalon primary culture|'tissue: telencephalon primary culture', 'embryonic day: E12.5' #> KO_BDNF_24h_3 total RNA|biotin|telencephalon primary culture|'tissue: telencephalon primary culture', 'embryonic day: E12.5' #> WT_basal_2 total RNA|biotin|telencephalon primary culture|'tissue: telencephalon primary culture', 'embryonic day: E12.5' #> KO_BDNF_48h_3 total RNA|biotin|telencephalon primary culture|'tissue: telencephalon primary culture', 'embryonic day: E12.5' #> KO_BDNF_48h_4 total RNA|biotin|telencephalon primary culture|'tissue: telencephalon primary culture', 'embryonic day: E12.5' #> WT_BDNF_48h_1 total RNA|biotin|telencephalon primary culture|'tissue: telencephalon primary culture', 'embryonic day: E12.5' #> WT_basal_5 total RNA|biotin|telencephalon primary culture|'tissue: telencephalon primary culture', 'embryonic day: E12.5' #> KO_basal_2 total RNA|biotin|telencephalon primary culture|'tissue: telencephalon primary culture', 'embryonic day: E12.5' #> WT_BDNF_24h_2 total RNA|biotin|telencephalon primary culture|'tissue: telencephalon primary culture', 'embryonic day: E12.5' #> KO_basal_4 total RNA|biotin|telencephalon primary culture|'tissue: telencephalon primary culture', 'embryonic day: E12.5' #> KO_basal_5 total RNA|biotin|telencephalon primary culture|'tissue: telencephalon primary culture', 'embryonic day: E12.5' #> WT_BDNF_48h_4 total RNA|biotin|telencephalon primary culture|'tissue: telencephalon primary culture', 'embryonic day: E12.5' #> KO_BDNF_24h_5 total RNA|biotin|telencephalon primary culture|'tissue: telencephalon primary culture', 'embryonic day: E12.5' #> KO_BDNF_48h_2 total RNA|biotin|telencephalon primary culture|'tissue: telencephalon primary culture', 'embryonic day: E12.5' #> KO_BDNF_24h_2 total RNA|biotin|telencephalon primary culture|'tissue: telencephalon primary culture', 'embryonic day: E12.5' #> WT_basal_1 total RNA|biotin|telencephalon primary culture|'tissue: telencephalon primary culture', 'embryonic day: E12.5' #> KO_BDNF_24h_4 total RNA|biotin|telencephalon primary culture|'tissue: telencephalon primary culture', 'embryonic day: E12.5' #> WT_basal_3 total RNA|biotin|telencephalon primary culture|'tissue: telencephalon primary culture', 'embryonic day: E12.5'compileMetadata(1017)#> datasetID datasetName taxon #> WT_basal_4 1017 GSE11322 mouse #> KO_BDNF_48h_5 1017 GSE11322 mouse #> WT_BDNF_24h_5 1017 GSE11322 mouse #> WT_BDNF_48h_2 1017 GSE11322 mouse #> WT_BDNF_24h_1 1017 GSE11322 mouse #> WT_BDNF_24h_3 1017 GSE11322 mouse #> KO_basal_1 1017 GSE11322 mouse #> KO_basal_3 1017 GSE11322 mouse #> WT_BDNF_48h_3 1017 GSE11322 mouse #> WT_BDNF_24h_4 1017 GSE11322 mouse #> WT_BDNF_48h_5 1017 GSE11322 mouse #> KO_BDNF_48h_1 1017 GSE11322 mouse #> KO_BDNF_24h_1 1017 GSE11322 mouse #> KO_BDNF_24h_3 1017 GSE11322 mouse #> WT_basal_2 1017 GSE11322 mouse #> KO_BDNF_48h_3 1017 GSE11322 mouse #> KO_BDNF_48h_4 1017 GSE11322 mouse #> WT_BDNF_48h_1 1017 GSE11322 mouse #> WT_basal_5 1017 GSE11322 mouse #> KO_basal_2 1017 GSE11322 mouse #> WT_BDNF_24h_2 1017 GSE11322 mouse #> KO_basal_4 1017 GSE11322 mouse #> KO_basal_5 1017 GSE11322 mouse #> WT_BDNF_48h_4 1017 GSE11322 mouse #> KO_BDNF_24h_5 1017 GSE11322 mouse #> KO_BDNF_48h_2 1017 GSE11322 mouse #> KO_BDNF_24h_2 1017 GSE11322 mouse #> WT_basal_1 1017 GSE11322 mouse #> KO_BDNF_24h_4 1017 GSE11322 mouse #> WT_basal_3 1017 GSE11322 mouse #> experimentAnnotClass #> WT_basal_4 organism part|treatment|genotype|cell type|genotype #> KO_BDNF_48h_5 organism part|treatment|genotype|cell type|genotype #> WT_BDNF_24h_5 organism part|treatment|genotype|cell type|genotype #> WT_BDNF_48h_2 organism part|treatment|genotype|cell type|genotype #> WT_BDNF_24h_1 organism part|treatment|genotype|cell type|genotype #> WT_BDNF_24h_3 organism part|treatment|genotype|cell type|genotype #> KO_basal_1 organism part|treatment|genotype|cell type|genotype #> KO_basal_3 organism part|treatment|genotype|cell type|genotype #> WT_BDNF_48h_3 organism part|treatment|genotype|cell type|genotype #> WT_BDNF_24h_4 organism part|treatment|genotype|cell type|genotype #> WT_BDNF_48h_5 organism part|treatment|genotype|cell type|genotype #> KO_BDNF_48h_1 organism part|treatment|genotype|cell type|genotype #> KO_BDNF_24h_1 organism part|treatment|genotype|cell type|genotype #> KO_BDNF_24h_3 organism part|treatment|genotype|cell type|genotype #> WT_basal_2 organism part|treatment|genotype|cell type|genotype #> KO_BDNF_48h_3 organism part|treatment|genotype|cell type|genotype #> KO_BDNF_48h_4 organism part|treatment|genotype|cell type|genotype #> WT_BDNF_48h_1 organism part|treatment|genotype|cell type|genotype #> WT_basal_5 organism part|treatment|genotype|cell type|genotype #> KO_basal_2 organism part|treatment|genotype|cell type|genotype #> WT_BDNF_24h_2 organism part|treatment|genotype|cell type|genotype #> KO_basal_4 organism part|treatment|genotype|cell type|genotype #> KO_basal_5 organism part|treatment|genotype|cell type|genotype #> WT_BDNF_48h_4 organism part|treatment|genotype|cell type|genotype #> KO_BDNF_24h_5 organism part|treatment|genotype|cell type|genotype #> KO_BDNF_48h_2 organism part|treatment|genotype|cell type|genotype #> KO_BDNF_24h_2 organism part|treatment|genotype|cell type|genotype #> WT_basal_1 organism part|treatment|genotype|cell type|genotype #> KO_BDNF_24h_4 organism part|treatment|genotype|cell type|genotype #> WT_basal_3 organism part|treatment|genotype|cell type|genotype #> experimentAnnotClassOntoID #> WT_basal_4 EFO_0000635|EFO_0000727|EFO_0000513|EFO_0000324|EFO_0000513 #> KO_BDNF_48h_5 EFO_0000635|EFO_0000727|EFO_0000513|EFO_0000324|EFO_0000513 #> WT_BDNF_24h_5 EFO_0000635|EFO_0000727|EFO_0000513|EFO_0000324|EFO_0000513 #> WT_BDNF_48h_2 EFO_0000635|EFO_0000727|EFO_0000513|EFO_0000324|EFO_0000513 #> WT_BDNF_24h_1 EFO_0000635|EFO_0000727|EFO_0000513|EFO_0000324|EFO_0000513 #> WT_BDNF_24h_3 EFO_0000635|EFO_0000727|EFO_0000513|EFO_0000324|EFO_0000513 #> KO_basal_1 EFO_0000635|EFO_0000727|EFO_0000513|EFO_0000324|EFO_0000513 #> KO_basal_3 EFO_0000635|EFO_0000727|EFO_0000513|EFO_0000324|EFO_0000513 #> WT_BDNF_48h_3 EFO_0000635|EFO_0000727|EFO_0000513|EFO_0000324|EFO_0000513 #> WT_BDNF_24h_4 EFO_0000635|EFO_0000727|EFO_0000513|EFO_0000324|EFO_0000513 #> WT_BDNF_48h_5 EFO_0000635|EFO_0000727|EFO_0000513|EFO_0000324|EFO_0000513 #> KO_BDNF_48h_1 EFO_0000635|EFO_0000727|EFO_0000513|EFO_0000324|EFO_0000513 #> KO_BDNF_24h_1 EFO_0000635|EFO_0000727|EFO_0000513|EFO_0000324|EFO_0000513 #> KO_BDNF_24h_3 EFO_0000635|EFO_0000727|EFO_0000513|EFO_0000324|EFO_0000513 #> WT_basal_2 EFO_0000635|EFO_0000727|EFO_0000513|EFO_0000324|EFO_0000513 #> KO_BDNF_48h_3 EFO_0000635|EFO_0000727|EFO_0000513|EFO_0000324|EFO_0000513 #> KO_BDNF_48h_4 EFO_0000635|EFO_0000727|EFO_0000513|EFO_0000324|EFO_0000513 #> WT_BDNF_48h_1 EFO_0000635|EFO_0000727|EFO_0000513|EFO_0000324|EFO_0000513 #> WT_basal_5 EFO_0000635|EFO_0000727|EFO_0000513|EFO_0000324|EFO_0000513 #> KO_basal_2 EFO_0000635|EFO_0000727|EFO_0000513|EFO_0000324|EFO_0000513 #> WT_BDNF_24h_2 EFO_0000635|EFO_0000727|EFO_0000513|EFO_0000324|EFO_0000513 #> KO_basal_4 EFO_0000635|EFO_0000727|EFO_0000513|EFO_0000324|EFO_0000513 #> KO_basal_5 EFO_0000635|EFO_0000727|EFO_0000513|EFO_0000324|EFO_0000513 #> WT_BDNF_48h_4 EFO_0000635|EFO_0000727|EFO_0000513|EFO_0000324|EFO_0000513 #> KO_BDNF_24h_5 EFO_0000635|EFO_0000727|EFO_0000513|EFO_0000324|EFO_0000513 #> KO_BDNF_48h_2 EFO_0000635|EFO_0000727|EFO_0000513|EFO_0000324|EFO_0000513 #> KO_BDNF_24h_2 EFO_0000635|EFO_0000727|EFO_0000513|EFO_0000324|EFO_0000513 #> WT_basal_1 EFO_0000635|EFO_0000727|EFO_0000513|EFO_0000324|EFO_0000513 #> KO_BDNF_24h_4 EFO_0000635|EFO_0000727|EFO_0000513|EFO_0000324|EFO_0000513 #> WT_basal_3 EFO_0000635|EFO_0000727|EFO_0000513|EFO_0000324|EFO_0000513 #> experimentAnnotClassURI #> WT_basal_4 http://www.ebi.ac.uk/efo/EFO_0000635|http://www.ebi.ac.uk/efo/EFO_0000727|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000324|http://www.ebi.ac.uk/efo/EFO_0000513 #> KO_BDNF_48h_5 http://www.ebi.ac.uk/efo/EFO_0000635|http://www.ebi.ac.uk/efo/EFO_0000727|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000324|http://www.ebi.ac.uk/efo/EFO_0000513 #> WT_BDNF_24h_5 http://www.ebi.ac.uk/efo/EFO_0000635|http://www.ebi.ac.uk/efo/EFO_0000727|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000324|http://www.ebi.ac.uk/efo/EFO_0000513 #> WT_BDNF_48h_2 http://www.ebi.ac.uk/efo/EFO_0000635|http://www.ebi.ac.uk/efo/EFO_0000727|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000324|http://www.ebi.ac.uk/efo/EFO_0000513 #> WT_BDNF_24h_1 http://www.ebi.ac.uk/efo/EFO_0000635|http://www.ebi.ac.uk/efo/EFO_0000727|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000324|http://www.ebi.ac.uk/efo/EFO_0000513 #> WT_BDNF_24h_3 http://www.ebi.ac.uk/efo/EFO_0000635|http://www.ebi.ac.uk/efo/EFO_0000727|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000324|http://www.ebi.ac.uk/efo/EFO_0000513 #> KO_basal_1 http://www.ebi.ac.uk/efo/EFO_0000635|http://www.ebi.ac.uk/efo/EFO_0000727|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000324|http://www.ebi.ac.uk/efo/EFO_0000513 #> KO_basal_3 http://www.ebi.ac.uk/efo/EFO_0000635|http://www.ebi.ac.uk/efo/EFO_0000727|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000324|http://www.ebi.ac.uk/efo/EFO_0000513 #> WT_BDNF_48h_3 http://www.ebi.ac.uk/efo/EFO_0000635|http://www.ebi.ac.uk/efo/EFO_0000727|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000324|http://www.ebi.ac.uk/efo/EFO_0000513 #> WT_BDNF_24h_4 http://www.ebi.ac.uk/efo/EFO_0000635|http://www.ebi.ac.uk/efo/EFO_0000727|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000324|http://www.ebi.ac.uk/efo/EFO_0000513 #> WT_BDNF_48h_5 http://www.ebi.ac.uk/efo/EFO_0000635|http://www.ebi.ac.uk/efo/EFO_0000727|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000324|http://www.ebi.ac.uk/efo/EFO_0000513 #> KO_BDNF_48h_1 http://www.ebi.ac.uk/efo/EFO_0000635|http://www.ebi.ac.uk/efo/EFO_0000727|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000324|http://www.ebi.ac.uk/efo/EFO_0000513 #> KO_BDNF_24h_1 http://www.ebi.ac.uk/efo/EFO_0000635|http://www.ebi.ac.uk/efo/EFO_0000727|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000324|http://www.ebi.ac.uk/efo/EFO_0000513 #> KO_BDNF_24h_3 http://www.ebi.ac.uk/efo/EFO_0000635|http://www.ebi.ac.uk/efo/EFO_0000727|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000324|http://www.ebi.ac.uk/efo/EFO_0000513 #> WT_basal_2 http://www.ebi.ac.uk/efo/EFO_0000635|http://www.ebi.ac.uk/efo/EFO_0000727|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000324|http://www.ebi.ac.uk/efo/EFO_0000513 #> KO_BDNF_48h_3 http://www.ebi.ac.uk/efo/EFO_0000635|http://www.ebi.ac.uk/efo/EFO_0000727|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000324|http://www.ebi.ac.uk/efo/EFO_0000513 #> KO_BDNF_48h_4 http://www.ebi.ac.uk/efo/EFO_0000635|http://www.ebi.ac.uk/efo/EFO_0000727|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000324|http://www.ebi.ac.uk/efo/EFO_0000513 #> WT_BDNF_48h_1 http://www.ebi.ac.uk/efo/EFO_0000635|http://www.ebi.ac.uk/efo/EFO_0000727|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000324|http://www.ebi.ac.uk/efo/EFO_0000513 #> WT_basal_5 http://www.ebi.ac.uk/efo/EFO_0000635|http://www.ebi.ac.uk/efo/EFO_0000727|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000324|http://www.ebi.ac.uk/efo/EFO_0000513 #> KO_basal_2 http://www.ebi.ac.uk/efo/EFO_0000635|http://www.ebi.ac.uk/efo/EFO_0000727|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000324|http://www.ebi.ac.uk/efo/EFO_0000513 #> WT_BDNF_24h_2 http://www.ebi.ac.uk/efo/EFO_0000635|http://www.ebi.ac.uk/efo/EFO_0000727|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000324|http://www.ebi.ac.uk/efo/EFO_0000513 #> KO_basal_4 http://www.ebi.ac.uk/efo/EFO_0000635|http://www.ebi.ac.uk/efo/EFO_0000727|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000324|http://www.ebi.ac.uk/efo/EFO_0000513 #> KO_basal_5 http://www.ebi.ac.uk/efo/EFO_0000635|http://www.ebi.ac.uk/efo/EFO_0000727|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000324|http://www.ebi.ac.uk/efo/EFO_0000513 #> WT_BDNF_48h_4 http://www.ebi.ac.uk/efo/EFO_0000635|http://www.ebi.ac.uk/efo/EFO_0000727|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000324|http://www.ebi.ac.uk/efo/EFO_0000513 #> KO_BDNF_24h_5 http://www.ebi.ac.uk/efo/EFO_0000635|http://www.ebi.ac.uk/efo/EFO_0000727|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000324|http://www.ebi.ac.uk/efo/EFO_0000513 #> KO_BDNF_48h_2 http://www.ebi.ac.uk/efo/EFO_0000635|http://www.ebi.ac.uk/efo/EFO_0000727|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000324|http://www.ebi.ac.uk/efo/EFO_0000513 #> KO_BDNF_24h_2 http://www.ebi.ac.uk/efo/EFO_0000635|http://www.ebi.ac.uk/efo/EFO_0000727|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000324|http://www.ebi.ac.uk/efo/EFO_0000513 #> WT_basal_1 http://www.ebi.ac.uk/efo/EFO_0000635|http://www.ebi.ac.uk/efo/EFO_0000727|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000324|http://www.ebi.ac.uk/efo/EFO_0000513 #> KO_BDNF_24h_4 http://www.ebi.ac.uk/efo/EFO_0000635|http://www.ebi.ac.uk/efo/EFO_0000727|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000324|http://www.ebi.ac.uk/efo/EFO_0000513 #> WT_basal_3 http://www.ebi.ac.uk/efo/EFO_0000635|http://www.ebi.ac.uk/efo/EFO_0000727|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000324|http://www.ebi.ac.uk/efo/EFO_0000513 #> experimentAnnotation #> WT_basal_4 telencephalon|Bdnf [mouse] brain derived neurotrophic factor|Xbp1 [mouse] X-box binding protein 1|neuron|Homozygous negative #> KO_BDNF_48h_5 telencephalon|Bdnf [mouse] brain derived neurotrophic factor|Xbp1 [mouse] X-box binding protein 1|neuron|Homozygous negative #> WT_BDNF_24h_5 telencephalon|Bdnf [mouse] brain derived neurotrophic factor|Xbp1 [mouse] X-box binding protein 1|neuron|Homozygous negative #> WT_BDNF_48h_2 telencephalon|Bdnf [mouse] brain derived neurotrophic factor|Xbp1 [mouse] X-box binding protein 1|neuron|Homozygous negative #> WT_BDNF_24h_1 telencephalon|Bdnf [mouse] brain derived neurotrophic factor|Xbp1 [mouse] X-box binding protein 1|neuron|Homozygous negative #> WT_BDNF_24h_3 telencephalon|Bdnf [mouse] brain derived neurotrophic factor|Xbp1 [mouse] X-box binding protein 1|neuron|Homozygous negative #> KO_basal_1 telencephalon|Bdnf [mouse] brain derived neurotrophic factor|Xbp1 [mouse] X-box binding protein 1|neuron|Homozygous negative #> KO_basal_3 telencephalon|Bdnf [mouse] brain derived neurotrophic factor|Xbp1 [mouse] X-box binding protein 1|neuron|Homozygous negative #> WT_BDNF_48h_3 telencephalon|Bdnf [mouse] brain derived neurotrophic factor|Xbp1 [mouse] X-box binding protein 1|neuron|Homozygous negative #> WT_BDNF_24h_4 telencephalon|Bdnf [mouse] brain derived neurotrophic factor|Xbp1 [mouse] X-box binding protein 1|neuron|Homozygous negative #> WT_BDNF_48h_5 telencephalon|Bdnf [mouse] brain derived neurotrophic factor|Xbp1 [mouse] X-box binding protein 1|neuron|Homozygous negative #> KO_BDNF_48h_1 telencephalon|Bdnf [mouse] brain derived neurotrophic factor|Xbp1 [mouse] X-box binding protein 1|neuron|Homozygous negative #> KO_BDNF_24h_1 telencephalon|Bdnf [mouse] brain derived neurotrophic factor|Xbp1 [mouse] X-box binding protein 1|neuron|Homozygous negative #> KO_BDNF_24h_3 telencephalon|Bdnf [mouse] brain derived neurotrophic factor|Xbp1 [mouse] X-box binding protein 1|neuron|Homozygous negative #> WT_basal_2 telencephalon|Bdnf [mouse] brain derived neurotrophic factor|Xbp1 [mouse] X-box binding protein 1|neuron|Homozygous negative #> KO_BDNF_48h_3 telencephalon|Bdnf [mouse] brain derived neurotrophic factor|Xbp1 [mouse] X-box binding protein 1|neuron|Homozygous negative #> KO_BDNF_48h_4 telencephalon|Bdnf [mouse] brain derived neurotrophic factor|Xbp1 [mouse] X-box binding protein 1|neuron|Homozygous negative #> WT_BDNF_48h_1 telencephalon|Bdnf [mouse] brain derived neurotrophic factor|Xbp1 [mouse] X-box binding protein 1|neuron|Homozygous negative #> WT_basal_5 telencephalon|Bdnf [mouse] brain derived neurotrophic factor|Xbp1 [mouse] X-box binding protein 1|neuron|Homozygous negative #> KO_basal_2 telencephalon|Bdnf [mouse] brain derived neurotrophic factor|Xbp1 [mouse] X-box binding protein 1|neuron|Homozygous negative #> WT_BDNF_24h_2 telencephalon|Bdnf [mouse] brain derived neurotrophic factor|Xbp1 [mouse] X-box binding protein 1|neuron|Homozygous negative #> KO_basal_4 telencephalon|Bdnf [mouse] brain derived neurotrophic factor|Xbp1 [mouse] X-box binding protein 1|neuron|Homozygous negative #> KO_basal_5 telencephalon|Bdnf [mouse] brain derived neurotrophic factor|Xbp1 [mouse] X-box binding protein 1|neuron|Homozygous negative #> WT_BDNF_48h_4 telencephalon|Bdnf [mouse] brain derived neurotrophic factor|Xbp1 [mouse] X-box binding protein 1|neuron|Homozygous negative #> KO_BDNF_24h_5 telencephalon|Bdnf [mouse] brain derived neurotrophic factor|Xbp1 [mouse] X-box binding protein 1|neuron|Homozygous negative #> KO_BDNF_48h_2 telencephalon|Bdnf [mouse] brain derived neurotrophic factor|Xbp1 [mouse] X-box binding protein 1|neuron|Homozygous negative #> KO_BDNF_24h_2 telencephalon|Bdnf [mouse] brain derived neurotrophic factor|Xbp1 [mouse] X-box binding protein 1|neuron|Homozygous negative #> WT_basal_1 telencephalon|Bdnf [mouse] brain derived neurotrophic factor|Xbp1 [mouse] X-box binding protein 1|neuron|Homozygous negative #> KO_BDNF_24h_4 telencephalon|Bdnf [mouse] brain derived neurotrophic factor|Xbp1 [mouse] X-box binding protein 1|neuron|Homozygous negative #> WT_basal_3 telencephalon|Bdnf [mouse] brain derived neurotrophic factor|Xbp1 [mouse] X-box binding protein 1|neuron|Homozygous negative #> experimentAnnotationOntoID #> WT_basal_4 UBERON_0001893|GENE_12064|GENE_22433|CL_0000540|TGEMO_00001 #> KO_BDNF_48h_5 UBERON_0001893|GENE_12064|GENE_22433|CL_0000540|TGEMO_00001 #> WT_BDNF_24h_5 UBERON_0001893|GENE_12064|GENE_22433|CL_0000540|TGEMO_00001 #> WT_BDNF_48h_2 UBERON_0001893|GENE_12064|GENE_22433|CL_0000540|TGEMO_00001 #> WT_BDNF_24h_1 UBERON_0001893|GENE_12064|GENE_22433|CL_0000540|TGEMO_00001 #> WT_BDNF_24h_3 UBERON_0001893|GENE_12064|GENE_22433|CL_0000540|TGEMO_00001 #> KO_basal_1 UBERON_0001893|GENE_12064|GENE_22433|CL_0000540|TGEMO_00001 #> KO_basal_3 UBERON_0001893|GENE_12064|GENE_22433|CL_0000540|TGEMO_00001 #> WT_BDNF_48h_3 UBERON_0001893|GENE_12064|GENE_22433|CL_0000540|TGEMO_00001 #> WT_BDNF_24h_4 UBERON_0001893|GENE_12064|GENE_22433|CL_0000540|TGEMO_00001 #> WT_BDNF_48h_5 UBERON_0001893|GENE_12064|GENE_22433|CL_0000540|TGEMO_00001 #> KO_BDNF_48h_1 UBERON_0001893|GENE_12064|GENE_22433|CL_0000540|TGEMO_00001 #> KO_BDNF_24h_1 UBERON_0001893|GENE_12064|GENE_22433|CL_0000540|TGEMO_00001 #> KO_BDNF_24h_3 UBERON_0001893|GENE_12064|GENE_22433|CL_0000540|TGEMO_00001 #> WT_basal_2 UBERON_0001893|GENE_12064|GENE_22433|CL_0000540|TGEMO_00001 #> KO_BDNF_48h_3 UBERON_0001893|GENE_12064|GENE_22433|CL_0000540|TGEMO_00001 #> KO_BDNF_48h_4 UBERON_0001893|GENE_12064|GENE_22433|CL_0000540|TGEMO_00001 #> WT_BDNF_48h_1 UBERON_0001893|GENE_12064|GENE_22433|CL_0000540|TGEMO_00001 #> WT_basal_5 UBERON_0001893|GENE_12064|GENE_22433|CL_0000540|TGEMO_00001 #> KO_basal_2 UBERON_0001893|GENE_12064|GENE_22433|CL_0000540|TGEMO_00001 #> WT_BDNF_24h_2 UBERON_0001893|GENE_12064|GENE_22433|CL_0000540|TGEMO_00001 #> KO_basal_4 UBERON_0001893|GENE_12064|GENE_22433|CL_0000540|TGEMO_00001 #> KO_basal_5 UBERON_0001893|GENE_12064|GENE_22433|CL_0000540|TGEMO_00001 #> WT_BDNF_48h_4 UBERON_0001893|GENE_12064|GENE_22433|CL_0000540|TGEMO_00001 #> KO_BDNF_24h_5 UBERON_0001893|GENE_12064|GENE_22433|CL_0000540|TGEMO_00001 #> KO_BDNF_48h_2 UBERON_0001893|GENE_12064|GENE_22433|CL_0000540|TGEMO_00001 #> KO_BDNF_24h_2 UBERON_0001893|GENE_12064|GENE_22433|CL_0000540|TGEMO_00001 #> WT_basal_1 UBERON_0001893|GENE_12064|GENE_22433|CL_0000540|TGEMO_00001 #> KO_BDNF_24h_4 UBERON_0001893|GENE_12064|GENE_22433|CL_0000540|TGEMO_00001 #> WT_basal_3 UBERON_0001893|GENE_12064|GENE_22433|CL_0000540|TGEMO_00001 #> experimentAnnotationURI #> WT_basal_4 http://purl.obolibrary.org/obo/UBERON_0001893|http://purl.org/commons/record/ncbi_gene/12064|http://purl.org/commons/record/ncbi_gene/22433|http://purl.obolibrary.org/obo/CL_0000540|http://purl.obolibrary.org/obo/TGEMO_00001 #> KO_BDNF_48h_5 http://purl.obolibrary.org/obo/UBERON_0001893|http://purl.org/commons/record/ncbi_gene/12064|http://purl.org/commons/record/ncbi_gene/22433|http://purl.obolibrary.org/obo/CL_0000540|http://purl.obolibrary.org/obo/TGEMO_00001 #> WT_BDNF_24h_5 http://purl.obolibrary.org/obo/UBERON_0001893|http://purl.org/commons/record/ncbi_gene/12064|http://purl.org/commons/record/ncbi_gene/22433|http://purl.obolibrary.org/obo/CL_0000540|http://purl.obolibrary.org/obo/TGEMO_00001 #> WT_BDNF_48h_2 http://purl.obolibrary.org/obo/UBERON_0001893|http://purl.org/commons/record/ncbi_gene/12064|http://purl.org/commons/record/ncbi_gene/22433|http://purl.obolibrary.org/obo/CL_0000540|http://purl.obolibrary.org/obo/TGEMO_00001 #> WT_BDNF_24h_1 http://purl.obolibrary.org/obo/UBERON_0001893|http://purl.org/commons/record/ncbi_gene/12064|http://purl.org/commons/record/ncbi_gene/22433|http://purl.obolibrary.org/obo/CL_0000540|http://purl.obolibrary.org/obo/TGEMO_00001 #> WT_BDNF_24h_3 http://purl.obolibrary.org/obo/UBERON_0001893|http://purl.org/commons/record/ncbi_gene/12064|http://purl.org/commons/record/ncbi_gene/22433|http://purl.obolibrary.org/obo/CL_0000540|http://purl.obolibrary.org/obo/TGEMO_00001 #> KO_basal_1 http://purl.obolibrary.org/obo/UBERON_0001893|http://purl.org/commons/record/ncbi_gene/12064|http://purl.org/commons/record/ncbi_gene/22433|http://purl.obolibrary.org/obo/CL_0000540|http://purl.obolibrary.org/obo/TGEMO_00001 #> KO_basal_3 http://purl.obolibrary.org/obo/UBERON_0001893|http://purl.org/commons/record/ncbi_gene/12064|http://purl.org/commons/record/ncbi_gene/22433|http://purl.obolibrary.org/obo/CL_0000540|http://purl.obolibrary.org/obo/TGEMO_00001 #> WT_BDNF_48h_3 http://purl.obolibrary.org/obo/UBERON_0001893|http://purl.org/commons/record/ncbi_gene/12064|http://purl.org/commons/record/ncbi_gene/22433|http://purl.obolibrary.org/obo/CL_0000540|http://purl.obolibrary.org/obo/TGEMO_00001 #> WT_BDNF_24h_4 http://purl.obolibrary.org/obo/UBERON_0001893|http://purl.org/commons/record/ncbi_gene/12064|http://purl.org/commons/record/ncbi_gene/22433|http://purl.obolibrary.org/obo/CL_0000540|http://purl.obolibrary.org/obo/TGEMO_00001 #> WT_BDNF_48h_5 http://purl.obolibrary.org/obo/UBERON_0001893|http://purl.org/commons/record/ncbi_gene/12064|http://purl.org/commons/record/ncbi_gene/22433|http://purl.obolibrary.org/obo/CL_0000540|http://purl.obolibrary.org/obo/TGEMO_00001 #> KO_BDNF_48h_1 http://purl.obolibrary.org/obo/UBERON_0001893|http://purl.org/commons/record/ncbi_gene/12064|http://purl.org/commons/record/ncbi_gene/22433|http://purl.obolibrary.org/obo/CL_0000540|http://purl.obolibrary.org/obo/TGEMO_00001 #> KO_BDNF_24h_1 http://purl.obolibrary.org/obo/UBERON_0001893|http://purl.org/commons/record/ncbi_gene/12064|http://purl.org/commons/record/ncbi_gene/22433|http://purl.obolibrary.org/obo/CL_0000540|http://purl.obolibrary.org/obo/TGEMO_00001 #> KO_BDNF_24h_3 http://purl.obolibrary.org/obo/UBERON_0001893|http://purl.org/commons/record/ncbi_gene/12064|http://purl.org/commons/record/ncbi_gene/22433|http://purl.obolibrary.org/obo/CL_0000540|http://purl.obolibrary.org/obo/TGEMO_00001 #> WT_basal_2 http://purl.obolibrary.org/obo/UBERON_0001893|http://purl.org/commons/record/ncbi_gene/12064|http://purl.org/commons/record/ncbi_gene/22433|http://purl.obolibrary.org/obo/CL_0000540|http://purl.obolibrary.org/obo/TGEMO_00001 #> KO_BDNF_48h_3 http://purl.obolibrary.org/obo/UBERON_0001893|http://purl.org/commons/record/ncbi_gene/12064|http://purl.org/commons/record/ncbi_gene/22433|http://purl.obolibrary.org/obo/CL_0000540|http://purl.obolibrary.org/obo/TGEMO_00001 #> KO_BDNF_48h_4 http://purl.obolibrary.org/obo/UBERON_0001893|http://purl.org/commons/record/ncbi_gene/12064|http://purl.org/commons/record/ncbi_gene/22433|http://purl.obolibrary.org/obo/CL_0000540|http://purl.obolibrary.org/obo/TGEMO_00001 #> WT_BDNF_48h_1 http://purl.obolibrary.org/obo/UBERON_0001893|http://purl.org/commons/record/ncbi_gene/12064|http://purl.org/commons/record/ncbi_gene/22433|http://purl.obolibrary.org/obo/CL_0000540|http://purl.obolibrary.org/obo/TGEMO_00001 #> WT_basal_5 http://purl.obolibrary.org/obo/UBERON_0001893|http://purl.org/commons/record/ncbi_gene/12064|http://purl.org/commons/record/ncbi_gene/22433|http://purl.obolibrary.org/obo/CL_0000540|http://purl.obolibrary.org/obo/TGEMO_00001 #> KO_basal_2 http://purl.obolibrary.org/obo/UBERON_0001893|http://purl.org/commons/record/ncbi_gene/12064|http://purl.org/commons/record/ncbi_gene/22433|http://purl.obolibrary.org/obo/CL_0000540|http://purl.obolibrary.org/obo/TGEMO_00001 #> WT_BDNF_24h_2 http://purl.obolibrary.org/obo/UBERON_0001893|http://purl.org/commons/record/ncbi_gene/12064|http://purl.org/commons/record/ncbi_gene/22433|http://purl.obolibrary.org/obo/CL_0000540|http://purl.obolibrary.org/obo/TGEMO_00001 #> KO_basal_4 http://purl.obolibrary.org/obo/UBERON_0001893|http://purl.org/commons/record/ncbi_gene/12064|http://purl.org/commons/record/ncbi_gene/22433|http://purl.obolibrary.org/obo/CL_0000540|http://purl.obolibrary.org/obo/TGEMO_00001 #> KO_basal_5 http://purl.obolibrary.org/obo/UBERON_0001893|http://purl.org/commons/record/ncbi_gene/12064|http://purl.org/commons/record/ncbi_gene/22433|http://purl.obolibrary.org/obo/CL_0000540|http://purl.obolibrary.org/obo/TGEMO_00001 #> WT_BDNF_48h_4 http://purl.obolibrary.org/obo/UBERON_0001893|http://purl.org/commons/record/ncbi_gene/12064|http://purl.org/commons/record/ncbi_gene/22433|http://purl.obolibrary.org/obo/CL_0000540|http://purl.obolibrary.org/obo/TGEMO_00001 #> KO_BDNF_24h_5 http://purl.obolibrary.org/obo/UBERON_0001893|http://purl.org/commons/record/ncbi_gene/12064|http://purl.org/commons/record/ncbi_gene/22433|http://purl.obolibrary.org/obo/CL_0000540|http://purl.obolibrary.org/obo/TGEMO_00001 #> KO_BDNF_48h_2 http://purl.obolibrary.org/obo/UBERON_0001893|http://purl.org/commons/record/ncbi_gene/12064|http://purl.org/commons/record/ncbi_gene/22433|http://purl.obolibrary.org/obo/CL_0000540|http://purl.obolibrary.org/obo/TGEMO_00001 #> KO_BDNF_24h_2 http://purl.obolibrary.org/obo/UBERON_0001893|http://purl.org/commons/record/ncbi_gene/12064|http://purl.org/commons/record/ncbi_gene/22433|http://purl.obolibrary.org/obo/CL_0000540|http://purl.obolibrary.org/obo/TGEMO_00001 #> WT_basal_1 http://purl.obolibrary.org/obo/UBERON_0001893|http://purl.org/commons/record/ncbi_gene/12064|http://purl.org/commons/record/ncbi_gene/22433|http://purl.obolibrary.org/obo/CL_0000540|http://purl.obolibrary.org/obo/TGEMO_00001 #> KO_BDNF_24h_4 http://purl.obolibrary.org/obo/UBERON_0001893|http://purl.org/commons/record/ncbi_gene/12064|http://purl.org/commons/record/ncbi_gene/22433|http://purl.obolibrary.org/obo/CL_0000540|http://purl.obolibrary.org/obo/TGEMO_00001 #> WT_basal_3 http://purl.obolibrary.org/obo/UBERON_0001893|http://purl.org/commons/record/ncbi_gene/12064|http://purl.org/commons/record/ncbi_gene/22433|http://purl.obolibrary.org/obo/CL_0000540|http://purl.obolibrary.org/obo/TGEMO_00001 #> platformName technologyType externalDatabase troubled #> WT_basal_4 GPL339 ONECOLOR GEO FALSE #> KO_BDNF_48h_5 GPL339 ONECOLOR GEO FALSE #> WT_BDNF_24h_5 GPL339 ONECOLOR GEO FALSE #> WT_BDNF_48h_2 GPL339 ONECOLOR GEO FALSE #> WT_BDNF_24h_1 GPL339 ONECOLOR GEO FALSE #> WT_BDNF_24h_3 GPL339 ONECOLOR GEO FALSE #> KO_basal_1 GPL339 ONECOLOR GEO FALSE #> KO_basal_3 GPL339 ONECOLOR GEO FALSE #> WT_BDNF_48h_3 GPL339 ONECOLOR GEO FALSE #> WT_BDNF_24h_4 GPL339 ONECOLOR GEO FALSE #> WT_BDNF_48h_5 GPL339 ONECOLOR GEO FALSE #> KO_BDNF_48h_1 GPL339 ONECOLOR GEO FALSE #> KO_BDNF_24h_1 GPL339 ONECOLOR GEO FALSE #> KO_BDNF_24h_3 GPL339 ONECOLOR GEO FALSE #> WT_basal_2 GPL339 ONECOLOR GEO FALSE #> KO_BDNF_48h_3 GPL339 ONECOLOR GEO FALSE #> KO_BDNF_48h_4 GPL339 ONECOLOR GEO FALSE #> WT_BDNF_48h_1 GPL339 ONECOLOR GEO FALSE #> WT_basal_5 GPL339 ONECOLOR GEO FALSE #> KO_basal_2 GPL339 ONECOLOR GEO FALSE #> WT_BDNF_24h_2 GPL339 ONECOLOR GEO FALSE #> KO_basal_4 GPL339 ONECOLOR GEO FALSE #> KO_basal_5 GPL339 ONECOLOR GEO FALSE #> WT_BDNF_48h_4 GPL339 ONECOLOR GEO FALSE #> KO_BDNF_24h_5 GPL339 ONECOLOR GEO FALSE #> KO_BDNF_48h_2 GPL339 ONECOLOR GEO FALSE #> KO_BDNF_24h_2 GPL339 ONECOLOR GEO FALSE #> WT_basal_1 GPL339 ONECOLOR GEO FALSE #> KO_BDNF_24h_4 GPL339 ONECOLOR GEO FALSE #> WT_basal_3 GPL339 ONECOLOR GEO FALSE #> troubleDetails #> WT_basal_4 No trouble details provided. #> KO_BDNF_48h_5 No trouble details provided. #> WT_BDNF_24h_5 No trouble details provided. #> WT_BDNF_48h_2 No trouble details provided. #> WT_BDNF_24h_1 No trouble details provided. #> WT_BDNF_24h_3 No trouble details provided. #> KO_basal_1 No trouble details provided. #> KO_basal_3 No trouble details provided. #> WT_BDNF_48h_3 No trouble details provided. #> WT_BDNF_24h_4 No trouble details provided. #> WT_BDNF_48h_5 No trouble details provided. #> KO_BDNF_48h_1 No trouble details provided. #> KO_BDNF_24h_1 No trouble details provided. #> KO_BDNF_24h_3 No trouble details provided. #> WT_basal_2 No trouble details provided. #> KO_BDNF_48h_3 No trouble details provided. #> KO_BDNF_48h_4 No trouble details provided. #> WT_BDNF_48h_1 No trouble details provided. #> WT_basal_5 No trouble details provided. #> KO_basal_2 No trouble details provided. #> WT_BDNF_24h_2 No trouble details provided. #> KO_basal_4 No trouble details provided. #> KO_basal_5 No trouble details provided. #> WT_BDNF_48h_4 No trouble details provided. #> KO_BDNF_24h_5 No trouble details provided. #> KO_BDNF_48h_2 No trouble details provided. #> KO_BDNF_24h_2 No trouble details provided. #> WT_basal_1 No trouble details provided. #> KO_BDNF_24h_4 No trouble details provided. #> WT_basal_3 No trouble details provided. #> batchConfoundDescription #> WT_basal_4 Factor 'SamplingTimePoint' may be confounded with batches; p=7.5e-07 #> KO_BDNF_48h_5 Factor 'SamplingTimePoint' may be confounded with batches; p=7.5e-07 #> WT_BDNF_24h_5 Factor 'SamplingTimePoint' may be confounded with batches; p=7.5e-07 #> WT_BDNF_48h_2 Factor 'SamplingTimePoint' may be confounded with batches; p=7.5e-07 #> WT_BDNF_24h_1 Factor 'SamplingTimePoint' may be confounded with batches; p=7.5e-07 #> WT_BDNF_24h_3 Factor 'SamplingTimePoint' may be confounded with batches; p=7.5e-07 #> KO_basal_1 Factor 'SamplingTimePoint' may be confounded with batches; p=7.5e-07 #> KO_basal_3 Factor 'SamplingTimePoint' may be confounded with batches; p=7.5e-07 #> WT_BDNF_48h_3 Factor 'SamplingTimePoint' may be confounded with batches; p=7.5e-07 #> WT_BDNF_24h_4 Factor 'SamplingTimePoint' may be confounded with batches; p=7.5e-07 #> WT_BDNF_48h_5 Factor 'SamplingTimePoint' may be confounded with batches; p=7.5e-07 #> KO_BDNF_48h_1 Factor 'SamplingTimePoint' may be confounded with batches; p=7.5e-07 #> KO_BDNF_24h_1 Factor 'SamplingTimePoint' may be confounded with batches; p=7.5e-07 #> KO_BDNF_24h_3 Factor 'SamplingTimePoint' may be confounded with batches; p=7.5e-07 #> WT_basal_2 Factor 'SamplingTimePoint' may be confounded with batches; p=7.5e-07 #> KO_BDNF_48h_3 Factor 'SamplingTimePoint' may be confounded with batches; p=7.5e-07 #> KO_BDNF_48h_4 Factor 'SamplingTimePoint' may be confounded with batches; p=7.5e-07 #> WT_BDNF_48h_1 Factor 'SamplingTimePoint' may be confounded with batches; p=7.5e-07 #> WT_basal_5 Factor 'SamplingTimePoint' may be confounded with batches; p=7.5e-07 #> KO_basal_2 Factor 'SamplingTimePoint' may be confounded with batches; p=7.5e-07 #> WT_BDNF_24h_2 Factor 'SamplingTimePoint' may be confounded with batches; p=7.5e-07 #> KO_basal_4 Factor 'SamplingTimePoint' may be confounded with batches; p=7.5e-07 #> KO_basal_5 Factor 'SamplingTimePoint' may be confounded with batches; p=7.5e-07 #> WT_BDNF_48h_4 Factor 'SamplingTimePoint' may be confounded with batches; p=7.5e-07 #> KO_BDNF_24h_5 Factor 'SamplingTimePoint' may be confounded with batches; p=7.5e-07 #> KO_BDNF_48h_2 Factor 'SamplingTimePoint' may be confounded with batches; p=7.5e-07 #> KO_BDNF_24h_2 Factor 'SamplingTimePoint' may be confounded with batches; p=7.5e-07 #> WT_basal_1 Factor 'SamplingTimePoint' may be confounded with batches; p=7.5e-07 #> KO_BDNF_24h_4 Factor 'SamplingTimePoint' may be confounded with batches; p=7.5e-07 #> WT_basal_3 Factor 'SamplingTimePoint' may be confounded with batches; p=7.5e-07 #> batchEffectDescription #> WT_basal_4 This data set may have a batch artifact (PC 1), p=5.9980e-05 #> KO_BDNF_48h_5 This data set may have a batch artifact (PC 1), p=5.9980e-05 #> WT_BDNF_24h_5 This data set may have a batch artifact (PC 1), p=5.9980e-05 #> WT_BDNF_48h_2 This data set may have a batch artifact (PC 1), p=5.9980e-05 #> WT_BDNF_24h_1 This data set may have a batch artifact (PC 1), p=5.9980e-05 #> WT_BDNF_24h_3 This data set may have a batch artifact (PC 1), p=5.9980e-05 #> KO_basal_1 This data set may have a batch artifact (PC 1), p=5.9980e-05 #> KO_basal_3 This data set may have a batch artifact (PC 1), p=5.9980e-05 #> WT_BDNF_48h_3 This data set may have a batch artifact (PC 1), p=5.9980e-05 #> WT_BDNF_24h_4 This data set may have a batch artifact (PC 1), p=5.9980e-05 #> WT_BDNF_48h_5 This data set may have a batch artifact (PC 1), p=5.9980e-05 #> KO_BDNF_48h_1 This data set may have a batch artifact (PC 1), p=5.9980e-05 #> KO_BDNF_24h_1 This data set may have a batch artifact (PC 1), p=5.9980e-05 #> KO_BDNF_24h_3 This data set may have a batch artifact (PC 1), p=5.9980e-05 #> WT_basal_2 This data set may have a batch artifact (PC 1), p=5.9980e-05 #> KO_BDNF_48h_3 This data set may have a batch artifact (PC 1), p=5.9980e-05 #> KO_BDNF_48h_4 This data set may have a batch artifact (PC 1), p=5.9980e-05 #> WT_BDNF_48h_1 This data set may have a batch artifact (PC 1), p=5.9980e-05 #> WT_basal_5 This data set may have a batch artifact (PC 1), p=5.9980e-05 #> KO_basal_2 This data set may have a batch artifact (PC 1), p=5.9980e-05 #> WT_BDNF_24h_2 This data set may have a batch artifact (PC 1), p=5.9980e-05 #> KO_basal_4 This data set may have a batch artifact (PC 1), p=5.9980e-05 #> KO_basal_5 This data set may have a batch artifact (PC 1), p=5.9980e-05 #> WT_BDNF_48h_4 This data set may have a batch artifact (PC 1), p=5.9980e-05 #> KO_BDNF_24h_5 This data set may have a batch artifact (PC 1), p=5.9980e-05 #> KO_BDNF_48h_2 This data set may have a batch artifact (PC 1), p=5.9980e-05 #> KO_BDNF_24h_2 This data set may have a batch artifact (PC 1), p=5.9980e-05 #> WT_basal_1 This data set may have a batch artifact (PC 1), p=5.9980e-05 #> KO_BDNF_24h_4 This data set may have a batch artifact (PC 1), p=5.9980e-05 #> WT_basal_3 This data set may have a batch artifact (PC 1), p=5.9980e-05 #> geeq.batchConfound geeq.batchEffect geeq.batchCorrected #> WT_basal_4 -1 0 FALSE #> KO_BDNF_48h_5 -1 0 FALSE #> WT_BDNF_24h_5 -1 0 FALSE #> WT_BDNF_48h_2 -1 0 FALSE #> WT_BDNF_24h_1 -1 0 FALSE #> WT_BDNF_24h_3 -1 0 FALSE #> KO_basal_1 -1 0 FALSE #> KO_basal_3 -1 0 FALSE #> WT_BDNF_48h_3 -1 0 FALSE #> WT_BDNF_24h_4 -1 0 FALSE #> WT_BDNF_48h_5 -1 0 FALSE #> KO_BDNF_48h_1 -1 0 FALSE #> KO_BDNF_24h_1 -1 0 FALSE #> KO_BDNF_24h_3 -1 0 FALSE #> WT_basal_2 -1 0 FALSE #> KO_BDNF_48h_3 -1 0 FALSE #> KO_BDNF_48h_4 -1 0 FALSE #> WT_BDNF_48h_1 -1 0 FALSE #> WT_basal_5 -1 0 FALSE #> KO_basal_2 -1 0 FALSE #> WT_BDNF_24h_2 -1 0 FALSE #> KO_basal_4 -1 0 FALSE #> KO_basal_5 -1 0 FALSE #> WT_BDNF_48h_4 -1 0 FALSE #> KO_BDNF_24h_5 -1 0 FALSE #> KO_BDNF_48h_2 -1 0 FALSE #> KO_BDNF_24h_2 -1 0 FALSE #> WT_basal_1 -1 0 FALSE #> KO_BDNF_24h_4 -1 0 FALSE #> WT_basal_3 -1 0 FALSE #> geeq.batchInfo geeq.qualityScore geeq.suitabilityScore #> WT_basal_4 1 0.5707117 0.625 #> KO_BDNF_48h_5 1 0.5707117 0.625 #> WT_BDNF_24h_5 1 0.5707117 0.625 #> WT_BDNF_48h_2 1 0.5707117 0.625 #> WT_BDNF_24h_1 1 0.5707117 0.625 #> WT_BDNF_24h_3 1 0.5707117 0.625 #> KO_basal_1 1 0.5707117 0.625 #> KO_basal_3 1 0.5707117 0.625 #> WT_BDNF_48h_3 1 0.5707117 0.625 #> WT_BDNF_24h_4 1 0.5707117 0.625 #> WT_BDNF_48h_5 1 0.5707117 0.625 #> KO_BDNF_48h_1 1 0.5707117 0.625 #> KO_BDNF_24h_1 1 0.5707117 0.625 #> KO_BDNF_24h_3 1 0.5707117 0.625 #> WT_basal_2 1 0.5707117 0.625 #> KO_BDNF_48h_3 1 0.5707117 0.625 #> KO_BDNF_48h_4 1 0.5707117 0.625 #> WT_BDNF_48h_1 1 0.5707117 0.625 #> WT_basal_5 1 0.5707117 0.625 #> KO_basal_2 1 0.5707117 0.625 #> WT_BDNF_24h_2 1 0.5707117 0.625 #> KO_basal_4 1 0.5707117 0.625 #> KO_basal_5 1 0.5707117 0.625 #> WT_BDNF_48h_4 1 0.5707117 0.625 #> KO_BDNF_24h_5 1 0.5707117 0.625 #> KO_BDNF_48h_2 1 0.5707117 0.625 #> KO_BDNF_24h_2 1 0.5707117 0.625 #> WT_basal_1 1 0.5707117 0.625 #> KO_BDNF_24h_4 1 0.5707117 0.625 #> WT_basal_3 1 0.5707117 0.625 #> geeq.publication geeq.platformAmount geeq.platformsTechMulti #> WT_basal_4 1 1 1 #> KO_BDNF_48h_5 1 1 1 #> WT_BDNF_24h_5 1 1 1 #> WT_BDNF_48h_2 1 1 1 #> WT_BDNF_24h_1 1 1 1 #> WT_BDNF_24h_3 1 1 1 #> KO_basal_1 1 1 1 #> KO_basal_3 1 1 1 #> WT_BDNF_48h_3 1 1 1 #> WT_BDNF_24h_4 1 1 1 #> WT_BDNF_48h_5 1 1 1 #> KO_BDNF_48h_1 1 1 1 #> KO_BDNF_24h_1 1 1 1 #> KO_BDNF_24h_3 1 1 1 #> WT_basal_2 1 1 1 #> KO_BDNF_48h_3 1 1 1 #> KO_BDNF_48h_4 1 1 1 #> WT_BDNF_48h_1 1 1 1 #> WT_basal_5 1 1 1 #> KO_basal_2 1 1 1 #> WT_BDNF_24h_2 1 1 1 #> KO_basal_4 1 1 1 #> KO_basal_5 1 1 1 #> WT_BDNF_48h_4 1 1 1 #> KO_BDNF_24h_5 1 1 1 #> KO_BDNF_48h_2 1 1 1 #> KO_BDNF_24h_2 1 1 1 #> WT_basal_1 1 1 1 #> KO_BDNF_24h_4 1 1 1 #> WT_basal_3 1 1 1 #> geeq.platformPopularity geeq.avgPlatformSize geeq.sampleSize #> WT_basal_4 1 0 1 #> KO_BDNF_48h_5 1 0 1 #> WT_BDNF_24h_5 1 0 1 #> WT_BDNF_48h_2 1 0 1 #> WT_BDNF_24h_1 1 0 1 #> WT_BDNF_24h_3 1 0 1 #> KO_basal_1 1 0 1 #> KO_basal_3 1 0 1 #> WT_BDNF_48h_3 1 0 1 #> WT_BDNF_24h_4 1 0 1 #> WT_BDNF_48h_5 1 0 1 #> KO_BDNF_48h_1 1 0 1 #> KO_BDNF_24h_1 1 0 1 #> KO_BDNF_24h_3 1 0 1 #> WT_basal_2 1 0 1 #> KO_BDNF_48h_3 1 0 1 #> KO_BDNF_48h_4 1 0 1 #> WT_BDNF_48h_1 1 0 1 #> WT_basal_5 1 0 1 #> KO_basal_2 1 0 1 #> WT_BDNF_24h_2 1 0 1 #> KO_basal_4 1 0 1 #> KO_basal_5 1 0 1 #> WT_BDNF_48h_4 1 0 1 #> KO_BDNF_24h_5 1 0 1 #> KO_BDNF_48h_2 1 0 1 #> KO_BDNF_24h_2 1 0 1 #> WT_basal_1 1 0 1 #> KO_BDNF_24h_4 1 0 1 #> WT_basal_3 1 0 1 #> geeq.rawData geeq.missingValues geeq.outliers #> WT_basal_4 -1 1 1 #> KO_BDNF_48h_5 -1 1 1 #> WT_BDNF_24h_5 -1 1 1 #> WT_BDNF_48h_2 -1 1 1 #> WT_BDNF_24h_1 -1 1 1 #> WT_BDNF_24h_3 -1 1 1 #> KO_basal_1 -1 1 1 #> KO_basal_3 -1 1 1 #> WT_BDNF_48h_3 -1 1 1 #> WT_BDNF_24h_4 -1 1 1 #> WT_BDNF_48h_5 -1 1 1 #> KO_BDNF_48h_1 -1 1 1 #> KO_BDNF_24h_1 -1 1 1 #> KO_BDNF_24h_3 -1 1 1 #> WT_basal_2 -1 1 1 #> KO_BDNF_48h_3 -1 1 1 #> KO_BDNF_48h_4 -1 1 1 #> WT_BDNF_48h_1 -1 1 1 #> WT_basal_5 -1 1 1 #> KO_basal_2 -1 1 1 #> WT_BDNF_24h_2 -1 1 1 #> KO_basal_4 -1 1 1 #> KO_basal_5 -1 1 1 #> WT_BDNF_48h_4 -1 1 1 #> KO_BDNF_24h_5 -1 1 1 #> KO_BDNF_48h_2 -1 1 1 #> KO_BDNF_24h_2 -1 1 1 #> WT_basal_1 -1 1 1 #> KO_BDNF_24h_4 -1 1 1 #> WT_basal_3 -1 1 1 #> geeq.platformTechnology geeq.replicates #> WT_basal_4 1 1 #> KO_BDNF_48h_5 1 1 #> WT_BDNF_24h_5 1 1 #> WT_BDNF_48h_2 1 1 #> WT_BDNF_24h_1 1 1 #> WT_BDNF_24h_3 1 1 #> KO_basal_1 1 1 #> KO_basal_3 1 1 #> WT_BDNF_48h_3 1 1 #> WT_BDNF_24h_4 1 1 #> WT_BDNF_48h_5 1 1 #> KO_BDNF_48h_1 1 1 #> KO_BDNF_24h_1 1 1 #> KO_BDNF_24h_3 1 1 #> WT_basal_2 1 1 #> KO_BDNF_48h_3 1 1 #> KO_BDNF_48h_4 1 1 #> WT_BDNF_48h_1 1 1 #> WT_basal_5 1 1 #> KO_basal_2 1 1 #> WT_BDNF_24h_2 1 1 #> KO_basal_4 1 1 #> KO_basal_5 1 1 #> WT_BDNF_48h_4 1 1 #> KO_BDNF_24h_5 1 1 #> KO_BDNF_48h_2 1 1 #> KO_BDNF_24h_2 1 1 #> WT_basal_1 1 1 #> KO_BDNF_24h_4 1 1 #> WT_basal_3 1 1 #> geeq.medianSampleCorrelation id sampleName accession #> WT_basal_4 0.9949821 41018 WT_basal_4 GSM286000 #> KO_BDNF_48h_5 0.9949821 41007 KO_BDNF_48h_5 GSM286011 #> WT_BDNF_24h_5 0.9949821 41029 WT_BDNF_24h_5 GSM285848 #> WT_BDNF_48h_2 0.9949821 41027 WT_BDNF_48h_2 GSM285850 #> WT_BDNF_24h_1 0.9949821 41016 WT_BDNF_24h_1 GSM286002 #> WT_BDNF_24h_3 0.9949821 41014 WT_BDNF_24h_3 GSM286004 #> KO_basal_1 0.9949821 41036 KO_basal_1 GSM285796 #> KO_basal_3 0.9949821 41025 KO_basal_3 GSM285993 #> WT_BDNF_48h_3 0.9949821 41024 WT_BDNF_48h_3 GSM285994 #> WT_BDNF_24h_4 0.9949821 41013 WT_BDNF_24h_4 GSM286005 #> WT_BDNF_48h_5 0.9949821 41022 WT_BDNF_48h_5 GSM285996 #> KO_BDNF_48h_1 0.9949821 41011 KO_BDNF_48h_1 GSM286007 #> KO_BDNF_24h_1 0.9949821 41033 KO_BDNF_24h_1 GSM285841 #> KO_BDNF_24h_3 0.9949821 41031 KO_BDNF_24h_3 GSM285846 #> WT_basal_2 0.9949821 41020 WT_basal_2 GSM285998 #> KO_BDNF_48h_3 0.9949821 41009 KO_BDNF_48h_3 GSM286009 #> KO_BDNF_48h_4 0.9949821 41008 KO_BDNF_48h_4 GSM286010 #> WT_BDNF_48h_1 0.9949821 41028 WT_BDNF_48h_1 GSM285849 #> WT_basal_5 0.9949821 41017 WT_basal_5 GSM286001 #> KO_basal_2 0.9949821 41026 KO_basal_2 GSM285992 #> WT_BDNF_24h_2 0.9949821 41015 WT_BDNF_24h_2 GSM286003 #> KO_basal_4 0.9949821 41035 KO_basal_4 GSM285813 #> KO_basal_5 0.9949821 41034 KO_basal_5 GSM285832 #> WT_BDNF_48h_4 0.9949821 41023 WT_BDNF_48h_4 GSM285995 #> KO_BDNF_24h_5 0.9949821 41012 KO_BDNF_24h_5 GSM286006 #> KO_BDNF_48h_2 0.9949821 41010 KO_BDNF_48h_2 GSM286008 #> KO_BDNF_24h_2 0.9949821 41032 KO_BDNF_24h_2 GSM285844 #> WT_basal_1 0.9949821 41021 WT_basal_1 GSM285997 #> KO_BDNF_24h_4 0.9949821 41030 KO_BDNF_24h_4 GSM285847 #> WT_basal_3 0.9949821 41019 WT_basal_3 GSM285999 #> sampleBiomaterialID sampleAnnotCategory #> WT_basal_4 36144 timepoint|genotype|block #> KO_BDNF_48h_5 36133 genotype;genotype|timepoint|block #> WT_BDNF_24h_5 36155 timepoint|genotype|block #> WT_BDNF_48h_2 36153 genotype|timepoint|block #> WT_BDNF_24h_1 36142 timepoint|genotype|block #> WT_BDNF_24h_3 36140 timepoint|genotype|block #> KO_basal_1 36162 timepoint|genotype;genotype|block #> KO_basal_3 36151 timepoint|genotype;genotype|block #> WT_BDNF_48h_3 36150 genotype|timepoint|block #> WT_BDNF_24h_4 36139 timepoint|genotype|block #> WT_BDNF_48h_5 36148 genotype|timepoint|block #> KO_BDNF_48h_1 36137 genotype;genotype|timepoint|block #> KO_BDNF_24h_1 36159 timepoint|genotype;genotype|block #> KO_BDNF_24h_3 36157 timepoint|genotype;genotype|block #> WT_basal_2 36146 timepoint|genotype|block #> KO_BDNF_48h_3 36135 genotype;genotype|timepoint|block #> KO_BDNF_48h_4 36134 genotype;genotype|timepoint|block #> WT_BDNF_48h_1 36154 genotype|timepoint|block #> WT_basal_5 36143 timepoint|genotype|block #> KO_basal_2 36152 timepoint|genotype;genotype|block #> WT_BDNF_24h_2 36141 timepoint|genotype|block #> KO_basal_4 36161 timepoint|genotype;genotype|block #> KO_basal_5 36160 timepoint|genotype;genotype|block #> WT_BDNF_48h_4 36149 genotype|timepoint|block #> KO_BDNF_24h_5 36138 timepoint|genotype;genotype|block #> KO_BDNF_48h_2 36136 genotype;genotype|timepoint|block #> KO_BDNF_24h_2 36158 timepoint|genotype;genotype|block #> WT_basal_1 36147 timepoint|genotype|block #> KO_BDNF_24h_4 36156 timepoint|genotype;genotype|block #> WT_basal_3 36145 timepoint|genotype|block #> sampleAnnotCategoryOntoID #> WT_basal_4 EFO_0000724|EFO_0000513|EFO_0005067 #> KO_BDNF_48h_5 EFO_0000513;EFO_0000513|EFO_0000724|EFO_0005067 #> WT_BDNF_24h_5 EFO_0000724|EFO_0000513|EFO_0005067 #> WT_BDNF_48h_2 EFO_0000513|EFO_0000724|EFO_0005067 #> WT_BDNF_24h_1 EFO_0000724|EFO_0000513|EFO_0005067 #> WT_BDNF_24h_3 EFO_0000724|EFO_0000513|EFO_0005067 #> KO_basal_1 EFO_0000724|EFO_0000513;EFO_0000513|EFO_0005067 #> KO_basal_3 EFO_0000724|EFO_0000513;EFO_0000513|EFO_0005067 #> WT_BDNF_48h_3 EFO_0000513|EFO_0000724|EFO_0005067 #> WT_BDNF_24h_4 EFO_0000724|EFO_0000513|EFO_0005067 #> WT_BDNF_48h_5 EFO_0000513|EFO_0000724|EFO_0005067 #> KO_BDNF_48h_1 EFO_0000513;EFO_0000513|EFO_0000724|EFO_0005067 #> KO_BDNF_24h_1 EFO_0000724|EFO_0000513;EFO_0000513|EFO_0005067 #> KO_BDNF_24h_3 EFO_0000724|EFO_0000513;EFO_0000513|EFO_0005067 #> WT_basal_2 EFO_0000724|EFO_0000513|EFO_0005067 #> KO_BDNF_48h_3 EFO_0000513;EFO_0000513|EFO_0000724|EFO_0005067 #> KO_BDNF_48h_4 EFO_0000513;EFO_0000513|EFO_0000724|EFO_0005067 #> WT_BDNF_48h_1 EFO_0000513|EFO_0000724|EFO_0005067 #> WT_basal_5 EFO_0000724|EFO_0000513|EFO_0005067 #> KO_basal_2 EFO_0000724|EFO_0000513;EFO_0000513|EFO_0005067 #> WT_BDNF_24h_2 EFO_0000724|EFO_0000513|EFO_0005067 #> KO_basal_4 EFO_0000724|EFO_0000513;EFO_0000513|EFO_0005067 #> KO_basal_5 EFO_0000724|EFO_0000513;EFO_0000513|EFO_0005067 #> WT_BDNF_48h_4 EFO_0000513|EFO_0000724|EFO_0005067 #> KO_BDNF_24h_5 EFO_0000724|EFO_0000513;EFO_0000513|EFO_0005067 #> KO_BDNF_48h_2 EFO_0000513;EFO_0000513|EFO_0000724|EFO_0005067 #> KO_BDNF_24h_2 EFO_0000724|EFO_0000513;EFO_0000513|EFO_0005067 #> WT_basal_1 EFO_0000724|EFO_0000513|EFO_0005067 #> KO_BDNF_24h_4 EFO_0000724|EFO_0000513;EFO_0000513|EFO_0005067 #> WT_basal_3 EFO_0000724|EFO_0000513|EFO_0005067 #> sampleAnnotCategoryURI #> WT_basal_4 http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0005067 #> KO_BDNF_48h_5 http://www.ebi.ac.uk/efo/EFO_0000513;http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0005067 #> WT_BDNF_24h_5 http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0005067 #> WT_BDNF_48h_2 http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0005067 #> WT_BDNF_24h_1 http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0005067 #> WT_BDNF_24h_3 http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0005067 #> KO_basal_1 http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0000513;http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0005067 #> KO_basal_3 http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0000513;http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0005067 #> WT_BDNF_48h_3 http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0005067 #> WT_BDNF_24h_4 http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0005067 #> WT_BDNF_48h_5 http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0005067 #> KO_BDNF_48h_1 http://www.ebi.ac.uk/efo/EFO_0000513;http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0005067 #> KO_BDNF_24h_1 http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0000513;http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0005067 #> KO_BDNF_24h_3 http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0000513;http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0005067 #> WT_basal_2 http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0005067 #> KO_BDNF_48h_3 http://www.ebi.ac.uk/efo/EFO_0000513;http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0005067 #> KO_BDNF_48h_4 http://www.ebi.ac.uk/efo/EFO_0000513;http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0005067 #> WT_BDNF_48h_1 http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0005067 #> WT_basal_5 http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0005067 #> KO_basal_2 http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0000513;http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0005067 #> WT_BDNF_24h_2 http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0005067 #> KO_basal_4 http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0000513;http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0005067 #> KO_basal_5 http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0000513;http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0005067 #> WT_BDNF_48h_4 http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0005067 #> KO_BDNF_24h_5 http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0000513;http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0005067 #> KO_BDNF_48h_2 http://www.ebi.ac.uk/efo/EFO_0000513;http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0005067 #> KO_BDNF_24h_2 http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0000513;http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0005067 #> WT_basal_1 http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0005067 #> KO_BDNF_24h_4 http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0000513;http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0005067 #> WT_basal_3 http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0005067 #> sampleAnnotBroadCategory sampleAnnotBroadCategoryOntoID #> WT_basal_4 timepoint|genotype|block EFO_0000724|EFO_0000513|EFO_0005067 #> KO_BDNF_48h_5 genotype|timepoint|block EFO_0000513|EFO_0000724|EFO_0005067 #> WT_BDNF_24h_5 timepoint|genotype|block EFO_0000724|EFO_0000513|EFO_0005067 #> WT_BDNF_48h_2 genotype|timepoint|block EFO_0000513|EFO_0000724|EFO_0005067 #> WT_BDNF_24h_1 timepoint|genotype|block EFO_0000724|EFO_0000513|EFO_0005067 #> WT_BDNF_24h_3 timepoint|genotype|block EFO_0000724|EFO_0000513|EFO_0005067 #> KO_basal_1 timepoint|genotype|block EFO_0000724|EFO_0000513|EFO_0005067 #> KO_basal_3 timepoint|genotype|block EFO_0000724|EFO_0000513|EFO_0005067 #> WT_BDNF_48h_3 genotype|timepoint|block EFO_0000513|EFO_0000724|EFO_0005067 #> WT_BDNF_24h_4 timepoint|genotype|block EFO_0000724|EFO_0000513|EFO_0005067 #> WT_BDNF_48h_5 genotype|timepoint|block EFO_0000513|EFO_0000724|EFO_0005067 #> KO_BDNF_48h_1 genotype|timepoint|block EFO_0000513|EFO_0000724|EFO_0005067 #> KO_BDNF_24h_1 timepoint|genotype|block EFO_0000724|EFO_0000513|EFO_0005067 #> KO_BDNF_24h_3 timepoint|genotype|block EFO_0000724|EFO_0000513|EFO_0005067 #> WT_basal_2 timepoint|genotype|block EFO_0000724|EFO_0000513|EFO_0005067 #> KO_BDNF_48h_3 genotype|timepoint|block EFO_0000513|EFO_0000724|EFO_0005067 #> KO_BDNF_48h_4 genotype|timepoint|block EFO_0000513|EFO_0000724|EFO_0005067 #> WT_BDNF_48h_1 genotype|timepoint|block EFO_0000513|EFO_0000724|EFO_0005067 #> WT_basal_5 timepoint|genotype|block EFO_0000724|EFO_0000513|EFO_0005067 #> KO_basal_2 timepoint|genotype|block EFO_0000724|EFO_0000513|EFO_0005067 #> WT_BDNF_24h_2 timepoint|genotype|block EFO_0000724|EFO_0000513|EFO_0005067 #> KO_basal_4 timepoint|genotype|block EFO_0000724|EFO_0000513|EFO_0005067 #> KO_basal_5 timepoint|genotype|block EFO_0000724|EFO_0000513|EFO_0005067 #> WT_BDNF_48h_4 genotype|timepoint|block EFO_0000513|EFO_0000724|EFO_0005067 #> KO_BDNF_24h_5 timepoint|genotype|block EFO_0000724|EFO_0000513|EFO_0005067 #> KO_BDNF_48h_2 genotype|timepoint|block EFO_0000513|EFO_0000724|EFO_0005067 #> KO_BDNF_24h_2 timepoint|genotype|block EFO_0000724|EFO_0000513|EFO_0005067 #> WT_basal_1 timepoint|genotype|block EFO_0000724|EFO_0000513|EFO_0005067 #> KO_BDNF_24h_4 timepoint|genotype|block EFO_0000724|EFO_0000513|EFO_0005067 #> WT_basal_3 timepoint|genotype|block EFO_0000724|EFO_0000513|EFO_0005067 #> sampleAnnotBroadCategoryURI #> WT_basal_4 http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0005067 #> KO_BDNF_48h_5 http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0005067 #> WT_BDNF_24h_5 http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0005067 #> WT_BDNF_48h_2 http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0005067 #> WT_BDNF_24h_1 http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0005067 #> WT_BDNF_24h_3 http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0005067 #> KO_basal_1 http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0005067 #> KO_basal_3 http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0005067 #> WT_BDNF_48h_3 http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0005067 #> WT_BDNF_24h_4 http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0005067 #> WT_BDNF_48h_5 http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0005067 #> KO_BDNF_48h_1 http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0005067 #> KO_BDNF_24h_1 http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0005067 #> KO_BDNF_24h_3 http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0005067 #> WT_basal_2 http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0005067 #> KO_BDNF_48h_3 http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0005067 #> KO_BDNF_48h_4 http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0005067 #> WT_BDNF_48h_1 http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0005067 #> WT_basal_5 http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0005067 #> KO_basal_2 http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0005067 #> WT_BDNF_24h_2 http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0005067 #> KO_basal_4 http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0005067 #> KO_basal_5 http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0005067 #> WT_BDNF_48h_4 http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0005067 #> KO_BDNF_24h_5 http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0005067 #> KO_BDNF_48h_2 http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0005067 #> KO_BDNF_24h_2 http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0005067 #> WT_basal_1 http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0005067 #> KO_BDNF_24h_4 http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0005067 #> WT_basal_3 http://www.ebi.ac.uk/efo/EFO_0000724|http://www.ebi.ac.uk/efo/EFO_0000513|http://www.ebi.ac.uk/efo/EFO_0005067 #> sampleAnnotation #> WT_basal_4 initial time point|wild type genotype|Batch_01_6/15/06 #> KO_BDNF_48h_5 Xbp1 [mouse] X-box binding protein 1;Homozygous negative|48 h|Batch_03_6/20/06 #> WT_BDNF_24h_5 24 h|wild type genotype|Batch_02_6/16/06 #> WT_BDNF_48h_2 wild type genotype|48 h|Batch_02_6/16/06 #> WT_BDNF_24h_1 24 h|wild type genotype|Batch_01_6/15/06 #> WT_BDNF_24h_3 24 h|wild type genotype|Batch_02_6/16/06 #> KO_basal_1 initial time point|Xbp1 [mouse] X-box binding protein 1;Homozygous negative|Batch_01_6/15/06 #> KO_basal_3 initial time point|Xbp1 [mouse] X-box binding protein 1;Homozygous negative|Batch_01_6/15/06 #> WT_BDNF_48h_3 wild type genotype|48 h|Batch_03_6/20/06 #> WT_BDNF_24h_4 24 h|wild type genotype|Batch_02_6/16/06 #> WT_BDNF_48h_5 wild type genotype|48 h|Batch_03_6/20/06 #> KO_BDNF_48h_1 Xbp1 [mouse] X-box binding protein 1;Homozygous negative|48 h|Batch_02_6/16/06 #> KO_BDNF_24h_1 24 h|Xbp1 [mouse] X-box binding protein 1;Homozygous negative|Batch_01_6/15/06 #> KO_BDNF_24h_3 24 h|Xbp1 [mouse] X-box binding protein 1;Homozygous negative|Batch_02_6/16/06 #> WT_basal_2 initial time point|wild type genotype|Batch_01_6/15/06 #> KO_BDNF_48h_3 Xbp1 [mouse] X-box binding protein 1;Homozygous negative|48 h|Batch_03_6/20/06 #> KO_BDNF_48h_4 Xbp1 [mouse] X-box binding protein 1;Homozygous negative|48 h|Batch_03_6/20/06 #> WT_BDNF_48h_1 wild type genotype|48 h|Batch_02_6/16/06 #> WT_basal_5 initial time point|wild type genotype|Batch_01_6/15/06 #> KO_basal_2 initial time point|Xbp1 [mouse] X-box binding protein 1;Homozygous negative|Batch_01_6/15/06 #> WT_BDNF_24h_2 24 h|wild type genotype|Batch_02_6/16/06 #> KO_basal_4 initial time point|Xbp1 [mouse] X-box binding protein 1;Homozygous negative|Batch_01_6/15/06 #> KO_basal_5 initial time point|Xbp1 [mouse] X-box binding protein 1;Homozygous negative|Batch_01_6/15/06 #> WT_BDNF_48h_4 wild type genotype|48 h|Batch_03_6/20/06 #> KO_BDNF_24h_5 24 h|Xbp1 [mouse] X-box binding protein 1;Homozygous negative|Batch_02_6/16/06 #> KO_BDNF_48h_2 Xbp1 [mouse] X-box binding protein 1;Homozygous negative|48 h|Batch_02_6/16/06 #> KO_BDNF_24h_2 24 h|Xbp1 [mouse] X-box binding protein 1;Homozygous negative|Batch_02_6/16/06 #> WT_basal_1 initial time point|wild type genotype|Batch_01_6/15/06 #> KO_BDNF_24h_4 24 h|Xbp1 [mouse] X-box binding protein 1;Homozygous negative|Batch_02_6/16/06 #> WT_basal_3 initial time point|wild type genotype|Batch_01_6/15/06 #> sampleAnnotationOntoID sampleAnnotType #> WT_basal_4 EFO_0004425|EFO_0005168|NA factor|factor|factor #> KO_BDNF_48h_5 GENE_22433;TGEMO_00001|NA|NA factor|factor|factor #> WT_BDNF_24h_5 NA|EFO_0005168|NA factor|factor|factor #> WT_BDNF_48h_2 EFO_0005168|NA|NA factor|factor|factor #> WT_BDNF_24h_1 NA|EFO_0005168|NA factor|factor|factor #> WT_BDNF_24h_3 NA|EFO_0005168|NA factor|factor|factor #> KO_basal_1 EFO_0004425|GENE_22433;TGEMO_00001|NA factor|factor|factor #> KO_basal_3 EFO_0004425|GENE_22433;TGEMO_00001|NA factor|factor|factor #> WT_BDNF_48h_3 EFO_0005168|NA|NA factor|factor|factor #> WT_BDNF_24h_4 NA|EFO_0005168|NA factor|factor|factor #> WT_BDNF_48h_5 EFO_0005168|NA|NA factor|factor|factor #> KO_BDNF_48h_1 GENE_22433;TGEMO_00001|NA|NA factor|factor|factor #> KO_BDNF_24h_1 NA|GENE_22433;TGEMO_00001|NA factor|factor|factor #> KO_BDNF_24h_3 NA|GENE_22433;TGEMO_00001|NA factor|factor|factor #> WT_basal_2 EFO_0004425|EFO_0005168|NA factor|factor|factor #> KO_BDNF_48h_3 GENE_22433;TGEMO_00001|NA|NA factor|factor|factor #> KO_BDNF_48h_4 GENE_22433;TGEMO_00001|NA|NA factor|factor|factor #> WT_BDNF_48h_1 EFO_0005168|NA|NA factor|factor|factor #> WT_basal_5 EFO_0004425|EFO_0005168|NA factor|factor|factor #> KO_basal_2 EFO_0004425|GENE_22433;TGEMO_00001|NA factor|factor|factor #> WT_BDNF_24h_2 NA|EFO_0005168|NA factor|factor|factor #> KO_basal_4 EFO_0004425|GENE_22433;TGEMO_00001|NA factor|factor|factor #> KO_basal_5 EFO_0004425|GENE_22433;TGEMO_00001|NA factor|factor|factor #> WT_BDNF_48h_4 EFO_0005168|NA|NA factor|factor|factor #> KO_BDNF_24h_5 NA|GENE_22433;TGEMO_00001|NA factor|factor|factor #> KO_BDNF_48h_2 GENE_22433;TGEMO_00001|NA|NA factor|factor|factor #> KO_BDNF_24h_2 NA|GENE_22433;TGEMO_00001|NA factor|factor|factor #> WT_basal_1 EFO_0004425|EFO_0005168|NA factor|factor|factor #> KO_BDNF_24h_4 NA|GENE_22433;TGEMO_00001|NA factor|factor|factor #> WT_basal_3 EFO_0004425|EFO_0005168|NA factor|factor|factor #> sampleAnnotationURI #> WT_basal_4 http://www.ebi.ac.uk/efo/EFO_0004425|http://www.ebi.ac.uk/efo/EFO_0005168|NA #> KO_BDNF_48h_5 http://purl.org/commons/record/ncbi_gene/22433;http://purl.obolibrary.org/obo/TGEMO_00001|NA|NA #> WT_BDNF_24h_5 NA|http://www.ebi.ac.uk/efo/EFO_0005168|NA #> WT_BDNF_48h_2 http://www.ebi.ac.uk/efo/EFO_0005168|NA|NA #> WT_BDNF_24h_1 NA|http://www.ebi.ac.uk/efo/EFO_0005168|NA #> WT_BDNF_24h_3 NA|http://www.ebi.ac.uk/efo/EFO_0005168|NA #> KO_basal_1 http://www.ebi.ac.uk/efo/EFO_0004425|http://purl.org/commons/record/ncbi_gene/22433;http://purl.obolibrary.org/obo/TGEMO_00001|NA #> KO_basal_3 http://www.ebi.ac.uk/efo/EFO_0004425|http://purl.org/commons/record/ncbi_gene/22433;http://purl.obolibrary.org/obo/TGEMO_00001|NA #> WT_BDNF_48h_3 http://www.ebi.ac.uk/efo/EFO_0005168|NA|NA #> WT_BDNF_24h_4 NA|http://www.ebi.ac.uk/efo/EFO_0005168|NA #> WT_BDNF_48h_5 http://www.ebi.ac.uk/efo/EFO_0005168|NA|NA #> KO_BDNF_48h_1 http://purl.org/commons/record/ncbi_gene/22433;http://purl.obolibrary.org/obo/TGEMO_00001|NA|NA #> KO_BDNF_24h_1 NA|http://purl.org/commons/record/ncbi_gene/22433;http://purl.obolibrary.org/obo/TGEMO_00001|NA #> KO_BDNF_24h_3 NA|http://purl.org/commons/record/ncbi_gene/22433;http://purl.obolibrary.org/obo/TGEMO_00001|NA #> WT_basal_2 http://www.ebi.ac.uk/efo/EFO_0004425|http://www.ebi.ac.uk/efo/EFO_0005168|NA #> KO_BDNF_48h_3 http://purl.org/commons/record/ncbi_gene/22433;http://purl.obolibrary.org/obo/TGEMO_00001|NA|NA #> KO_BDNF_48h_4 http://purl.org/commons/record/ncbi_gene/22433;http://purl.obolibrary.org/obo/TGEMO_00001|NA|NA #> WT_BDNF_48h_1 http://www.ebi.ac.uk/efo/EFO_0005168|NA|NA #> WT_basal_5 http://www.ebi.ac.uk/efo/EFO_0004425|http://www.ebi.ac.uk/efo/EFO_0005168|NA #> KO_basal_2 http://www.ebi.ac.uk/efo/EFO_0004425|http://purl.org/commons/record/ncbi_gene/22433;http://purl.obolibrary.org/obo/TGEMO_00001|NA #> WT_BDNF_24h_2 NA|http://www.ebi.ac.uk/efo/EFO_0005168|NA #> KO_basal_4 http://www.ebi.ac.uk/efo/EFO_0004425|http://purl.org/commons/record/ncbi_gene/22433;http://purl.obolibrary.org/obo/TGEMO_00001|NA #> KO_basal_5 http://www.ebi.ac.uk/efo/EFO_0004425|http://purl.org/commons/record/ncbi_gene/22433;http://purl.obolibrary.org/obo/TGEMO_00001|NA #> WT_BDNF_48h_4 http://www.ebi.ac.uk/efo/EFO_0005168|NA|NA #> KO_BDNF_24h_5 NA|http://purl.org/commons/record/ncbi_gene/22433;http://purl.obolibrary.org/obo/TGEMO_00001|NA #> KO_BDNF_48h_2 http://purl.org/commons/record/ncbi_gene/22433;http://purl.obolibrary.org/obo/TGEMO_00001|NA|NA #> KO_BDNF_24h_2 NA|http://purl.org/commons/record/ncbi_gene/22433;http://purl.obolibrary.org/obo/TGEMO_00001|NA #> WT_basal_1 http://www.ebi.ac.uk/efo/EFO_0004425|http://www.ebi.ac.uk/efo/EFO_0005168|NA #> KO_BDNF_24h_4 NA|http://purl.org/commons/record/ncbi_gene/22433;http://purl.obolibrary.org/obo/TGEMO_00001|NA #> WT_basal_3 http://www.ebi.ac.uk/efo/EFO_0004425|http://www.ebi.ac.uk/efo/EFO_0005168|NA #> otherCharacteristics #> WT_basal_4 total RNA|biotin|telencephalon primary culture|'tissue: telencephalon primary culture', 'embryonic day: E12.5' #> KO_BDNF_48h_5 total RNA|biotin|telencephalon primary culture|'tissue: telencephalon primary culture', 'embryonic day: E12.5' #> WT_BDNF_24h_5 total RNA|biotin|telencephalon primary culture|'tissue: telencephalon primary culture', 'embryonic day: E12.5' #> WT_BDNF_48h_2 total RNA|biotin|telencephalon primary culture|'tissue: telencephalon primary culture', 'embryonic day: E12.5' #> WT_BDNF_24h_1 total RNA|biotin|telencephalon primary culture|'tissue: telencephalon primary culture', 'embryonic day: E12.5' #> WT_BDNF_24h_3 total RNA|biotin|telencephalon primary culture|'tissue: telencephalon primary culture', 'embryonic day: E12.5' #> KO_basal_1 total RNA|biotin|telencephalon primary culture|'tissue: telencephalon primary culture', 'embryonic day: E12.5'. #> KO_basal_3 total RNA|biotin|telencephalon primary culture|'tissue: telencephalon primary culture', 'embryonic day: E12.5' #> WT_BDNF_48h_3 total RNA|biotin|telencephalon primary culture|'tissue: telencephalon primary culture', 'embryonic day: E12.5' #> WT_BDNF_24h_4 total RNA|biotin|telencephalon primary culture|'tissue: telencephalon primary culture', 'embryonic day: E12.5' #> WT_BDNF_48h_5 total RNA|biotin|telencephalon primary culture|'tissue: telencephalon primary culture', 'embryonic day: E12.5' #> KO_BDNF_48h_1 total RNA|biotin|telencephalon primary culture|'tissue: telencephalon primary culture', 'embryonic day: E12.5' #> KO_BDNF_24h_1 total RNA|biotin|telencephalon primary culture|'tissue: telencephalon primary culture', 'embryonic day: E12.5' #> KO_BDNF_24h_3 total RNA|biotin|telencephalon primary culture|'tissue: telencephalon primary culture', 'embryonic day: E12.5' #> WT_basal_2 total RNA|biotin|telencephalon primary culture|'tissue: telencephalon primary culture', 'embryonic day: E12.5' #> KO_BDNF_48h_3 total RNA|biotin|telencephalon primary culture|'tissue: telencephalon primary culture', 'embryonic day: E12.5' #> KO_BDNF_48h_4 total RNA|biotin|telencephalon primary culture|'tissue: telencephalon primary culture', 'embryonic day: E12.5' #> WT_BDNF_48h_1 total RNA|biotin|telencephalon primary culture|'tissue: telencephalon primary culture', 'embryonic day: E12.5' #> WT_basal_5 total RNA|biotin|telencephalon primary culture|'tissue: telencephalon primary culture', 'embryonic day: E12.5' #> KO_basal_2 total RNA|biotin|telencephalon primary culture|'tissue: telencephalon primary culture', 'embryonic day: E12.5' #> WT_BDNF_24h_2 total RNA|biotin|telencephalon primary culture|'tissue: telencephalon primary culture', 'embryonic day: E12.5' #> KO_basal_4 total RNA|biotin|telencephalon primary culture|'tissue: telencephalon primary culture', 'embryonic day: E12.5' #> KO_basal_5 total RNA|biotin|telencephalon primary culture|'tissue: telencephalon primary culture', 'embryonic day: E12.5' #> WT_BDNF_48h_4 total RNA|biotin|telencephalon primary culture|'tissue: telencephalon primary culture', 'embryonic day: E12.5' #> KO_BDNF_24h_5 total RNA|biotin|telencephalon primary culture|'tissue: telencephalon primary culture', 'embryonic day: E12.5' #> KO_BDNF_48h_2 total RNA|biotin|telencephalon primary culture|'tissue: telencephalon primary culture', 'embryonic day: E12.5' #> KO_BDNF_24h_2 total RNA|biotin|telencephalon primary culture|'tissue: telencephalon primary culture', 'embryonic day: E12.5' #> WT_basal_1 total RNA|biotin|telencephalon primary culture|'tissue: telencephalon primary culture', 'embryonic day: E12.5' #> KO_BDNF_24h_4 total RNA|biotin|telencephalon primary culture|'tissue: telencephalon primary culture', 'embryonic day: E12.5' #> WT_basal_3 total RNA|biotin|telencephalon primary culture|'tissue: telencephalon primary culture', 'embryonic day: E12.5'